mRNA_H-elongata_contig113100.1065.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig113100.1065.1
Unique NamemRNA_H-elongata_contig113100.1065.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: A0A6H5KVT7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT7_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.800e-23
Identity = 52/103 (50.49%), Postives = 68/103 (66.02%), Query Frame = 1
Query:    1 VDLADAKPVQSPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDFLQGIS----PAKVDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 297
            VDL   K V S GGK Y MI KDDF+R AR+Y LR KS+A   F  FL  +     P+ +++VRSD G +F  G F+++C ++ IKQE +PA S EFNGVA+R
Sbjct:  284 VDLGGKKGVASIGGKHYPMILKDDFTRRARMYFLRSKSDAGSVFRSFLANVRADGIPSLIEIVRSDNGGKFFGGEFASVCNELLIKQEFTPAHSPEFNGVAER 386          
BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: A0A6H5KKD1_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD1_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 6.870e-18
Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = 1
Query:   55 MIAKDDFSRFARVYSLRRKSEASRYFPDFLQGIS----PAKVDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 297
            MI KDDF+R   +Y LR KS+A   F  FL  +     P+ V++VRSD G EF  G F+++C ++ IKQE +PA SL++NGVA+R
Sbjct:    1 MIVKDDFTRRTWMYFLRNKSDAGSAFRTFLASVRANGVPSFVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSLQYNGVAER 85          
BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: A0A438C6Y4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438C6Y4_VITVI)

HSP 1 Score: 75.1 bits (183), Expect = 1.150e-13
Identity = 41/102 (40.20%), Postives = 57/102 (55.88%), Query Frame = 1
Query:    1 VDLADAKPVQSPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDF---LQGISPAKVDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 297
            +DL      +S GGK+Y+++  DD+SR+A V  LR KSEA   F D    +Q      ++ +RSDRGREF N  F   C  + IK E S   + + NGV +R
Sbjct:  578 MDLMGPMRTESLGGKKYILVMVDDYSRYAWVAFLRDKSEAFINFKDIGLKIQNEKGHPIERIRSDRGREFDNSNFFEFCHSLGIKHEFSAPRTPQQNGVVER 679          
BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: A5ATE2_VITVI (Integrase catalytic domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5ATE2_VITVI)

HSP 1 Score: 75.1 bits (183), Expect = 1.150e-13
Identity = 41/102 (40.20%), Postives = 57/102 (55.88%), Query Frame = 1
Query:    1 VDLADAKPVQSPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDF---LQGISPAKVDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 297
            +DL      +S GGK+Y+++  DD+SR+A V  LR KSEA   F D    +Q      ++ +RSDRGREF N  F   C  + IK E S   + + NGV +R
Sbjct:  175 MDLMGPMRTESLGGKKYILVMVDDYSRYAWVAFLRDKSEAFINFKDIGLKIQNEKGHPIERIRSDRGREFDNSNFFEFCHSLGIKHEFSXPRTPQQNGVVER 276          
BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: A0A438EDK4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EDK4_VITVI)

HSP 1 Score: 75.1 bits (183), Expect = 1.160e-13
Identity = 41/102 (40.20%), Postives = 57/102 (55.88%), Query Frame = 1
Query:    1 VDLADAKPVQSPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDF---LQGISPAKVDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 297
            +DL      +S GGK+Y+++  DD+SR+A V  LR KSEA   F D    +Q      ++ +RSDRGREF N  F   C  + IK E S   + + NGV +R
Sbjct:  256 MDLMGPMRTESLGGKKYILVMVDDYSRYAWVAFLRDKSEAFINFKDIGLKIQNEKGHPIERIRSDRGREFDNSNFFEFCHSLGIKHEFSAPRTPQQNGVVER 357          
BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: A0A7N2LKM9_QUELO (Integrase catalytic domain-containing protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2LKM9_QUELO)

HSP 1 Score: 73.6 bits (179), Expect = 4.030e-13
Identity = 41/102 (40.20%), Postives = 55/102 (53.92%), Query Frame = 1
Query:    1 VDLADAKPVQSPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDFLQGISPAK---VDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 297
            VDL      +S GGKRY+M+  DD+SR+  V  LR KSEA        + +   K   +  VRSD GREF N  F + C +  IK+E S   + + NGV +R
Sbjct:  234 VDLMGPTRTESLGGKRYIMVVVDDYSRYTGVDFLREKSEACERLEILCKKLQNEKGIPIAKVRSDHGREFENARFESFCEKNGIKREFSAPKTPQQNGVVER 335          
BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: UPI001243F70B (receptor-like protein EIX2 n=1 Tax=Quercus lobata TaxID=97700 RepID=UPI001243F70B)

HSP 1 Score: 73.2 bits (178), Expect = 5.510e-13
Identity = 39/102 (38.24%), Postives = 55/102 (53.92%), Query Frame = 1
Query:    1 VDLADAKPVQSPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDF---LQGISPAKVDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 297
            +DL      +S GGKRY+M+  DDF+R+  V  LR KS A ++       LQ     K+D +RSD G+EF N    + C +  I QE S   + + NGV +R
Sbjct:  992 LDLIGPTRTESLGGKRYIMVVVDDFTRYTWVILLRSKSNAPKHIETLCTRLQNEKSLKIDRIRSDHGKEFENSYMESFCTRSGISQEFSTPITPQQNGVLER 1093          
BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: UPI00137765F5 (DDE-type integrase/transposase/recombinase n=1 Tax=Weizmannia coagulans TaxID=1398 RepID=UPI00137765F5)

HSP 1 Score: 72.4 bits (176), Expect = 1.020e-12
Identity = 39/102 (38.24%), Postives = 55/102 (53.92%), Query Frame = 1
Query:    1 VDLADAKPVQSPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDF---LQGISPAKVDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 297
            +DL      +S GGKRY+M+  DDF+R+  V  LR KS+A  +       LQ     K+D +RSD G+EF N    + C +  I QE S   + + NGV +R
Sbjct:  206 LDLMGPTRTESLGGKRYIMVVVDDFTRYTWVILLRSKSDAPEHIEALCTRLQNEKNLKIDRIRSDHGKEFENSYMESFCLKSGISQEFSAPITPQQNGVVER 307          
BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: A0A2Z6NJ75_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NJ75_TRISU)

HSP 1 Score: 72.0 bits (175), Expect = 1.410e-12
Identity = 38/92 (41.30%), Postives = 57/92 (61.96%), Query Frame = 1
Query:   31 SPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDFLQGI---SPAKVDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 297
            S GGKRY +   DDFSR   VY L+ KSEA   F +F   +   S   + ++R+DRG EF++ AF+  C+   IK++L+ A + + NGV++R
Sbjct:  497 SNGGKRYFLTLTDDFSRKTWVYILKEKSEAFETFRNFKAMVELKSGCVIQMLRTDRGGEFTSNAFNEFCKSKGIKRQLTTAYTPQQNGVSER 588          
BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Match: UPI00064DEEDC (uncharacterized protein LOC105967762 n=3 Tax=Erythranthe guttata TaxID=4155 RepID=UPI00064DEEDC)

HSP 1 Score: 71.2 bits (173), Expect = 2.600e-12
Identity = 39/102 (38.24%), Postives = 55/102 (53.92%), Query Frame = 1
Query:    1 VDLADAKPVQSPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDFLQGISPAK---VDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR 297
            +DL     V+S GGKRY+ +  DDFSRF  V  +R KS++   F    + +S  K   +  +RSD GREF N  F+  C +  I  E S   + + NGV +R
Sbjct:  832 MDLMGPMQVESIGGKRYIFVCVDDFSRFTWVEFIREKSDSFDVFKKLCKKVSFEKQQNIVRIRSDHGREFENSLFTNFCEKYGISHEFSAPKTPQQNGVVER 933          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113100.1065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVT7_9PHAE1.800e-2350.49Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KKD1_9PHAE6.870e-1848.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A438C6Y4_VITVI1.150e-1340.20Retrovirus-related Pol polyprotein from transposon... [more]
A5ATE2_VITVI1.150e-1340.20Integrase catalytic domain-containing protein n=1 ... [more]
A0A438EDK4_VITVI1.160e-1340.20Retrovirus-related Pol polyprotein from transposon... [more]
A0A7N2LKM9_QUELO4.030e-1340.20Integrase catalytic domain-containing protein n=1 ... [more]
UPI001243F70B5.510e-1338.24receptor-like protein EIX2 n=1 Tax=Quercus lobata ... [more]
UPI00137765F51.020e-1238.24DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A2Z6NJ75_TRISU1.410e-1241.30Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
UPI00064DEEDC2.600e-1238.24uncharacterized protein LOC105967762 n=3 Tax=Eryth... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig113100contigH-elongata_contig113100:1790..2086 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog164328.Phyra87135
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs3QH4V@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929652.1007752-CDS-H-elongata_contig113100:1789..20861622929652.1007752-CDS-H-elongata_contig113100:1789..2086Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113100 1790..2086 -
1691679106.2824504-CDS-H-elongata_contig113100:1789..20861691679106.2824504-CDS-H-elongata_contig113100:1789..2086Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113100 1790..2086 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig113100.1065.1prot_H-elongata_contig113100.1065.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig113100 1790..2086 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig113100.1065.1

>prot_H-elongata_contig113100.1065.1 ID=prot_H-elongata_contig113100.1065.1|Name=mRNA_H-elongata_contig113100.1065.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
VDLADAKPVQSPGGKRYMMIAKDDFSRFARVYSLRRKSEASRYFPDFLQG
ISPAKVDVVRSDRGREFSNGAFSALCRQMRIKQELSPAGSLEFNGVAQR
back to top

mRNA from alignment at H-elongata_contig113100:1790..2086-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig113100.1065.1 ID=mRNA_H-elongata_contig113100.1065.1|Name=mRNA_H-elongata_contig113100.1065.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=297bp|location=Sequence derived from alignment at H-elongata_contig113100:1790..2086- (Himanthalia elongata Himel1 dioecious)
GTAGACTTAGCCGACGCAAAGCCAGTACAGTCGCCTGGGGGAAAGCGCTA CATGATGATAGCCAAGGATGACTTCTCTAGATTTGCGCGCGTGTACTCTC TCCGACGCAAGAGCGAGGCCAGCCGATATTTTCCAGACTTTCTGCAAGGC ATTTCCCCCGCAAAGGTTGACGTTGTTCGGTCTGACAGGGGGAGAGAGTT TTCTAACGGGGCTTTCAGTGCACTCTGTAGACAGATGCGAATCAAACAAG AGCTGTCTCCGGCTGGTAGTCTGGAGTTTAATGGAGTCGCTCAGCGT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig113100:1790..2086-

>mRNA_H-elongata_contig113100.1065.1 ID=mRNA_H-elongata_contig113100.1065.1|Name=mRNA_H-elongata_contig113100.1065.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig113100:1790..2086- (Himanthalia elongata Himel1 dioecious)
GTAGACTTAGCCGACGCAAAGCCAGTACAGTCGCCTGGGGGAAAGCGCTA
CATGATGATAGCCAAGGATGACTTCTCTAGATTTGCGCGCGTGTACTCTC
TCCGACGCAAGAGCGAGGCCAGCCGATATTTTCCAGACTTTCTGCAAGGC
ATTTCCCCCGCAAAGGTTGACGTTGTTCGGTCTGACAGGGGGAGAGAGTT
TTCTAACGGGGCTTTCAGTGCACTCTGTAGACAGATGCGAATCAAACAAG
AGCTGTCTCCGGCTGGTAGTCTGGAGTTTAATGGAGTCGCTCAGCGTGTA
GACTTAGCCGACGCAAAGCCAGTACAGTCGCCTGGGGGAAAGCGCTACAT
GATGATAGCCAAGGATGACTTCTCTAGATTTGCGCGCGTGTACTCTCTCC
GACGCAAGAGCGAGGCCAGCCGATATTTTCCAGACTTTCTGCAAGGCATT
TCCCCCGCAAAGGTTGACGTTGTTCGGTCTGACAGGGGGAGAGAGTTTTC
TAACGGGGCTTTCAGTGCACTCTGTAGACAGATGCGAATCAAACAAGAGC
TGTCTCCGGCTGGTAGTCTGGAGTTTAATGGAGTCGCTCAGCGT
back to top