mRNA_H-elongata_contig113341.1076.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig113341.1076.1
Unique NamemRNA_H-elongata_contig113341.1076.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig113341.1076.1 vs. uniprot
Match: D7G3H6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3H6_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 1.790e-67
Identity = 112/150 (74.67%), Postives = 131/150 (87.33%), Query Frame = 1 
Query:    4 VQAISHVLRLREPEERFTLLNYTVSTLPSMYVRGFKKTATNIVDYYRAQGDACHDQELRSMVLELGEALDVIMPEDRVRYLCKEVDEWAAKKAEEDSMELRRLREYEAEDLEMRRKTASGLWNRNMHPDARMDTEEKAEMKKLTDAIRAQ 453
            V+ ISHVLR++EPEER  LLN T+STLPSMY+RGFK+TATNIVDYY A GD C DQ+LRSMVLE+GE L V+M E+R+  L KE+D+WAAKKAEEDS ELRRLREYEAEDLE+RR TASGLWN+ MHPDA MDTEEKAE++KLTDA++ Q
Sbjct:  469 VELISHVLRMKEPEERLALLNITISTLPSMYIRGFKRTATNIVDYYEAMGDNCMDQDLRSMVLEIGENLKVLMSEERMAVLTKEIDDWAAKKAEEDSTELRRLREYEAEDLELRRATASGLWNKQMHPDATMDTEEKAEIRKLTDALKGQ 618
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BLAST of mRNA_H-elongata_contig113341.1076.1 vs. uniprot
Match: A0A6H5KR11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR11_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 5.110e-65
Identity = 112/152 (73.68%), Postives = 131/152 (86.18%), Query Frame = 1 
Query:    4 VQAISHVLRLREPEERFTLLNYTVSTLPSMYVRGFKKTATNIVDYYRAQGDACHDQELRSMVLELGEALDVIMPEDRVRYLCKEVDEWAAKKAEEDSME--LRRLREYEAEDLEMRRKTASGLWNRNMHPDARMDTEEKAEMKKLTDAIRAQ 453
            V+ ISHVLR++EPEER  LLN T+STLPSMY+RGFK+TATNIVDYY A GD C DQ+LRSMVLE+GE L V+M E+R+  L KE+D+WAAKKAEEDS E  LRRLREYEAEDLE+RR TASGLWN+ MHPDA MDTEEKAE++KLTDA++ Q
Sbjct:  732 VELISHVLRMKEPEERLALLNITISTLPSMYIRGFKRTATNIVDYYEAMGDNCMDQDLRSMVLEIGENLKVLMSEERMAVLTKEIDDWAAKKAEEDSTESKLRRLREYEAEDLELRRATASGLWNKQMHPDATMDTEEKAEIRKLTDALKGQ 883
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113341.1076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3H6_ECTSI1.790e-6774.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KR11_9PHAE5.110e-6573.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig113341contigH-elongata_contig113341:122..1785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score228.8
Seed ortholog evalue1.8e-57
Seed eggNOG ortholog2880.D7G3H6
EggNOG OGs2DKX4@1,2S63Q@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_004650.1
Exons3
Model size480
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig113341.1076.1prot_H-elongata_contig113341.1076.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig113341 122..1785 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929653.6215198-CDS-H-elongata_contig113341:121..3071622929653.6215198-CDS-H-elongata_contig113341:121..307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113341 122..307 +
1691679106.9014256-CDS-H-elongata_contig113341:121..3071691679106.9014256-CDS-H-elongata_contig113341:121..307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113341 122..307 +
1622929653.6393473-CDS-H-elongata_contig113341:779..8931622929653.6393473-CDS-H-elongata_contig113341:779..893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113341 780..893 +
1691679106.9128797-CDS-H-elongata_contig113341:779..8931691679106.9128797-CDS-H-elongata_contig113341:779..893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113341 780..893 +
1622929653.653007-CDS-H-elongata_contig113341:1605..17851622929653.653007-CDS-H-elongata_contig113341:1605..1785Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113341 1606..1785 +
1691679106.923328-CDS-H-elongata_contig113341:1605..17851691679106.923328-CDS-H-elongata_contig113341:1605..1785Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113341 1606..1785 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig113341.1076.1

>prot_H-elongata_contig113341.1076.1 ID=prot_H-elongata_contig113341.1076.1|Name=mRNA_H-elongata_contig113341.1076.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp
MVQAISHVLRLREPEERFTLLNYTVSTLPSMYVRGFKKTATNIVDYYRAQ
GDACHDQELRSMVLELGEALDVIMPEDRVRYLCKEVDEWAAKKAEEDSME
LRRLREYEAEDLEMRRKTASGLWNRNMHPDARMDTEEKAEMKKLTDAIRA
QVMNYPLFI*
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mRNA from alignment at H-elongata_contig113341:122..1785+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig113341.1076.1 ID=mRNA_H-elongata_contig113341.1076.1|Name=mRNA_H-elongata_contig113341.1076.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1664bp|location=Sequence derived from alignment at H-elongata_contig113341:122..1785+ (Himanthalia elongata Himel1 dioecious)
ATGGTGCAGGCAATTTCGCACGTGCTGAGGCTCAGAGAGCCGGAGGAACG
CTTCACCCTCCTCAACTACACCGTCAGCACGCTGCCCTCCATGTATGTGC
GCGGCTTCAAGAAGACGGCCACCAACATCGTGGACTACTACCGCGCCCAG
GGAGACGCCTGCCATGACCAAGAGTTGCGCTCGATGGTGAGGGAAAAGAA
GAGGGGAAAGTTCCGAGAAAAATATTTGCGCCCCGCGAGGGAGCTTCGGC
ACCATGAATGTAGACTGATTGCTTCCTATCTGGGGTGAATTGTTTTGTGA
GCGGGGGGGGGTGGGGGGGGATGCAGCCGGGGTTGTTGCTTGCAGCAGAG
GATGAATTATTCGTTGAAGTTATGTAAGTACGAGGAGCTTTCAGTGCATT
AAATATAATTTTCTGGTCAGTCCTTAAATGCAGACCTGACCTGCAAATGT
ATTCGTGTAGACCTACTACCGCCTCCTCCAGAACCACACATTAGAAACCT
TGGAGTGGGTTAGGGTTAGGGTTAGGGTGATGGTCGGGTGTGTGTGTGTG
TGTGTATGTTATATTCCTTCGTCTCATGTGTGTTGTCTATGTGTTAAGTG
CGTATGGTGTTGTTTTCCTTATACTGAAGACAAGTAATCTCGGGCGTTCG
CGAGGCAGGTTCTTGAATTGGGAGAGGCTCTGGACGTTATTATGCCCGAG
GATCGCGTGCGGTACCTCTGCAAGGAGGTGGATGAATGGGCAGCTAAGAA
GGCCGAGGAAGACAGCATGGAGGTGACCGAACCGAATCACGAAAAACCGG
CACCACGCGGCCTTCTCCAGGGCATCTCTACCTTTTGAAGATGTTTGTTT
TTGTTTTGATTGGTTCTTTGTCGAGCGCCACGCAACGTCGCACTCTTTAG
AGGGAGGAGGCGTTGATTTCTCGCTCGGCCGTTGCCGTGCGCCAGCTGCA
GCCAGAAGCTAGAGCTTACCATGTCTTGCCTCTGCATAACTTTATCATAG
CACTATTGATAGTCTACAAGAAACATATGTCTATGCTATCGCCAACCCTG
TTCGGGGAGTAATCTAGGTCATATATATATATATCTGAACGCAGTCAGAC
CCTCTTTACGCTGTGCCCGGTCTCCAGTCCACTCCAGTCCAGGGGATGGT
ACCAACTACCGTCAAGTTCGAGTATATACATGACAACCTATGCACACAAA
ATCGTCACATGCGGCGAATCGGGTTGGAGTTGAGGTCGGGGAGGTTCTAT
ACGATGGCTCCCCTCTTGCTCCCAAGATATGCTTGGGTCCCAAATGTCTC
TCCGGTGTCGATTCGCTCGACATGTAACGTTGGACATGGTACGGGGTCTA
GACCGTTCCTAGAGAGATAAACGGGGTGCATGAAATATATCTTGGGTAGC
CGTTTGAAGCAGGAAAGAGGTGGGGGTGTACTGTAACTCGAAAAGCACAA
AAGCGGATTGTTTCACACGCGCGCGCAGAGCAAGCTGAGGCGGCTGAGGG
AGTACGAAGCGGAGGACTTGGAGATGCGGCGCAAGACGGCTTCCGGCCTG
TGGAACCGAAATATGCACCCTGACGCTAGAATGGATACCGAGGAAAAGGC
CGAGATGAAGAAGCTAACCGATGCCATCCGGGCGCAGGTGATGAATTACC
CTCTTTTTATATAA
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Coding sequence (CDS) from alignment at H-elongata_contig113341:122..1785+

>mRNA_H-elongata_contig113341.1076.1 ID=mRNA_H-elongata_contig113341.1076.1|Name=mRNA_H-elongata_contig113341.1076.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig113341:122..1785+ (Himanthalia elongata Himel1 dioecious)
ATGGTGCAGGCAATTTCGCACGTGCTGAGGCTCAGAGAGCCGGAGGAACG
CTTCACCCTCCTCAACTACACCGTCAGCACGCTGCCCTCCATGTATGTGC
GCGGCTTCAAGAAGACGGCCACCAACATCGTGGACTACTACCGCGCCCAG
GGAGACGCCTGCCATGACCAAGAGTTGCGCTCGATGATGGTGCAGGCAAT
TTCGCACGTGCTGAGGCTCAGAGAGCCGGAGGAACGCTTCACCCTCCTCA
ACTACACCGTCAGCACGCTGCCCTCCATGTATGTGCGCGGCTTCAAGAAG
ACGGCCACCAACATCGTGGACTACTACCGCGCCCAGGGAGACGCCTGCCA
TGACCAAGAGTTGCGCTCGATGGTTCTTGAATTGGGAGAGGCTCTGGACG
TTATTATGCCCGAGGATCGCGTGCGGTACCTCTGCAAGGAGGTGGATGAA
TGGGCAGCTAAGAAGGCCGAGGAAGACAGCATGGAGGTTCTTGAATTGGG
AGAGGCTCTGGACGTTATTATGCCCGAGGATCGCGTGCGGTACCTCTGCA
AGGAGGTGGATGAATGGGCAGCTAAGAAGGCCGAGGAAGACAGCATGGAG
CTGAGGCGGCTGAGGGAGTACGAAGCGGAGGACTTGGAGATGCGGCGCAA
GACGGCTTCCGGCCTGTGGAACCGAAATATGCACCCTGACGCTAGAATGG
ATACCGAGGAAAAGGCCGAGATGAAGAAGCTAACCGATGCCATCCGGGCG
CAGGTGATGAATTACCCTCTTTTTATATAACTGAGGCGGCTGAGGGAGTA
CGAAGCGGAGGACTTGGAGATGCGGCGCAAGACGGCTTCCGGCCTGTGGA
ACCGAAATATGCACCCTGACGCTAGAATGGATACCGAGGAAAAGGCCGAG
ATGAAGAAGCTAACCGATGCCATCCGGGCGCAGGTGATGAATTACCCTCT
TTTTATATAA
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