mRNA_H-elongata_contig112839.1050.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig112839.1050.1 vs. uniprot
Match: A0A6H5KIV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIV1_9PHAE) HSP 1 Score: 210 bits (535), Expect = 5.060e-63 Identity = 108/195 (55.38%), Postives = 143/195 (73.33%), Query Frame = 1
Query: 7 GSQRQYQCLELMKEPDAYILSCSMLLTVVSGLFIAGRYKMVAQRHFSDADRFFSVLGSVASLFNGAGRIVFGLALDKFGCFATLVVLSTSTSALLLTLALAPETKGLFFLVICLVLFLFGGNFATYPALTADIFGATTAGPNYGLVFMLYGFGSFAIMLWLS-KLTTSSQIFLSCAALSSGGTVSVIILWARRLR 588
+RQ + EL+++ D Y L+ +ML T VSGL+IAG YK +A+ F +ADRF S+LGSVASLFN +GR++ GL++D+FGCFATL+V + S + LLL L L + FF+ ICL+ L+G NFA YP L AD+FGATTAGPNYGLVFM++G GSF MLWL+ + TS QIFL CA +S GT +V +LW+R+ R
Sbjct: 241 AGERQLEVWELLRDIDFYHLAATMLCTAVSGLYIAGNYKGIARDIFPNADRFLSILGSVASLFNASGRVIGGLSVDRFGCFATLLVQAGSATCLLLILCLVQANRPSFFVAICLMHSLYGSNFAIYPTLAADLFGATTAGPNYGLVFMVFGVGSFLFMLWLATEAKTSGQIFLMCACISLSGTANVALLWSRQRR 435
BLAST of mRNA_H-elongata_contig112839.1050.1 vs. uniprot
Match: D8LLE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLE8_ECTSI) HSP 1 Score: 211 bits (538), Expect = 4.180e-62 Identity = 109/193 (56.48%), Postives = 143/193 (74.09%), Query Frame = 1
Query: 13 QRQYQCLELMKEPDAYILSCSMLLTVVSGLFIAGRYKMVAQRHFSDADRFFSVLGSVASLFNGAGRIVFGLALDKFGCFATLVVLSTSTSALLLTLALAPETKGLFFLVICLVLFLFGGNFATYPALTADIFGATTAGPNYGLVFMLYGFGSFAIMLWLS-KLTTSSQIFLSCAALSSGGTVSVIILWARRLR 588
+RQ + EL++E D Y L+ +ML T VSGL+IAG YK +A+ F +ADRF S+LGSVASLFN +GR++ GL++D+FGCFATL+V + S + LLL L L + FF+ ICL+ L+G NFA YP L AD+FGATTAGPNYGLVFM++G GSF MLWL+ + TS QIFL CA +S GT +V +LW+R+ R
Sbjct: 389 ERQLEVWELLRENDFYHLAATMLCTAVSGLYIAGNYKGIARDIFPNADRFLSILGSVASLFNASGRVIGGLSVDRFGCFATLLVQAGSATCLLLILCLVQANRPSFFVAICLMHSLYGSNFAIYPTLAADLFGATTAGPNYGLVFMVFGVGSFLFMLWLATEAKTSGQIFLMCACISLSGTANVALLWSRQRR 581
BLAST of mRNA_H-elongata_contig112839.1050.1 vs. uniprot
Match: A0A7V5SSN7_9BACT (MFS transporter n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7V5SSN7_9BACT) HSP 1 Score: 115 bits (289), Expect = 4.950e-27 Identity = 59/152 (38.82%), Postives = 90/152 (59.21%), Query Frame = 1
Query: 22 YQCLELMKEPDAYILSCSMLLTVVSGLFIAGRYKMVAQRHFS-DADRFFSVLGSVASLFNGAGRIVFGLALDKFGCFATLVVLSTSTSALLLTLALAPETKGLFFLVICLVLFLFGGNFATYPALTADIFGATTAGPNYGLVFMLYGFGSFA 474
Y E++K P +++ C +LT +GLF G YK + + D+F S +G+ A+LFNG GRIV+G+ D+ G T++ + + + + TL L P + +F + +C++ F FGGNF+ YP T D+FGA GPNYG+VF YG A
Sbjct: 247 YNRNEIIKMPQFWMIWCMFILTAAAGLFTIGNYKNFGKANNPLITDQFLSDIGAWAALFNGLGRIVWGMLSDQIGYKKTMITMFLTQAIFMFTLILTPANQYIFLIWVCMIYFCFGGNFSLYPTATTDLFGAKYLGPNYGIVFTAYGIAGVA 398
BLAST of mRNA_H-elongata_contig112839.1050.1 vs. uniprot
Match: A0A524EYH4_9ARCH (MFS transporter n=1 Tax=Candidatus Lokiarchaeota archaeon TaxID=2053489 RepID=A0A524EYH4_9ARCH) HSP 1 Score: 113 bits (282), Expect = 4.660e-26 Identity = 66/193 (34.20%), Postives = 100/193 (51.81%), Query Frame = 1
Query: 13 QRQYQCLELMKEPDAYILSCSMLLTVVSGLFIAGRYKMVAQRH----FSDADRFFSVLGSVASLFNGAGRIVFGLALDKFGCFATLVVLSTSTSALLLTLALAPETKGLFFLVICLVLFLFGGNFATYPALTADIFGATTAGPNYGLVFMLYGFGSFAIMLWLSKLTTSSQ---IFLSCAALSSGGTVSVIIL 570
+ ++ E +K+P ++L +LT +GLF G YK+ Q +D + F ++GS+A+LFNG GR+ +G DK G T+ + + + L++ L + LFF+V+ L+ F FGGNF+ YP TAD FG GPNYG+VF YG + L + L S +F+ S G V L
Sbjct: 239 ETEFTRAETIKKPQFWMLWGMFILTAAAGLFTIGNYKVFGQTSTLGGIADKESFLVLIGSIAALFNGLGRVAWGFLADKIGYKKTMYAMFGTQAVLMILLPFVGGSATLFFIVVNLIYFCFGGNFSLYPTATADTFGVKNLGPNYGIVFTAYGIAGISGALLATALRASIGFLGVFIIMGVFSMGAIVMAYFL 431
BLAST of mRNA_H-elongata_contig112839.1050.1 vs. uniprot
Match: A0A7S4DKP8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DKP8_HETAK) HSP 1 Score: 104 bits (259), Expect = 1.230e-22 Identity = 69/182 (37.91%), Postives = 101/182 (55.49%), Query Frame = 1
Query: 34 ELMKEPDAYILSCSMLLTVVSGLFIAGRYKMVAQRHFSDADRFFSVLGSVASLFNGAGR-IVFGLALDKFGCFATLVVLSTSTSALLLTLALAPETKGLFFLVICLVLFLFGGNFATYPALTADIFGATTAGPNYGLVFMLYGFGSFAIMLWLSKLTTSSQ--IFLSCAALSSGGTVSVIIL 570
EL++EP Y LS +LT + GLFIAG YK + DA + S++GSV S+ N AGR I++G D+FG L+VL+T ++LLLT L+ + LF + + +GGN+ YP TA +FG NYGLV+++ G + + WL + S I L C A+ G V ++L
Sbjct: 295 ELVREPQYYHLSFCFMLTAIGGLFIAGTYKTFGAQLKDDA--YLSMVGSVGSIANAAGRLIIWGPLSDRFGFQRALLVLTTCLASLLLTYPLSFSSPTLFMVWTSAIFLCYGGNYVVYPTATAQLFGLEHCAANYGLVWVVTGLTATIFITWLENGSGGSYQPIILGCMAVI--GLVMAVLL 472
BLAST of mRNA_H-elongata_contig112839.1050.1 vs. uniprot
Match: A0A7K4HHF1_9ARCH (OFA family MFS transporter n=1 Tax=Candidatus Lokiarchaeota archaeon TaxID=2053489 RepID=A0A7K4HHF1_9ARCH) HSP 1 Score: 102 bits (255), Expect = 2.910e-22 Identity = 65/191 (34.03%), Postives = 105/191 (54.97%), Query Frame = 1
Query: 34 ELMKEPDAYILSCSMLLTVVSGLFIAGRYKMVAQRHFSDA-------DRFFSVLGSVASLFNGAGRIVFGLALDKFGCFATLVVLSTSTSALLLTLALAPETKGLFFLVI-CLVLFLFGGNFATYPALTADIFGATTAGPNYGLVFMLYG----FGSFAIMLWLSKLTTSSQIFLSCAALSSGGTVSVIIL 570
+ +K P ++L + L+ +SGL + G + A+ + S + F ++GS+A+LFNG GRIV+G D T++V+ T T A+L+ + L+FLV+ C + F FGGNF+ +P TAD+FG+ GPNYG+VF YG G+ + L++S + +F+ A+S G + IL
Sbjct: 241 QTVKLPQFWMLWAAFALSAMSGLMVIGSFSAFAKTYSSPSVFKYIIGTSDFVLIGSLAALFNGLGRIVWGKLADMITYKKTMLVMFT-TQAILMFIYFTTNVSELYFLVVTCAIFFCFGGNFSLFPTATADLFGSKNLGPNYGIVFTAYGVAGFIGAVGVNLFVSIFGSYLILFIVMGAMSVGSAILAFIL 430
BLAST of mRNA_H-elongata_contig112839.1050.1 vs. uniprot
Match: A0A532T7Z9_9ARCH (MFS domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A532T7Z9_9ARCH) HSP 1 Score: 100 bits (249), Expect = 1.880e-21 Identity = 61/177 (34.46%), Postives = 98/177 (55.37%), Query Frame = 1
Query: 19 QYQCLELMKEPDAYILSCSMLLTVVSGLFIAGRYKMVAQRHFSDADRF--------FSVLGSVASLFNGAGRIVFGLALDKFGCFATLVVLSTSTSALLLTLALAPETKGLFFLVI-CLVLFLFGGNFATYPALTADIFGATTAGPNYGLVFMLYGFGSFAIMLWLSKLTTSSQIFL 522
++Q + +K P ++L + +L+ +SGL + G Y A+ D F F +GS+A+LFNGAGR+++GL D + + +++ ST A+L+ + L+F VI C + F FGGNF+ +P T D+FGA GPNYG+VF YG F + ++ L T+ +L
Sbjct: 228 EFQRKQTIKLPQFWLLWITFVLSAISGLMVIGSYASFAKTT-DVGDNFIYVIGTVDFVFIGSLAALFNGAGRVMWGLVAD-YMTYKKAMLIMFSTQAILMFIYFTTNINALYFAVITCAIYFCFGGNFSLFPTATTDLFGAKNLGPNYGIVFTAYGIAGFVGAVGVNLLVTAFGSYL 402
BLAST of mRNA_H-elongata_contig112839.1050.1 vs. uniprot
Match: A0A524F3U1_9ARCH (MFS transporter n=1 Tax=Candidatus Lokiarchaeota archaeon TaxID=2053489 RepID=A0A524F3U1_9ARCH) HSP 1 Score: 96.3 bits (238), Expect = 5.510e-20 Identity = 52/149 (34.90%), Postives = 83/149 (55.70%), Query Frame = 1
Query: 34 ELMKEPDAYILSCSMLLTVVSGLFIAGRYKMVAQR---HFSDADRFFSVLGSVASLFNGAGRIVFGLALDKFGCFATLVVLSTSTSALLLTLALAPETKGLFFLVICLVLFLFGGNFATYPALTADIFGATTAGPNYGLVFMLYGFGSF 471
E++K P ++L + +LT + GL G Y A+ + +A F ++GS+A+LFNG GRI +G D +++ + L++TL FF+ +C++ F +GGNFAT+P T+D+FG+ G NYG+VF YG F
Sbjct: 218 EMIKLPQFWMLWTAFILTAICGLMTIGAYSSFAKSDDTYLINATDFLIIVGSLAALFNGLGRIFWGKMSDVIFYKKAMMISFIIQAFLMITLFFTSGNNVFFFIWVCIIYFCYGGNFATFPTATSDLFGSKNLGENYGIVFTSYGIAGF 366
BLAST of mRNA_H-elongata_contig112839.1050.1 vs. uniprot
Match: A0A524FDC8_9ARCH (MFS transporter n=1 Tax=Candidatus Lokiarchaeota archaeon TaxID=2053489 RepID=A0A524FDC8_9ARCH) HSP 1 Score: 93.2 bits (230), Expect = 6.450e-20 Identity = 61/200 (30.50%), Postives = 105/200 (52.50%), Query Frame = 1
Query: 10 SQRQYQCLELMKEPDAYILSCSMLLTVVSGLFIAGRYKMVAQRHFSDADRF--------FSVLGSVASLFNGAGRIVFGLALDKFGCFATLVVLSTSTSALLLTLALAPETKGLFFLVI-CLVLFLFGGNFATYPALTADIFGATTAGPNYGLVFMLYG----FGSFAIMLWLSKLTTSSQIFLSCAALSSGGTVSVIIL 570
S +++ E +K P ++L + +L+ +SGL + G Y A + D + F ++GS+A+LFNG GRI +G D +++++ + L+ L ++FLVI C + F FGGNF+ +P TAD+FG+ GPNYG+VF YG G+ + L+++ + +F+ A +S G V ++
Sbjct: 27 SGEEFERTETIKLPQFWMLWLAFVLSAMSGLMVIGSYAAFA-KSVDSLDNYIYVIGTADFVLVGSLAALFNGLGRITWGQLADLITYKKSMLIMFLVQAGLMF-LYFTTNGNAIYFLVITCAIYFCFGGNFSLFPTATADLFGSKNLGPNYGIVFTAYGVAGFIGAVGVNLFVTAFGSYLLLFIVMAFMSIGSAVLAFLI 224
BLAST of mRNA_H-elongata_contig112839.1050.1 vs. uniprot
Match: A0A7K4GSD5_9ARCH (OFA family MFS transporter n=1 Tax=Candidatus Lokiarchaeota archaeon TaxID=2053489 RepID=A0A7K4GSD5_9ARCH) HSP 1 Score: 95.1 bits (235), Expect = 1.660e-19 Identity = 62/197 (31.47%), Postives = 105/197 (53.30%), Query Frame = 1
Query: 19 QYQCLELMKEPDAYILSCSMLLTVVSGLFIAGRYKMVAQRHFSDADRF--------FSVLGSVASLFNGAGRIVFGLALDKFGCFATLVVLSTSTSALLLTLALAPETKGLFFLVI-CLVLFLFGGNFATYPALTADIFGATTAGPNYGLVFMLYG----FGSFAIMLWLSKLTTSSQIFLSCAALSSGGTVSVIIL 570
+++ + +K P ++L + L+ +SGL + G Y A + D F F ++GS+A+L NG GRIV+G D +++++ S A+L+ + L+FLVI C++ F FGGNF+ +P TAD+FG+ GPNYG+VF YG G+ + L++S + +F+ +S G + I+
Sbjct: 228 EFERSQTVKLPQFWMLWTAFALSAMSGLMVIGSYAAFA-KSVDAGDNFLYTIGTSDFVLIGSLAALLNGLGRIVWGKLADMITYKKSMLIMF-SVQAILMFIYFTTNMNSLYFLVITCVIYFCFGGNFSLFPTATADLFGSKNLGPNYGIVFTAYGVAGFIGAVGVNLFVSIFGSYLILFIVMGIMSVGSAILAYII 422 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112839.1050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig112839.1050.1 >prot_H-elongata_contig112839.1050.1 ID=prot_H-elongata_contig112839.1050.1|Name=mRNA_H-elongata_contig112839.1050.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=196bp APGSQRQYQCLELMKEPDAYILSCSMLLTVVSGLFIAGRYKMVAQRHFSDback to top mRNA from alignment at H-elongata_contig112839:57..1678+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig112839.1050.1 ID=mRNA_H-elongata_contig112839.1050.1|Name=mRNA_H-elongata_contig112839.1050.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1622bp|location=Sequence derived from alignment at H-elongata_contig112839:57..1678+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig112839:57..1678+ >mRNA_H-elongata_contig112839.1050.1 ID=mRNA_H-elongata_contig112839.1050.1|Name=mRNA_H-elongata_contig112839.1050.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1176bp|location=Sequence derived from alignment at H-elongata_contig112839:57..1678+ (Himanthalia elongata Himel1 dioecious)back to top |