mRNA_H-elongata_contig112784.1045.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig112784.1045.1 vs. uniprot
Match: A0A6H5J4R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4R7_9PHAE) HSP 1 Score: 147 bits (370), Expect = 2.990e-39 Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = 1
Query: 1 RANVVITSYNVLRMDADVLRDQGWLFLVLDEAHVLRNPATRTAKAARALRSDHRLGLTGTPIQNSVLELWSLFQFLMPG 237
RANVVITSYNVLR DADVL QGWL+LVLDEAH+LRNPATRTAKAARALRS+HR+GLTGTPIQNSVLELWSLF+FLMPG
Sbjct: 968 RANVVITSYNVLRTDADVLGKQGWLYLVLDEAHLLRNPATRTAKAARALRSNHRVGLTGTPIQNSVLELWSLFEFLMPG 1046
BLAST of mRNA_H-elongata_contig112784.1045.1 vs. uniprot
Match: D8LBB5_ECTSI (Essential abundant protein involved in regulation of transcription n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB5_ECTSI) HSP 1 Score: 145 bits (366), Expect = 1.040e-38 Identity = 70/79 (88.61%), Postives = 76/79 (96.20%), Query Frame = 1
Query: 1 RANVVITSYNVLRMDADVLRDQGWLFLVLDEAHVLRNPATRTAKAARALRSDHRLGLTGTPIQNSVLELWSLFQFLMPG 237
RANVVITSYNVLR DA+VL QGWL+LVLDEAH+LRNPATRTAKAARALRS+HR+GLTGTPIQNSVLELWSLF+FLMPG
Sbjct: 1837 RANVVITSYNVLRTDAEVLGKQGWLYLVLDEAHLLRNPATRTAKAARALRSNHRVGLTGTPIQNSVLELWSLFEFLMPG 1915
BLAST of mRNA_H-elongata_contig112784.1045.1 vs. uniprot
Match: A0A7S0BDZ4_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BDZ4_9RHOD) HSP 1 Score: 99.4 bits (246), Expect = 1.210e-24 Identity = 45/78 (57.69%), Postives = 58/78 (74.36%), Query Frame = 1
Query: 4 ANVVITSYNVLRMDADVLRDQGWLFLVLDEAHVLRNPATRTAKAARALRSDHRLGLTGTPIQNSVLELWSLFQFLMPG 237
A++V+TSY VL D + R W + VLDE HV++NP TR AKA R + + HRL L+GTPIQN+VLELW++F FLMPG
Sbjct: 30 ADLVVTSYEVLASDLEHFRSIRWNYQVLDEGHVIKNPKTRAAKAVRCISASHRLLLSGTPIQNTVLELWAIFDFLMPG 107
BLAST of mRNA_H-elongata_contig112784.1045.1 vs. uniprot
Match: A0A1B7N6B0_9AGAM (Uncharacterized protein n=2 Tax=Rhizopogon TaxID=5375 RepID=A0A1B7N6B0_9AGAM) HSP 1 Score: 104 bits (260), Expect = 2.130e-24 Identity = 47/79 (59.49%), Postives = 60/79 (75.95%), Query Frame = 1
Query: 1 RANVVITSYNVLRMDADVLRDQGWLFLVLDEAHVLRNPATRTAKAARALRSDHRLGLTGTPIQNSVLELWSLFQFLMPG 237
+ +VVITSY V+R D L D WL+ +LDE HV++N T+ KA +A+R+ HRL L+GTPIQN+VLELWSLF FLMPG
Sbjct: 1448 KKDVVITSYEVVRNDISTLEDFSWLYCILDEGHVIKNAKTKLTKAVKAIRAQHRLILSGTPIQNNVLELWSLFDFLMPG 1526
BLAST of mRNA_H-elongata_contig112784.1045.1 vs. uniprot
Match: S3C1C1_OPHP1 (Tata-binding protein-associated factor mot1 n=1 Tax=Ophiostoma piceae (strain UAMH 11346) TaxID=1262450 RepID=S3C1C1_OPHP1) HSP 1 Score: 104 bits (259), Expect = 2.900e-24 Identity = 45/79 (56.96%), Postives = 61/79 (77.22%), Query Frame = 1
Query: 1 RANVVITSYNVLRMDADVLRDQGWLFLVLDEAHVLRNPATRTAKAARALRSDHRLGLTGTPIQNSVLELWSLFQFLMPG 237
+ +++ITSY+V R D D+L W ++VLDE H+++NP T+ + A + L S+HRL LTGTPIQN+VLELWSLF FLMPG
Sbjct: 1416 KTDIIITSYDVCRNDVDILEKHNWNYVVLDEGHLIKNPRTKISMAVKKLASNHRLILTGTPIQNNVLELWSLFDFLMPG 1494
BLAST of mRNA_H-elongata_contig112784.1045.1 vs. uniprot
Match: A0A3D8RBA2_9HELO (Putative MOT1-transcriptional accessory protein n=2 Tax=Coleophoma TaxID=453209 RepID=A0A3D8RBA2_9HELO) HSP 1 Score: 103 bits (258), Expect = 3.960e-24 Identity = 46/79 (58.23%), Postives = 62/79 (78.48%), Query Frame = 1
Query: 1 RANVVITSYNVLRMDADVLRDQGWLFLVLDEAHVLRNPATRTAKAARALRSDHRLGLTGTPIQNSVLELWSLFQFLMPG 237
+ ++VITSY++ R DADVL W +LVLDE H+++NP + A ++L+S+HRL L+GTPIQN+VLELWSLF FLMPG
Sbjct: 1410 KTDIVITSYDICRNDADVLMPLNWNYLVLDEGHLIKNPRAKVTVAVKSLQSNHRLILSGTPIQNNVLELWSLFDFLMPG 1488
BLAST of mRNA_H-elongata_contig112784.1045.1 vs. uniprot
Match: G4N3K7_MAGO7 (TATA-binding protein-associated factor MOT1 n=7 Tax=Pyricularia TaxID=48558 RepID=G4N3K7_MAGO7) HSP 1 Score: 103 bits (258), Expect = 3.960e-24 Identity = 47/79 (59.49%), Postives = 62/79 (78.48%), Query Frame = 1
Query: 1 RANVVITSYNVLRMDADVLRDQGWLFLVLDEAHVLRNPATRTAKAARALRSDHRLGLTGTPIQNSVLELWSLFQFLMPG 237
+A++VITSY+V R D DV+ W ++VLDE H+++NP +T+ A + L S+HRL LTGTPIQN+VLELWSLF FLMPG
Sbjct: 1409 KADIVITSYDVCRNDIDVIDKYNWNYVVLDEGHLIKNPKAKTSIAVKRLMSNHRLILTGTPIQNNVLELWSLFDFLMPG 1487
BLAST of mRNA_H-elongata_contig112784.1045.1 vs. uniprot
Match: A0A1W2TMP8_ROSNE (Putative tata-binding protein-associated factor mot1 protein n=7 Tax=Fungi TaxID=4751 RepID=A0A1W2TMP8_ROSNE) HSP 1 Score: 103 bits (258), Expect = 3.960e-24 Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 1
Query: 7 NVVITSYNVLRMDADVLRDQGWLFLVLDEAHVLRNPATRTAKAARALRSDHRLGLTGTPIQNSVLELWSLFQFLMPG 237
++V+TSY V R DAD+L Q W ++VLDE H+++NP + + A + L S+HRL LTGTPIQN+VLELWSLF FLMPG
Sbjct: 1413 DIVVTSYEVCRNDADLLEKQSWNYIVLDEGHLIKNPKAKISLAVKKLASNHRLILTGTPIQNNVLELWSLFDFLMPG 1489
BLAST of mRNA_H-elongata_contig112784.1045.1 vs. uniprot
Match: A0A0L0NL35_TOLOC (Putative helicase mot1 n=2 Tax=Tolypocladium TaxID=29909 RepID=A0A0L0NL35_TOLOC) HSP 1 Score: 103 bits (258), Expect = 3.970e-24 Identity = 45/79 (56.96%), Postives = 61/79 (77.22%), Query Frame = 1
Query: 1 RANVVITSYNVLRMDADVLRDQGWLFLVLDEAHVLRNPATRTAKAARALRSDHRLGLTGTPIQNSVLELWSLFQFLMPG 237
+ ++VITSY+V R D D+L + W ++VLDE H+++NP + +A + L S+HRL LTGTPIQN+VLELWSLF FLMPG
Sbjct: 1412 KTDIVITSYDVCRNDTDILEEHNWNYMVLDEGHLIKNPKAKITQAVKRLVSNHRLILTGTPIQNNVLELWSLFDFLMPG 1490
BLAST of mRNA_H-elongata_contig112784.1045.1 vs. uniprot
Match: A0A0C3NT19_PISTI (Helicase ATP-binding domain-containing protein n=1 Tax=Pisolithus tinctorius Marx 270 TaxID=870435 RepID=A0A0C3NT19_PISTI) HSP 1 Score: 103 bits (257), Expect = 5.400e-24 Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 1
Query: 7 NVVITSYNVLRMDADVLRDQGWLFLVLDEAHVLRNPATRTAKAARALRSDHRLGLTGTPIQNSVLELWSLFQFLMPG 237
+VVITSY V+R D L D WL+ VLDE HV+RN T+ KA +A+++ HRL L+GTPIQN+VLELWSLF FLMPG
Sbjct: 1454 DVVITSYEVVRNDISSLEDINWLYCVLDEGHVIRNAKTKLTKAVKAIQAQHRLILSGTPIQNNVLELWSLFDFLMPG 1530 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112784.1045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig112784.1045.1 >prot_H-elongata_contig112784.1045.1 ID=prot_H-elongata_contig112784.1045.1|Name=mRNA_H-elongata_contig112784.1045.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp RANVVITSYNVLRMDADVLRDQGWLFLVLDEAHVLRNPATRTAKAARALRback to top mRNA from alignment at H-elongata_contig112784:68..801- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig112784.1045.1 ID=mRNA_H-elongata_contig112784.1045.1|Name=mRNA_H-elongata_contig112784.1045.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=734bp|location=Sequence derived from alignment at H-elongata_contig112784:68..801- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig112784:68..801- >mRNA_H-elongata_contig112784.1045.1 ID=mRNA_H-elongata_contig112784.1045.1|Name=mRNA_H-elongata_contig112784.1045.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig112784:68..801- (Himanthalia elongata Himel1 dioecious)back to top |