mRNA_H-elongata_contig112811.1048.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig112811.1048.1 vs. uniprot
Match: A0A6H5KXQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXQ0_9PHAE) HSP 1 Score: 259 bits (662), Expect = 7.800e-79 Identity = 137/154 (88.96%), Postives = 144/154 (93.51%), Query Frame = 1
Query: 1 RNMELLAYFTCCNLQPAHLLLALRMAMAAAFKGKNFITAASFAQRLLELPDLSSERHADLRNK---AQKVLQKSQQMARNEHTLDYDERNPFEVDCQALRPIYRGTPLVKCPYCGSAYQPAAKGSVCVTCGLSQIGVKTLGLVTSSSASAGGKR 453
RNMELLAYFTCCNLQPAHLLLALRMAMA+AFKGKNFITAASFAQRLLELPDLSSERHADLR K AQKVLQKSQQMARNEHTLDYDERNPFEVDCQ+L+PIYRGTP KCPYCGSAY +AKG+VCVTCGLSQIGV+TLGLVT+SSA GGKR
Sbjct: 741 RNMELLAYFTCCNLQPAHLLLALRMAMASAFKGKNFITAASFAQRLLELPDLSSERHADLRLKVGLAQKVLQKSQQMARNEHTLDYDERNPFEVDCQSLKPIYRGTPSCKCPYCGSAYPLSAKGTVCVTCGLSQIGVETLGLVTTSSA--GGKR 892
BLAST of mRNA_H-elongata_contig112811.1048.1 vs. uniprot
Match: D8LL95_ECTSI (Coatomer subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL95_ECTSI) HSP 1 Score: 262 bits (669), Expect = 1.810e-78 Identity = 136/151 (90.07%), Postives = 143/151 (94.70%), Query Frame = 1
Query: 1 RNMELLAYFTCCNLQPAHLLLALRMAMAAAFKGKNFITAASFAQRLLELPDLSSERHADLRNKAQKVLQKSQQMARNEHTLDYDERNPFEVDCQALRPIYRGTPLVKCPYCGSAYQPAAKGSVCVTCGLSQIGVKTLGLVTSSSASAGGKR 453
R+MELLAYFTCCNLQPAHLLLALRMAMA+AFKGKNFITAASFAQRLLELPDLSSERHADLR KAQKVLQKSQQMARNEHTLDYDERNPFEVDCQ+L+PIYRGTP KCPYCGSAY +AKG VCVTCGLSQIGV+TLGLVT+SSA GGKR
Sbjct: 1110 RSMELLAYFTCCNLQPAHLLLALRMAMASAFKGKNFITAASFAQRLLELPDLSSERHADLRIKAQKVLQKSQQMARNEHTLDYDERNPFEVDCQSLKPIYRGTPSCKCPYCGSAYPLSAKGMVCVTCGLSQIGVETLGLVTTSSA--GGKR 1258
BLAST of mRNA_H-elongata_contig112811.1048.1 vs. uniprot
Match: A0A835Z8J6_9STRA (Coatomer subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8J6_9STRA) HSP 1 Score: 222 bits (566), Expect = 2.020e-64 Identity = 110/147 (74.83%), Postives = 131/147 (89.12%), Query Frame = 1
Query: 1 RNMELLAYFTCCNLQPAHLLLALRMAMAAAFKGKNFITAASFAQRLLELPDLSSERHADLRNKAQKVLQKSQQMARNEHTLDYDERNPFEVDCQALRPIYRGTPLVKCPYCGSAYQPAAKGSVCVTCGLSQIGVKTLGLVTSSSASA 441
R+MEL AYFT CNLQPAHLLLALRMAM AFK KNFITAASFAQRLLELPDL+SER+A+LR+KAQK+LQKSQQMARNE LDYDERNPF +DC L+PIYRG P+VKCPYC S+Y PA+ +VC TCG+SQ+GV+TLGLVT++++++
Sbjct: 1082 RSMELSAYFTHCNLQPAHLLLALRMAMGTAFKNKNFITAASFAQRLLELPDLASERNAELRDKAQKILQKSQQMARNEVDLDYDERNPFVIDCATLKPIYRGAPVVKCPYCSSSYSPASDKTVCQTCGISQVGVETLGLVTTTASTS 1228
BLAST of mRNA_H-elongata_contig112811.1048.1 vs. uniprot
Match: A0A7S2FV00_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FV00_9STRA) HSP 1 Score: 196 bits (499), Expect = 5.650e-60 Identity = 97/145 (66.90%), Postives = 118/145 (81.38%), Query Frame = 1
Query: 1 RNMELLAYFTCCNLQPAHLLLALRMAMAAAFKGKNFITAASFAQRLLELPDLSSERHADLRNKAQKVLQKSQQMARNEHTLDYDERNPFEVDCQALRPIYRGTPLVKCPYCGSAYQPAAKGSVCVTCGLSQIGVKTLGLVTSSSA 435
R EL AYFT CNLQPAHLLLAL+ AM + FK KN+ITAASFA RLLELP++SSE++ADL+ KAQKV+ KS++ RNEHTL YDERNPF++DCQA P+YRG+P+VKC YCGSAYQP +C TCG++ IGV+TLGL T S+
Sbjct: 161 RMTELWAYFTHCNLQPAHLLLALKSAMISGFKIKNYITAASFAHRLLELPEVSSEKNADLKGKAQKVILKSEKEGRNEHTLQYDERNPFDIDCQAFVPVYRGSPVVKCAYCGSAYQPECTNKLCTTCGIALIGVETLGLPTGRSS 305
BLAST of mRNA_H-elongata_contig112811.1048.1 vs. uniprot
Match: A0A7S3YID5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YID5_HETAK) HSP 1 Score: 194 bits (492), Expect = 8.910e-60 Identity = 101/145 (69.66%), Postives = 117/145 (80.69%), Query Frame = 1
Query: 1 RNMELLAYFTCCNLQPAHLLLALRMAMAAAFKGKNFITAASFAQRLLELPDLSSERHADLRNKAQKVLQKSQQMARNEHTLDYDERNPFEVDCQALRPIYRGTPLVKCPYCGSAYQPAAKGSVCVTCGLSQIGVKTLGLVTSSSA 435
R MEL AYFT NLQP HLLLALR+AMA+AFK KNFITAASFA+RLLELPD+SSE++ADL+ KAQKVLQKS+QM NEH LDYDERNPF VD L PIYRG+P V CP+C S YQP +C TC +SQIGV+T+GLV+ +A
Sbjct: 93 RQMELGAYFTHQNLQPGHLLLALRLAMASAFKHKNFITAASFARRLLELPDISSEKNADLKLKAQKVLQKSEQMGSNEHALDYDERNPFAVDAADLVPIYRGSPEVTCPFCASHYQPRHANGLCATCNISQIGVETIGLVSQVAA 237
BLAST of mRNA_H-elongata_contig112811.1048.1 vs. uniprot
Match: A0A7S3GXR2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXR2_9STRA) HSP 1 Score: 197 bits (502), Expect = 2.510e-58 Identity = 94/144 (65.28%), Postives = 120/144 (83.33%), Query Frame = 1
Query: 1 RNMELLAYFTCCNLQPAHLLLALRMAMAAAFKGKNFITAASFAQRLLELPDLSSERHADLRNKAQKVLQKSQQMARNEHTLDYDERNPFEVDCQALRPIYRGTPLVKCPYCGSAYQPAAKGSVCVTCGLSQIGVKTLGLVTSSS 432
R +EL AYFT CNLQP+HL+LAL+ AMA+AFK KNFI AASFA+RLLELPD++SE++AD R+KAQKVLQKS+Q RNE+T+DYDERNPF +DC L+P+Y+GTPLVKC YC + Y KG +C+ CG+S +G+ T+GLVT S+
Sbjct: 353 RGLELAAYFTHCNLQPSHLMLALKTAMASAFKNKNFINAASFARRLLELPDMNSEKNADSRSKAQKVLQKSEQQGRNEYTIDYDERNPFSLDCSTLKPLYKGTPLVKCSYCAACYAVDYKGKLCLICGISTVGLDTVGLVTQSA 496
BLAST of mRNA_H-elongata_contig112811.1048.1 vs. uniprot
Match: W7TRK7_9STRA (Coatomer subunit alpha n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRK7_9STRA) HSP 1 Score: 199 bits (506), Expect = 2.630e-56 Identity = 97/145 (66.90%), Postives = 124/145 (85.52%), Query Frame = 1
Query: 1 RNMELLAYFTCCNLQPAHLLLALRMAMAAAFKGKNFITAASFAQRLLELPDLSSERHADLRNKAQKVLQKSQQMARNEHTLDYDERNPFEVDCQALRPIYRGTPLVKCPYCGSAYQPAAKGSVCVTCGLSQIGVKTLGLVTSSSA 435
R +EL AYFT CNLQPAHLLLALRMAM +AFK +N+ITAASFA RLLE+P+++SE++A+LR KAQKVLQKS+QMARNEH ++YD+R F +DC+ L PI RG P +KC YCGS+Y P +KG +CVTCG+SQ+G++TLGLVTS+ +
Sbjct: 1125 RQIELSAYFTHCNLQPAHLLLALRMAMVSAFKFQNYITAASFAHRLLEMPEMASEKNAELRLKAQKVLQKSEQMARNEHAIEYDDRQAFVIDCRTLLPIPRGAPCLKCSYCGSSYTPESKGVLCVTCGISQVGLETLGLVTSAGS 1269
BLAST of mRNA_H-elongata_contig112811.1048.1 vs. uniprot
Match: A0A7S3GXJ7_9STRA (Coatomer subunit alpha n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GXJ7_9STRA) HSP 1 Score: 197 bits (502), Expect = 9.090e-56 Identity = 94/144 (65.28%), Postives = 120/144 (83.33%), Query Frame = 1
Query: 1 RNMELLAYFTCCNLQPAHLLLALRMAMAAAFKGKNFITAASFAQRLLELPDLSSERHADLRNKAQKVLQKSQQMARNEHTLDYDERNPFEVDCQALRPIYRGTPLVKCPYCGSAYQPAAKGSVCVTCGLSQIGVKTLGLVTSSS 432
R +EL AYFT CNLQP+HL+LAL+ AMA+AFK KNFI AASFA+RLLELPD++SE++AD R+KAQKVLQKS+Q RNE+T+DYDERNPF +DC L+P+Y+GTPLVKC YC + Y KG +C+ CG+S +G+ T+GLVT S+
Sbjct: 1110 RGLELAAYFTHCNLQPSHLMLALKTAMASAFKNKNFINAASFARRLLELPDMNSEKNADSRSKAQKVLQKSEQQGRNEYTIDYDERNPFSLDCSTLKPLYKGTPLVKCSYCAACYAVDYKGKLCLICGISTVGLDTVGLVTQSA 1253
BLAST of mRNA_H-elongata_contig112811.1048.1 vs. uniprot
Match: A0A7S2RES0_9STRA (Coatomer subunit alpha n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RES0_9STRA) HSP 1 Score: 186 bits (473), Expect = 7.310e-52 Identity = 94/143 (65.73%), Postives = 114/143 (79.72%), Query Frame = 1
Query: 1 RNMELLAYFTCCNLQPAHLLLALRMAMAAAFKGKNFITAASFAQRLLELPDLSSERHADLRNKAQKVLQKSQQMARNEHTLDYDERNPFEVDCQALRPIYRGTPLVKCPYCGSAYQPAAKGSVCVTCGLSQIGVKTLGLVTSS 429
R+ EL AY T CNLQP+HL LAL+ AM AFK KNFITAASFA+RLLELPD+SSE++A L+ KAQKV+ KS+QMARNEH L YDERNPF++D PIYRG+P+V+C YC +AY P K VC CGLS +GV+T+GLVT+S
Sbjct: 1110 RSTELWAYMTHCNLQPSHLFLALKFAMGEAFKIKNFITAASFARRLLELPDMSSEKNATLKVKAQKVVLKSEQMARNEHQLHYDERNPFDIDSDTFLPIYRGSPVVRCAYCNAAYSPDMKNKVCRACGLSLVGVETIGLVTAS 1252
BLAST of mRNA_H-elongata_contig112811.1048.1 vs. uniprot
Match: A0A7S1E1P1_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E1P1_9STRA) HSP 1 Score: 171 bits (432), Expect = 1.420e-51 Identity = 90/144 (62.50%), Postives = 106/144 (73.61%), Query Frame = 1
Query: 1 RNMELLAYFTCCNLQPAHLLLALRMAMAAAFKGKNFITAASFAQRLLELPDLSSERHADLRNKAQKVLQKSQQMARNEHTLDYDERNPFEVDCQALRPIYRGTPLVKCPYCGSAYQ-PAAKGSVCVTCGLSQIGVKTLGLVTSS 429
R+ EL AYF+ CNLQP HLLLALR AM AFK KN+I AA FA+RLLELPD++SER+ADLR KA KVLQKS+QMARNEH L YDE F +DC+ I GT +KCPYCGS Y+ K VC TC + +GV+T+GLVT S
Sbjct: 29 RSTELAAYFSHCNLQPVHLLLALRSAMGVAFKHKNYIAAAGFARRLLELPDMNSERNADLRVKATKVLQKSEQMARNEHELAYDESTSFTIDCEKFTAIKAGTVSIKCPYCGSNYEGDGMKNKVCRTCSFATVGVQTIGLVTGS 172 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112811.1048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig112811.1048.1 >prot_H-elongata_contig112811.1048.1 ID=prot_H-elongata_contig112811.1048.1|Name=mRNA_H-elongata_contig112811.1048.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp MELLAYFTCCNLQPAHLLLALRMAMAAAFKGKNFITAASFAQRLLELPDLback to top mRNA from alignment at H-elongata_contig112811:1207..2073- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig112811.1048.1 ID=mRNA_H-elongata_contig112811.1048.1|Name=mRNA_H-elongata_contig112811.1048.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=867bp|location=Sequence derived from alignment at H-elongata_contig112811:1207..2073- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig112811:1207..2073- >mRNA_H-elongata_contig112811.1048.1 ID=mRNA_H-elongata_contig112811.1048.1|Name=mRNA_H-elongata_contig112811.1048.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig112811:1207..2073- (Himanthalia elongata Himel1 dioecious)back to top |