mRNA_H-elongata_contig113030.1058.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig113030.1058.1
Unique NamemRNA_H-elongata_contig113030.1058.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig113030.1058.1 vs. uniprot
Match: A0A6H5KJU4_9PHAE (MULE domain-containing protein n=6 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJU4_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 6.200e-34
Identity = 65/102 (63.73%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:    1 AKVFEEQRKKSKELHISPTGNGVFNVTKDATTYGNRVELRFGIDSAETEVTCTCMMIVRWKIPCCDIIAVGRALSKADEVMALIDKAYHLETYRGLYEDNRF 306
            AK FE QR KS  LH S TGNG F V K  + YGNRV L FG D   T +TCTC    R+KIPCCDIIAVGRAL K+DEVM+ ID AYHL+TYR LY ++RF
Sbjct:  209 AKEFEAQRAKSSNLHSSATGNGNFTVRKLGSNYGNRVGLEFGTDGVVTRMTCTCGYTTRFKIPCCDIIAVGRALDKSDEVMSSIDPAYHLDTYRALYAESRF 310
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BLAST of mRNA_H-elongata_contig113030.1058.1 vs. uniprot
Match: A0A6H5KEB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB7_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 3.690e-32
Identity = 63/102 (61.76%), Postives = 71/102 (69.61%), Query Frame = 1 
Query:    1 AKVFEEQRKKSKELHISPTGNGVFNVTKDATTYGNRVELRFGIDSAETEVTCTCMMIVRWKIPCCDIIAVGRALSKADEVMALIDKAYHLETYRGLYEDNRF 306
            AK FE QR KS  LH S TGNG F V K  + YGNRV L FG D   T +TCTC     +KIPC DI+AVGRAL K+DEVM+ ID AYHL+TYR LY D+RF
Sbjct:  131 AKEFEAQRAKSGNLHSSATGNGNFTVRKLGSNYGNRVGLEFGTDGVVTRMTCTCGYTTGFKIPCSDIVAVGRALDKSDEVMSSIDPAYHLDTYRALYADSRF 232
[Close]
BLAST of mRNA_H-elongata_contig113030.1058.1 vs. uniprot
Match: A0A6H5K0L7_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L7_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 3.040e-30
Identity = 63/103 (61.17%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:    1 AKVFEEQRKKSKELHISPTGNGVFNVTKDATTYGNRVELRFG-IDSAETEVTCTCMMIVRWKIPCCDIIAVGRALSKADEVMALIDKAYHLETYRGLYEDNRF 306
            AK +  QRKKS  LH S TGN  F V K  + YGNRV L FG  D   T ++CTC    R+KIPCCDIIAVGR L+K+DEVMA ID AYHL+TYR LY D+RF
Sbjct:  219 AKEYGAQRKKSSNLHSSATGNCNFTVRKRGSQYGNRVRLEFGGTDGGVTLMSCTCGFTTRFKIPCCDIIAVGRVLNKSDEVMASIDPAYHLDTYRALYGDSRF 321
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig113030.1058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KJU4_9PHAE6.200e-3463.73MULE domain-containing protein n=6 Tax=Ectocarpus ... [more]
A0A6H5KEB7_9PHAE3.690e-3261.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0L7_9PHAE3.040e-3061.17MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig113030contigH-elongata_contig113030:409..1388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size311
Cds size309
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig113030.1058.1prot_H-elongata_contig113030.1058.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig113030 409..1388 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929651.400461-CDS-H-elongata_contig113030:408..4461622929651.400461-CDS-H-elongata_contig113030:408..446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113030 409..446 +
1691679106.003362-CDS-H-elongata_contig113030:408..4461691679106.003362-CDS-H-elongata_contig113030:408..446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113030 409..446 +
1622929651.4167037-CDS-H-elongata_contig113030:779..9581622929651.4167037-CDS-H-elongata_contig113030:779..958Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113030 780..958 +
1691679106.0109656-CDS-H-elongata_contig113030:779..9581691679106.0109656-CDS-H-elongata_contig113030:779..958Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113030 780..958 +
1622929651.430457-CDS-H-elongata_contig113030:1296..13881622929651.430457-CDS-H-elongata_contig113030:1296..1388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113030 1297..1388 +
1691679106.0181794-CDS-H-elongata_contig113030:1296..13881691679106.0181794-CDS-H-elongata_contig113030:1296..1388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig113030 1297..1388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig113030.1058.1

>prot_H-elongata_contig113030.1058.1 ID=prot_H-elongata_contig113030.1058.1|Name=mRNA_H-elongata_contig113030.1058.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
AKVFEEQRKKSKELHISPTGNGVFNVTKDATTYGNRVELRFGIDSAETEV
TCTCMMIVRWKIPCCDIIAVGRALSKADEVMALIDKAYHLETYRGLYEDN
RFR
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mRNA from alignment at H-elongata_contig113030:409..1388+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig113030.1058.1 ID=mRNA_H-elongata_contig113030.1058.1|Name=mRNA_H-elongata_contig113030.1058.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=980bp|location=Sequence derived from alignment at H-elongata_contig113030:409..1388+ (Himanthalia elongata Himel1 dioecious)
GCTAAAGTCTTCGAGGAGCAGCGGAAGAAGTCGAAAGAGTGAGTGTGCCT
ACAGGTACAAGTGATCCCCTATACGCCCGGGAGAAAATTCCCGTACAAGT
TGTTGCCAAGAACATTATACTTGTCGTGTTTGGTTGTGTCTGTTTCTGTG
TATTGAATATGGAGTCTCAGTTGTTTATCTATCACAACAGAAAAGTAAAA
AAATGTCTCCCGACGTGTTGTGCCGGATCGAGGGCGGGAGGTACACCGGA
TCCCCTCCACTTGAACGGCTACATCCCCACCATGACAATTATTATGTGAC
GTTAATTTGACTTCTTCGTCTGTTTCTCTTTTGACGTCCATTTTGTATTC
AATGCCTCGATTTCACGGCAGGCTGCACATTAGTCCCACCGGCAACGGTG
TTTTTAACGTCACCAAAGACGCCACTACCTACGGCAACCGGGTCGAGCTC
AGGTTCGGAATAGACAGTGCAGAGACAGAGGTCACGTGCACGTGCATGAT
GATCGTCCGGTGGAAAATCCCGTGCTGTGACATCATCGCCGTCGGCAGAG
GTGAGCACCTCAGTCTCCCCTGTTTGTGCATTCTTCGTACGGCAGTCTTG
CGCGCGGGGGTTTCGGCCGTCCAAGCACGTCACCCGTCGTTATGTCTTTT
CGTTAAAAATTAAATAAATAAAAACTATTGAGAACGTATGGGTAGGTTCG
ATTCTGTGTTATTCGCAATACATAAAAAAAATTACATATTGTGATGATTA
GACAAAAGTGACGCATGCAGCCATTCAGCGTGAGTAATACAACTTTGTTA
CCTCTTAGGCGGCAAAGTGTCACGTTTCCATCATTGACGCGCCTCTTCCG
TTTCATTTTGTTTGTCATGCCTTTTGTCTGCCATGCAGCGTTGAGCAAGG
CGGACGAGGTCATGGCACTTATCGACAAGGCCTACCACCTCGAGACCTAC
CGGGGCCTATACGAGGACAATAGATTCCGG
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Coding sequence (CDS) from alignment at H-elongata_contig113030:409..1388+

>mRNA_H-elongata_contig113030.1058.1 ID=mRNA_H-elongata_contig113030.1058.1|Name=mRNA_H-elongata_contig113030.1058.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig113030:409..1388+ (Himanthalia elongata Himel1 dioecious)
GCTAAAGTCTTCGAGGAGCAGCGGAAGAAGTCGAAAGAGCTAAAGTCTTC
GAGGAGCAGCGGAAGAAGTCGAAAGAGCTGCACATTAGTCCCACCGGCAA
CGGTGTTTTTAACGTCACCAAAGACGCCACTACCTACGGCAACCGGGTCG
AGCTCAGGTTCGGAATAGACAGTGCAGAGACAGAGGTCACGTGCACGTGC
ATGATGATCGTCCGGTGGAAAATCCCGTGCTGTGACATCATCGCCGTCGG
CAGAGGCTGCACATTAGTCCCACCGGCAACGGTGTTTTTAACGTCACCAA
AGACGCCACTACCTACGGCAACCGGGTCGAGCTCAGGTTCGGAATAGACA
GTGCAGAGACAGAGGTCACGTGCACGTGCATGATGATCGTCCGGTGGAAA
ATCCCGTGCTGTGACATCATCGCCGTCGGCAGAGCGTTGAGCAAGGCGGA
CGAGGTCATGGCACTTATCGACAAGGCCTACCACCTCGAGACCTACCGGG
GCCTATACGAGGACAATAGATTCCGGCGTTGAGCAAGGCGGACGAGGTCA
TGGCACTTATCGACAAGGCCTACCACCTCGAGACCTACCGGGGCCTATAC
GAGGACAATAGATTCCGG
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