mRNA_H-elongata_contig112823.1049.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112823.1049.1
Unique NamemRNA_H-elongata_contig112823.1049.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig112823.1049.1 vs. uniprot
Match: D7FJ42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ42_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.680e-29
Identity = 105/212 (49.53%), Postives = 113/212 (53.30%), Query Frame = 1 
Query:    1 VVVWSTGWVMAEKATKEVGIDGLQEEYGPFTEADIFRLAPTDDEREARKRDLVATREKARLAKKAKKTARRGKXXXXXXXXXXXXXXSPLKHGAAVLSSGNDDIDHIDGRKTSAGVHGKGAGEAAKSTGRKKRRIEKKETMVRMGAGVGGGASQRSVGPSGGQGSSGVARAAAEVVKKNKEDSKSYASLFGRKDVSNENLFIATAGHRYTLG 636
            VV+ STGWVM+EKATKEVGI GLQEEYGPFTE DI  LAPTD+ERE R R L+  REKARLAKK         XXXXXXXXXXXXXX                                                                      G S G  S+ +A AAAE VKKNKE SK YASLFG+KDVSNE+LFIATAGHRY LG
Sbjct:  135 VVLMSTGWVMSEKATKEVGIAGLQEEYGPFTEDDIVGLAPTDEERETRTRQLITKREKARLAKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN------------GASAGPNSARLAGAAAEAVKKNKEASKVYASLFGKKDVSNEHLFIATAGHRYNLG 334
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BLAST of mRNA_H-elongata_contig112823.1049.1 vs. uniprot
Match: A0A7S3H2A3_9STRA (Replication termination factor 2 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H2A3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.020e-8
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 VVVWSTGWVMAEKATKEVGIDGLQEEYGPFTEADIFRLAPTDDEREARKRDLVATR 168
            V +WSTG+V++EKA KE+GI+ LQ EYGPF   D+ +L PT  E EA+   +V  R
Sbjct:  153 VAIWSTGYVLSEKAIKELGIEALQSEYGPFQAEDLVKLIPTQFELEAQTAQMVQRR 208
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BLAST of mRNA_H-elongata_contig112823.1049.1 vs. uniprot
Match: A0A482RUH5_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RUH5_9ARCH)

HSP 1 Score: 58.9 bits (141), Expect = 1.230e-7
Identity = 27/67 (40.30%), Postives = 45/67 (67.16%), Query Frame = 1 
Query:    1 VVVWSTGWVMAEKATKEVGIDGLQEEYGPFTEADIFRLAPTDDEREARKRDLVATREKARLAKKAKK 201
            V +W +G V+++KA KE+G++ LQ EYGPFTE D+ RL P + + +A +  +   R++   ++KA K
Sbjct:   62 VAIWPSGLVLSDKAVKELGVEALQAEYGPFTELDLVRLVPPEQDMDAVRAHMHQRRQQKGGSRKAGK 128
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BLAST of mRNA_H-elongata_contig112823.1049.1 vs. uniprot
Match: A0A836CNB3_9STRA (Rtf2 RING-finger-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNB3_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.240e-7
Identity = 25/45 (55.56%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    4 VVWSTGWVMAEKATKEVGIDGLQEEYGPFTEADIFRLAPTDDERE 138
            ++ STGWV++++A  EVGI+GLQ EYGPF + D+ RLAP  DE++
Sbjct:  129 IIRSTGWVISDRAIAEVGIEGLQAEYGPFVQDDVMRLAPDKDEQQ 173
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BLAST of mRNA_H-elongata_contig112823.1049.1 vs. uniprot
Match: W7TG44_9STRA (Replication termination factor 2 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TG44_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.610e-6
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 VVVWSTGWVMAEKATKEVGIDGLQEEYGPFTEADIFRLAPTDDE 132
            VV+ STGWV++E+A KEVG   LQ+EYGPF   D+ RL P ++E
Sbjct:  159 VVIRSTGWVLSERALKEVGAASLQDEYGPFDSDDLIRLVPDEEE 202
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BLAST of mRNA_H-elongata_contig112823.1049.1 vs. uniprot
Match: A0A6V1S5E2_HETAK (Replication termination factor 2 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S5E2_HETAK)

HSP 1 Score: 55.1 bits (131), Expect = 1.810e-5
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 VVVWSTGWVMAEKATKEVGIDGLQEEYGPFTEA-DIFRLAPTDDE 132
            VVVW TGWV++++A +EVG   LQ EYGPF    D+ RLAP +++
Sbjct:  134 VVVWPTGWVLSDRALREVGAPALQAEYGPFRPGEDVVRLAPPEED 178
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BLAST of mRNA_H-elongata_contig112823.1049.1 vs. uniprot
Match: A0A7S2NS41_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NS41_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 8.090e-5
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   25 VMAEKATKEVGIDGLQEEYGPFTEADIFRLAPTDDEREARKRDL 156
            V++EKA K++G+D LQEEYGPF E ++ RLAP  D  E  K DL
Sbjct:  172 VLSEKAIKQMGVDSLQEEYGPFEERNLVRLAPPADMMEKIKEDL 215
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112823.1049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FJ42_ECTSI1.680e-2949.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3H2A3_9STRA3.020e-851.79Replication termination factor 2 n=1 Tax=Spumella ... [more]
A0A482RUH5_9ARCH1.230e-740.30Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A836CNB3_9STRA1.240e-755.56Rtf2 RING-finger-domain-containing protein n=1 Tax... [more]
W7TG44_9STRA1.610e-656.82Replication termination factor 2 n=3 Tax=Monodopsi... [more]
A0A6V1S5E2_HETAK1.810e-553.33Replication termination factor 2 n=1 Tax=Heterosig... [more]
A0A7S2NS41_9STRA8.090e-556.82Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112823contigH-elongata_contig112823:1193..2128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.1
Seed ortholog evalue1e-20
Seed eggNOG ortholog2880.D7FJ42
Preferred nameRTFDC1
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006274,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010453,GO:0019222,GO:0031494,GO:0034641,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044424,GO:0044464,GO:0045595,GO:0046483,GO:0050789,GO:0050793,GO:0050794,GO:0060255,GO:0065007,GO:0071170,GO:0071171,GO:0071514,GO:0071515,GO:0071516,GO:0071704,GO:0090304,GO:1901360,GO:1901576,GO:2000241
EggNOG free text desc.nuclear DNA replication termination
EggNOG OGsKOG3113@1,KOG3113@2759
COG Functional cat.N
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF602
Ec32 orthologEc-10_000050.1
Exons2
Model size639
Cds size612
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112823.1049.1prot_H-elongata_contig112823.1049.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112823 1193..2101 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929650.145009-CDS-H-elongata_contig112823:1192..17591622929650.145009-CDS-H-elongata_contig112823:1192..1759Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112823 1193..1759 -
1691679105.3649063-CDS-H-elongata_contig112823:1192..17591691679105.3649063-CDS-H-elongata_contig112823:1192..1759Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112823 1193..1759 -
1622929650.158267-CDS-H-elongata_contig112823:2056..21011622929650.158267-CDS-H-elongata_contig112823:2056..2101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112823 2057..2101 -
1691679105.375604-CDS-H-elongata_contig112823:2056..21011691679105.375604-CDS-H-elongata_contig112823:2056..2101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112823 2057..2101 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929650.1710477-UTR-H-elongata_contig112823:2101..21281622929650.1710477-UTR-H-elongata_contig112823:2101..2128Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112823 2102..2128 -
1691679105.3831048-UTR-H-elongata_contig112823:2101..21281691679105.3831048-UTR-H-elongata_contig112823:2101..2128Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112823 2102..2128 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112823.1049.1

>prot_H-elongata_contig112823.1049.1 ID=prot_H-elongata_contig112823.1049.1|Name=mRNA_H-elongata_contig112823.1049.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=204bp
MAEKATKEVGIDGLQEEYGPFTEADIFRLAPTDDEREARKRDLVATREKA
RLAKKAKKTARRGKAAASSPGGKASSSSSPLKHGAAVLSSGNDDIDHIDG
RKTSAGVHGKGAGEAAKSTGRKKRRIEKKETMVRMGAGVGGGASQRSVGP
SGGQGSSGVARAAAEVVKKNKEDSKSYASLFGRKDVSNENLFIATAGHRY
TLG*
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mRNA from alignment at H-elongata_contig112823:1193..2128-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112823.1049.1 ID=mRNA_H-elongata_contig112823.1049.1|Name=mRNA_H-elongata_contig112823.1049.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=936bp|location=Sequence derived from alignment at H-elongata_contig112823:1193..2128- (Himanthalia elongata Himel1 dioecious)
GTGGTTGTGTGGAGCACTGGTTGGGTCATGGCCGAAAAGGCCACCAAGGA
GGTCGGCATCGACGGGCTGCAGGTAAACGGGAATCGCAGTAACGGGAGTA
GCTTGTGGTAAAGCAGACGCGGCGCAATGACGCCTCCTGGTGGAGCTGAG
ATCCTTTAGAGGTGAATATCTAATAAGAAACGGTAGTCTAAGGATAACCC
TAACCCTAAGAAACGGTAGTCTAAGGTTTAAGCGCTATCGCTCGCGCGGG
CGAGACCCCTAACCCTAACCCAATGACCTTTCTTTCACAAGCAATATTAG
TGTAATAGTAGTAACCCCAAATACCTCCAATGGACATGGCACACGCCGTT
GCTCGGCTACTTCTTGCAGGAGGAATACGGACCGTTCACGGAAGCGGACA
TTTTCCGGCTGGCCCCAACAGACGACGAACGCGAAGCACGGAAAAGGGAC
CTCGTCGCCACACGGGAAAAAGCGCGCCTCGCGAAGAAGGCAAAAAAGAC
AGCCAGGCGCGGCAAGGCGGCCGCGTCCTCCCCAGGGGGGAAGGCCTCGT
CATCATCGTCTCCATTGAAACATGGAGCAGCCGTTTTGTCATCCGGTAAT
GACGACATCGACCACATCGACGGCCGCAAGACGAGTGCGGGCGTCCATGG
AAAGGGCGCCGGCGAAGCAGCCAAGAGTACCGGTCGTAAAAAGAGGAGGA
TAGAAAAGAAAGAAACGATGGTACGGATGGGGGCAGGGGTGGGAGGGGGC
GCCTCCCAGCGGAGTGTCGGGCCAAGCGGGGGACAGGGCTCTTCGGGGGT
AGCGCGGGCTGCGGCAGAGGTGGTGAAAAAGAACAAGGAAGACAGCAAGT
CGTACGCGTCGCTGTTTGGAAGAAAGGATGTGTCCAACGAGAACCTCTTC
ATCGCGACCGCTGGGCACCGCTACACTCTTGGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig112823:1193..2128-

>mRNA_H-elongata_contig112823.1049.1 ID=mRNA_H-elongata_contig112823.1049.1|Name=mRNA_H-elongata_contig112823.1049.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1224bp|location=Sequence derived from alignment at H-elongata_contig112823:1193..2128- (Himanthalia elongata Himel1 dioecious)
ATGGCCGAAAAGGCCACCAAGGAGGTCGGCATCGACGGGCTGCAGATGGC
CGAAAAGGCCACCAAGGAGGTCGGCATCGACGGGCTGCAGGAGGAATACG
GACCGTTCACGGAAGCGGACATTTTCCGGCTGGCCCCAACAGACGACGAA
CGCGAAGCACGGAAAAGGGACCTCGTCGCCACACGGGAAAAAGCGCGCCT
CGCGAAGAAGGCAAAAAAGACAGCCAGGCGCGGCAAGGCGGCCGCGTCCT
CCCCAGGGGGGAAGGCCTCGTCATCATCGTCTCCATTGAAACATGGAGCA
GCCGTTTTGTCATCCGGTAATGACGACATCGACCACATCGACGGCCGCAA
GACGAGTGCGGGCGTCCATGGAAAGGGCGCCGGCGAAGCAGCCAAGAGTA
CCGGTCGTAAAAAGAGGAGGATAGAAAAGAAAGAAACGATGGTACGGATG
GGGGCAGGGGTGGGAGGGGGCGCCTCCCAGCGGAGTGTCGGGCCAAGCGG
GGGACAGGGCTCTTCGGGGGTAGCGCGGGCTGCGGCAGAGGTGGTGAAAA
AGAACAAGGAAGACAGCAAGTCGTACGCGTCGCTGTTTGGAAGAAAGGAT
GTGTCCAACGAGAACCTCTTCATCGCGACCGCTGGGCACCGCTACACTCT
TGGGTAAGAGGAATACGGACCGTTCACGGAAGCGGACATTTTCCGGCTGG
CCCCAACAGACGACGAACGCGAAGCACGGAAAAGGGACCTCGTCGCCACA
CGGGAAAAAGCGCGCCTCGCGAAGAAGGCAAAAAAGACAGCCAGGCGCGG
CAAGGCGGCCGCGTCCTCCCCAGGGGGGAAGGCCTCGTCATCATCGTCTC
CATTGAAACATGGAGCAGCCGTTTTGTCATCCGGTAATGACGACATCGAC
CACATCGACGGCCGCAAGACGAGTGCGGGCGTCCATGGAAAGGGCGCCGG
CGAAGCAGCCAAGAGTACCGGTCGTAAAAAGAGGAGGATAGAAAAGAAAG
AAACGATGGTACGGATGGGGGCAGGGGTGGGAGGGGGCGCCTCCCAGCGG
AGTGTCGGGCCAAGCGGGGGACAGGGCTCTTCGGGGGTAGCGCGGGCTGC
GGCAGAGGTGGTGAAAAAGAACAAGGAAGACAGCAAGTCGTACGCGTCGC
TGTTTGGAAGAAAGGATGTGTCCAACGAGAACCTCTTCATCGCGACCGCT
GGGCACCGCTACACTCTTGGGTAA
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