mRNA_H-elongata_contig11309.1061.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11309.1061.1 vs. uniprot
Match: A0A6H5L146_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L146_9PHAE) HSP 1 Score: 147 bits (372), Expect = 1.030e-41 Identity = 78/126 (61.90%), Postives = 89/126 (70.63%), Query Frame = 1
Query: 1 DKPYEYVTVSSSSLARVSPDGSPFAEYLSPGKGGTTDVVTFRNMRRDARLVSPCRAGDY---GYAHLAAFVRSAPKQQARMGGGGIFPTAVVNFFRAVGAALEEEVASRGDDRPVWLSTSGLGVYW 369
DKPYEYV V S LA V+ DGSPFAE+++ K GT DVV+FRN+RRDARLV PCR G YAHLAAFVR+AP+ Q VV FF AVG LE+E+ASR D+ PVWLSTSGLGVYW
Sbjct: 149 DKPYEYVLVDSPRLAAVTADGSPFAEHIA-SKQGTDDVVSFRNLRRDARLVVPCRGGQQPGANYAHLAAFVRTAPRDQ------------VVKFFGAVGEGLEDEIASRADETPVWLSTSGLGVYW 261
BLAST of mRNA_H-elongata_contig11309.1061.1 vs. uniprot
Match: D8LJS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS5_ECTSI) HSP 1 Score: 144 bits (364), Expect = 2.220e-40 Identity = 76/126 (60.32%), Postives = 88/126 (69.84%), Query Frame = 1
Query: 1 DKPYEYVTVSSSSLARVSPDGSPFAEYLSPGKGGTTDVVTFRNMRRDARLVSPCRAGDY---GYAHLAAFVRSAPKQQARMGGGGIFPTAVVNFFRAVGAALEEEVASRGDDRPVWLSTSGLGVYW 369
DKPYEYV V S LA V+ DG PFAE+++ KG T DVV+FRN+RRDARLV PCR G YAHLAAF+R+AP+ Q VV FF AVG LE+E+ASR D+ PVWLSTSGLGVYW
Sbjct: 152 DKPYEYVLVDSPRLAAVTADGRPFAEHIASRKG-TNDVVSFRNLRRDARLVVPCRGGQQPGANYAHLAAFLRTAPRDQ------------VVQFFGAVGEGLEDEIASRADETPVWLSTSGLGVYW 264
BLAST of mRNA_H-elongata_contig11309.1061.1 vs. uniprot
Match: UPI001880BA32 (hypothetical protein n=1 Tax=unclassified Coleofasciculus TaxID=2692782 RepID=UPI001880BA32) HSP 1 Score: 85.9 bits (211), Expect = 2.190e-18 Identity = 49/121 (40.50%), Postives = 70/121 (57.85%), Query Frame = 1
Query: 10 YEYVTVSSSSLARVSPDGSPFAEYLSPGKGGTTDVVTFRNMRRDARLVSPC-RAGDYGYAHLAAFVRSAPKQQARMGGGGIFPTAVVNFFRAVGAALEEEVASRGDDRPVWLSTSGLGVYW 369
+E+V V S +LA V + S FA + + G ++TF N+ +DA LV PC +A Y H+AAF+R AP QQ +++VG ALE+++ D+ P+WLSTSGLGVYW
Sbjct: 73 FEFVLVDSPNLAGVQANPSDFASHFAAA-GEKESIITFPNLGKDALLVVPCPKASTSTYRHIAAFMREAPTQQKHA------------LWQSVGLALEQKL----DEHPIWLSTSGLGVYW 176
BLAST of mRNA_H-elongata_contig11309.1061.1 vs. uniprot
Match: A0A6B3M9Q3_9CYAN (Uncharacterized protein n=1 Tax=Symploca sp. SIO2E9 TaxID=2607812 RepID=A0A6B3M9Q3_9CYAN) HSP 1 Score: 86.3 bits (212), Expect = 2.300e-18 Identity = 49/125 (39.20%), Postives = 74/125 (59.20%), Query Frame = 1
Query: 1 DKPYEYVTVSSSSLARVSPDGSPFAEYLSPGKGGTTDVV-TFRNMRRDARLVSPCRAG-DYGYAHLAAFVRSAPKQQARMGGGGIFPTAVVNFFRAVGAALEEEVASRGDDRPVWLSTSGLGVYW 369
++ +E+VT++S LA V P+ FA+++ G D+V F N+ DA L++PC+ G Y HLA FVR APK+Q + F+R +G LE+ + +R + P+W+STSGLGVYW
Sbjct: 89 EQTFEFVTLNSPQLANVLPEPDAFAQHI--GDSMNRDLVKVFPNLGGDALLIAPCQNGPQQHYTHLAKFVRCAPKKQ------------IDKFWRTIGYTLEQTLQAR-EPHPLWVSTSGLGVYW 198
BLAST of mRNA_H-elongata_contig11309.1061.1 vs. uniprot
Match: A0A1Z4VMG1_9GAMM (Uncharacterized protein n=4 Tax=Thiohalobacter TaxID=1273155 RepID=A0A1Z4VMG1_9GAMM) HSP 1 Score: 85.9 bits (211), Expect = 2.930e-18 Identity = 54/124 (43.55%), Postives = 67/124 (54.03%), Query Frame = 1
Query: 1 DKPYEYVTVSSSSLARVSPDGSPFAEYLSPGKGGTTDVVTFRNMRRDARLVSPC-RAGDYGYAHLAAFVRSAPKQQARMGGGGIFPTAVVNFFRAVGAALEEEVASRGDDRPVWLSTSGLGVYW 369
D+PYE V V + SLA + PD FA+ GG + F N DARL++PC +A YAHL FVR+AP Q F+R VGAAL ++S P+WLSTSGLGVYW
Sbjct: 79 DRPYEQVCVDAPSLAGIRPDPHSFADQFDRHCGGG-GIAEFANPGGDARLIAPCPQASTDCYAHLLTFVRTAPAAQCDA------------FWRRVGAALGRALSST----PLWLSTSGLGVYW 185
BLAST of mRNA_H-elongata_contig11309.1061.1 vs. uniprot
Match: A0A553PSV5_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553PSV5_TIGCA) HSP 1 Score: 87.0 bits (214), Expect = 1.860e-17 Identity = 57/126 (45.24%), Postives = 73/126 (57.94%), Query Frame = 1
Query: 4 KPYEYVTVSSSSLARVSP-DGSPFAEYLSPGKGGTTDVVTFRNMRRDARLVSPCRAG--DYG-YAHLAAFVRSAPKQQARMGGGGIFPTAVVNFFRAVGAALEEEVASRGDDRPVWLSTSGLGVYW 369
+P+E+V V+S +LARV D F E+ + + DVV F N+RRDA+LV+PC D G YAHLA FVR + Q R F+R V A+ V +GD +PVWLSTSGLGVYW
Sbjct: 579 RPFEFVIVNSPTLARVKKSDVHSFQEHFNVC---SKDVVQFYNLRRDAKLVTPCPKNMPDNGSYAHLAKFVRLGDEIQIR------------EFWRTVAQAMRSRVKDQGD-QPVWLSTSGLGVYW 688
BLAST of mRNA_H-elongata_contig11309.1061.1 vs. uniprot
Match: A0A2D6ITT3_9GAMM (Uncharacterized protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A2D6ITT3_9GAMM) HSP 1 Score: 82.4 bits (202), Expect = 4.860e-17 Identity = 52/124 (41.94%), Postives = 62/124 (50.00%), Query Frame = 1
Query: 1 DKPYEYVTVSSSSLARVSPDGSPFAEYLSPGKGGTTDVVTFRNMRRDARLVSPCRA-GDYGYAHLAAFVRSAPKQQARMGGGGIFPTAVVNFFRAVGAALEEEVASRGDDRPVWLSTSGLGVYW 369
D P+E V V S L+ V+ D PF L + F N+ DA L++PC G YAHLA FVR AP Q R F+ VG AL +AS+ PVWLSTSGLGVYW
Sbjct: 67 DTPFECVVVDSPVLSGVTADSGPFGSQLD-ALHSPDGIALFENLGGDALLIAPCTGQGAVAYAHLALFVRHAPLQLQR------------TFWARVGTALAASLASK----PVWLSTSGLGVYW 173
BLAST of mRNA_H-elongata_contig11309.1061.1 vs. uniprot
Match: A0A6I5N7J3_9CYAN (Uncharacterized protein n=1 Tax=Leptolyngbya sp. SIO4C1 TaxID=2607770 RepID=A0A6I5N7J3_9CYAN) HSP 1 Score: 82.0 bits (201), Expect = 6.300e-17 Identity = 50/124 (40.32%), Postives = 69/124 (55.65%), Query Frame = 1
Query: 4 KPYEYVTVSSSSLARVSPDGSPFAEYLSPGKGGTTDVVTFRNMRRDARLVSPCRAGD-YGYAHLAAFVRS-APKQQARMGGGGIFPTAVVNFFRAVGAALEEEVASRGDDRPVWLSTSGLGVYW 369
+P+E V S LA+++PD S F+E+ G + TF ++ +DA LV+PC G GYAHL AF+RS A QQA A+ A+ + V S+ + RP+WLSTSGLGV W
Sbjct: 69 QPFECVLTESEQLAKIAPDPSDFSEHFRAAAGA---IATFESLGKDALLVTPCPQGSGKGYAHLGAFMRSDAAAQQA-----------------ALWQAVSQAVQSQLNQRPLWLSTSGLGVSW 172
BLAST of mRNA_H-elongata_contig11309.1061.1 vs. uniprot
Match: B0C9H1_ACAM1 (Uncharacterized protein n=1 Tax=Acaryochloris marina (strain MBIC 11017) TaxID=329726 RepID=B0C9H1_ACAM1) HSP 1 Score: 82.4 bits (202), Expect = 6.670e-17 Identity = 47/125 (37.60%), Postives = 72/125 (57.60%), Query Frame = 1
Query: 4 KPYEYVTVSSSSLARVSPDGSPFAEYLSPGKGGTTDVVTFRNMRRDARLVSPCRAGDYG-YAHLAAFVRSAPKQQARMGGGGIFPTAVVNFFRAVGAALEEEVASRGDDR--PVWLSTSGLGVYW 369
+P+E+V V++ SLA+VSP+ PFA+YL + G + F N+ DA L++P G Y HLA FVR P +Q V + ++ +G+ L++ + + R P+W+STSGLGVYW
Sbjct: 85 QPWEFVVVNAPSLAKVSPNPQPFAQYL---ERGDDPIQVFANLGGDAMLIAPRVLGPLPTYTHLANFVRQGPPEQ------------VDDMWQVLGSTLQQLIGDELNSRTAPLWVSTSGLGVYW 194
BLAST of mRNA_H-elongata_contig11309.1061.1 vs. uniprot
Match: A0A2E9JVB4_9GAMM (Uncharacterized protein n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A2E9JVB4_9GAMM) HSP 1 Score: 82.0 bits (201), Expect = 8.030e-17 Identity = 52/122 (42.62%), Postives = 63/122 (51.64%), Query Frame = 1
Query: 7 PYEYVTVSSSSLARVSPDGSPFAEYLSPGKGGTTDVVTFRNMRRDARLVSPCRAGDYG-YAHLAAFVRSAPKQQARMGGGGIFPTAVVNFFRAVGAALEEEVASRGDDRPVWLSTSGLGVYW 369
P+E V V+S +L+ V+ D PF L + TF N+ DA L++PC G YAHLA FVR AP Q R F+ VGAAL +A PVWLSTSGLGVYW
Sbjct: 77 PFECVVVNSPALSGVAADSGPFGSQLDR-LHSPDGIATFENLGGDALLIAPCTGQGAGAYAHLAIFVRHAPLQLQR------------TFWARVGAALAASLAGN----PVWLSTSGLGVYW 181 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11309.1061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11309.1061.1 >prot_H-elongata_contig11309.1061.1 ID=prot_H-elongata_contig11309.1061.1|Name=mRNA_H-elongata_contig11309.1061.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp DKPYEYVTVSSSSLARVSPDGSPFAEYLSPGKGGTTDVVTFRNMRRDARLback to top mRNA from alignment at H-elongata_contig11309:577..1876+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11309.1061.1 ID=mRNA_H-elongata_contig11309.1061.1|Name=mRNA_H-elongata_contig11309.1061.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1300bp|location=Sequence derived from alignment at H-elongata_contig11309:577..1876+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11309:577..1876+ >mRNA_H-elongata_contig11309.1061.1 ID=mRNA_H-elongata_contig11309.1061.1|Name=mRNA_H-elongata_contig11309.1061.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig11309:577..1876+ (Himanthalia elongata Himel1 dioecious)back to top |