mRNA_H-elongata_contig113103.1066.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig113103.1066.1 vs. uniprot
Match: D7FQT5_ECTSI (SRP101, alpha subunit of the signal recognition particle receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT5_ECTSI) HSP 1 Score: 192 bits (489), Expect = 3.390e-56 Identity = 92/114 (80.70%), Postives = 106/114 (92.98%), Query Frame = 1
Query: 4 VFGAGYAKDSSSVAREAIKHAEDQGYECVLIDTAGRMQNNEPLMRALSKVINENEPDLVLFVGEALVGNDGVNQLHMFNQVLANNSPMGRLHQIDGIILTKFDTIDTKVCSSIS 345
+F GYA+DSS+VAREA+KHA ++GY+CVLIDTAGRMQNNEPLMRALSK+INENEP+LVLFVGEALVGNDGVNQL MFNQ LANNSP GR HQIDG++LTKFDTIDTKV +++S
Sbjct: 441 LFEKGYARDSSAVAREAVKHAAEEGYDCVLIDTAGRMQNNEPLMRALSKLINENEPELVLFVGEALVGNDGVNQLQMFNQALANNSPAGRYHQIDGVVLTKFDTIDTKVGAALS 554
BLAST of mRNA_H-elongata_contig113103.1066.1 vs. uniprot
Match: K8Z840_NANGC (Signal recognition particle receptor subunit alpha n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z840_NANGC) HSP 1 Score: 158 bits (399), Expect = 1.060e-44 Identity = 74/115 (64.35%), Postives = 99/115 (86.09%), Query Frame = 1
Query: 1 NVFGAGYAKDSSSVAREAIKHAEDQGYECVLIDTAGRMQNNEPLMRALSKVINENEPDLVLFVGEALVGNDGVNQLHMFNQVLANNSPMGRLHQIDGIILTKFDTIDTKVCSSIS 345
+++ GY KD ++VA+ AIK A D+G++ VL+DTAGRMQN EPLMRAL+K++++N+PDLV+FVGEALVGNDG++QL +FNQ LAN SP G+ HQIDGIILTKFDT+D KV +++S
Sbjct: 226 DLYDKGYHKDPAAVAKAAIKEATDKGHDVVLVDTAGRMQNKEPLMRALAKLVSDNQPDLVVFVGEALVGNDGIDQLTVFNQALANYSPPGKTHQIDGIILTKFDTVDEKVGAALS 340
BLAST of mRNA_H-elongata_contig113103.1066.1 vs. uniprot
Match: A0A3M6VSC8_9STRA (SRP54 domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VSC8_9STRA) HSP 1 Score: 160 bits (405), Expect = 5.760e-44 Identity = 77/114 (67.54%), Postives = 97/114 (85.09%), Query Frame = 1
Query: 4 VFGAGYAKDSSSVAREAIKHAEDQGYECVLIDTAGRMQNNEPLMRALSKVINENEPDLVLFVGEALVGNDGVNQLHMFNQVLANNSPMGRLHQIDGIILTKFDTIDTKVCSSIS 345
+F GYAKD +SVA+EAIK+ D GY+CVLIDTAGRMQNNEPLMRAL+K+++ NEPDLVLFVGEALVGNDG++QL MF++ LA+ S H+IDGI++TKFDTID KV +++S
Sbjct: 452 LFQKGYAKDPASVAKEAIKYGADHGYDCVLIDTAGRMQNNEPLMRALAKLVSNNEPDLVLFVGEALVGNDGIDQLSMFDRALADYSDRREPHRIDGIVITKFDTIDDKVGAAVS 565
BLAST of mRNA_H-elongata_contig113103.1066.1 vs. uniprot
Match: A0A7S1U981_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U981_9STRA) HSP 1 Score: 156 bits (395), Expect = 1.010e-43 Identity = 75/117 (64.10%), Postives = 96/117 (82.05%), Query Frame = 1
Query: 4 VFGAGYAKDSSSVAREAIKHAEDQGYECVLIDTAGRMQNNEPLMRALSKVINENEPDLVLFVGEALVGNDGVNQLHMFNQVLANNSPMGRLHQIDGIILTKFDTIDTKVCSSISPQH 354
+F GYA+D SSVA A HA + GY+ +L+DTAGRMQNNEPLM+ALSK+I++N PDL LFVGEALVGNDG++QL MFN+ LA+NSP G H++DGI+LTKFDTID KV +++S +
Sbjct: 270 LFERGYARDPSSVAAAAKVHARENGYDVLLVDTAGRMQNNEPLMKALSKLISDNRPDLTLFVGEALVGNDGIDQLMMFNESLADNSPPGTHHEVDGIMLTKFDTIDDKVGAALSMSY 386
BLAST of mRNA_H-elongata_contig113103.1066.1 vs. uniprot
Match: A0A0P1B7H3_PLAHL (Signal recognition particle receptor subunit alpha n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B7H3_PLAHL) HSP 1 Score: 159 bits (401), Expect = 2.200e-43 Identity = 75/114 (65.79%), Postives = 98/114 (85.96%), Query Frame = 1
Query: 4 VFGAGYAKDSSSVAREAIKHAEDQGYECVLIDTAGRMQNNEPLMRALSKVINENEPDLVLFVGEALVGNDGVNQLHMFNQVLANNSPMGRLHQIDGIILTKFDTIDTKVCSSIS 345
+F GYAKD +SVA+EA+K+ + GY+CVLIDTAGRMQNNEPLMRAL+K++++NEPDLVLFVGEALVGNDG++QL MF++ LA+ S H+IDGI++TKFDTID KV +++S
Sbjct: 454 LFQRGYAKDPASVAKEAVKYGTENGYDCVLIDTAGRMQNNEPLMRALAKLVSKNEPDLVLFVGEALVGNDGIDQLSMFDRALADYSDRREPHRIDGIVITKFDTIDDKVGAAVS 567
BLAST of mRNA_H-elongata_contig113103.1066.1 vs. uniprot
Match: H3G7F3_PHYRM (SRP54 domain-containing protein n=23 Tax=Phytophthora TaxID=4783 RepID=H3G7F3_PHYRM) HSP 1 Score: 158 bits (399), Expect = 4.250e-43 Identity = 75/114 (65.79%), Postives = 97/114 (85.09%), Query Frame = 1
Query: 4 VFGAGYAKDSSSVAREAIKHAEDQGYECVLIDTAGRMQNNEPLMRALSKVINENEPDLVLFVGEALVGNDGVNQLHMFNQVLANNSPMGRLHQIDGIILTKFDTIDTKVCSSIS 345
+F GYAKD +SVA+EA+K+ + GY+CVLIDTAGRMQNNEPLMRAL+K+++ NEPDLVLFVGEALVGNDG++QL MF++ LA+ S H+IDGI++TKFDTID KV +++S
Sbjct: 454 LFQKGYAKDPASVAKEAVKYGTENGYDCVLIDTAGRMQNNEPLMRALAKLVSNNEPDLVLFVGEALVGNDGIDQLAMFDRALADYSDRREPHRIDGIVITKFDTIDDKVGAAVS 567
BLAST of mRNA_H-elongata_contig113103.1066.1 vs. uniprot
Match: A0A4D9D5H8_9STRA (SRP54 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5H8_9STRA) HSP 1 Score: 158 bits (399), Expect = 7.060e-43 Identity = 74/115 (64.35%), Postives = 99/115 (86.09%), Query Frame = 1
Query: 1 NVFGAGYAKDSSSVAREAIKHAEDQGYECVLIDTAGRMQNNEPLMRALSKVINENEPDLVLFVGEALVGNDGVNQLHMFNQVLANNSPMGRLHQIDGIILTKFDTIDTKVCSSIS 345
+++ GY KD ++VA+ AIK A D+G++ VL+DTAGRMQN EPLMRAL+K++++N+PDLV+FVGEALVGNDG++QL +FNQ LAN SP G+ HQIDGIILTKFDT+D KV +++S
Sbjct: 506 DLYDKGYHKDPAAVAKAAIKEATDKGHDVVLVDTAGRMQNKEPLMRALAKLVSDNQPDLVVFVGEALVGNDGIDQLTVFNQALANYSPPGKTHQIDGIILTKFDTVDEKVGAALS 620
BLAST of mRNA_H-elongata_contig113103.1066.1 vs. uniprot
Match: K3WPU5_GLOUD (SRP54 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WPU5_GLOUD) HSP 1 Score: 155 bits (392), Expect = 4.460e-42 Identity = 74/114 (64.91%), Postives = 97/114 (85.09%), Query Frame = 1
Query: 4 VFGAGYAKDSSSVAREAIKHAEDQGYECVLIDTAGRMQNNEPLMRALSKVINENEPDLVLFVGEALVGNDGVNQLHMFNQVLANNSPMGRLHQIDGIILTKFDTIDTKVCSSIS 345
+F GYAKD ++VA+EA+K+ D G++CVLIDTAGRMQNNEPLMRAL+K+++ NEPDLVLFVGEALVGNDG++QL MF++ LA+ S H+IDGI++TKFDTID KV +++S
Sbjct: 459 LFQKGYAKDPAAVAKEAVKYGTDNGFDCVLIDTAGRMQNNEPLMRALAKLVSINEPDLVLFVGEALVGNDGIDQLSMFDRALADYSDRRDPHRIDGIVITKFDTIDDKVGAAVS 572
BLAST of mRNA_H-elongata_contig113103.1066.1 vs. uniprot
Match: A0A662XUH7_9STRA (SRP54 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XUH7_9STRA) HSP 1 Score: 155 bits (391), Expect = 5.950e-42 Identity = 74/108 (68.52%), Postives = 92/108 (85.19%), Query Frame = 1
Query: 4 VFGAGYAKDSSSVAREAIKHAEDQGYECVLIDTAGRMQNNEPLMRALSKVINENEPDLVLFVGEALVGNDGVNQLHMFNQVLANNSPMGRLHQIDGIILTKFDTIDTK 327
+F GYAKD +SVA++AIK+ D GY+CVLIDTAGRMQNNEPLMRAL+K+++ NEPDLVLFVGEALVGNDG++QL MF++ LA+ S H+IDGI++TKFDTID K
Sbjct: 449 LFEKGYAKDPASVAKDAIKYGTDNGYDCVLIDTAGRMQNNEPLMRALAKLVSNNEPDLVLFVGEALVGNDGIDQLAMFDRALADYSDRREPHRIDGIVITKFDTIDDK 556
BLAST of mRNA_H-elongata_contig113103.1066.1 vs. uniprot
Match: A0A024GCJ8_9STRA (SRP54 domain-containing protein n=9 Tax=Albugo TaxID=65356 RepID=A0A024GCJ8_9STRA) HSP 1 Score: 154 bits (390), Expect = 7.450e-42 Identity = 73/114 (64.04%), Postives = 96/114 (84.21%), Query Frame = 1
Query: 4 VFGAGYAKDSSSVAREAIKHAEDQGYECVLIDTAGRMQNNEPLMRALSKVINENEPDLVLFVGEALVGNDGVNQLHMFNQVLANNSPMGRLHQIDGIILTKFDTIDTKVCSSIS 345
+F GYAK+ ++VA+EAI+HA G++CVLIDTAGRMQNNEPLMRAL+K+++ N PDL+LFVGEALVGNDG+NQL MF++ LA++S H IDGI++TKFDTID KV +++S
Sbjct: 445 LFERGYAKNPAAVAQEAIQHATANGFDCVLIDTAGRMQNNEPLMRALAKLVSSNNPDLILFVGEALVGNDGINQLSMFDRALADSSDHQNAHGIDGIVITKFDTIDDKVGAAVS 558 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113103.1066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig113103.1066.1 >prot_H-elongata_contig113103.1066.1 ID=prot_H-elongata_contig113103.1066.1|Name=mRNA_H-elongata_contig113103.1066.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp NVFGAGYAKDSSSVAREAIKHAEDQGYECVLIDTAGRMQNNEPLMRALSKback to top mRNA from alignment at H-elongata_contig113103:308..1637+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig113103.1066.1 ID=mRNA_H-elongata_contig113103.1066.1|Name=mRNA_H-elongata_contig113103.1066.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1330bp|location=Sequence derived from alignment at H-elongata_contig113103:308..1637+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig113103:308..1637+ >mRNA_H-elongata_contig113103.1066.1 ID=mRNA_H-elongata_contig113103.1066.1|Name=mRNA_H-elongata_contig113103.1066.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig113103:308..1637+ (Himanthalia elongata Himel1 dioecious)back to top |