mRNA_H-elongata_contig112759.1043.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112759.1043.1
Unique NamemRNA_H-elongata_contig112759.1043.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig112759.1043.1 vs. uniprot
Match: A0A6H5JFK6_9PHAE (START domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFK6_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 5.980e-69
Identity = 110/145 (75.86%), Postives = 120/145 (82.76%), Query Frame = 1 
Query:    1 RGADPMSRETKILYQLRCGDDEFVRIVWGSFRAAGVAWARDFCFLQHCCTTTDPDTGERLFAVVAGSIERSEVPDMEALCKRIRSKIKNSGYVFREAVDG-TIRASYVVNVNPGGWIPSKIVNIICTNQAMNVSRVANSLANTAK 432
            R +DPMSRETKILYQ+ C + E +RI WGSF+AAGVAWARDFCFLQH   +TDP TGERLF VV+GSIER EVPDME LCKRIRS +K SG VFRE  DG  +RA+YVVNVNP GWIPSKIVNIICTNQAMNVSRV N L  TAK
Sbjct:  177 RASDPMSRETKILYQIPCEEGELIRISWGSFKAAGVAWARDFCFLQHAAASTDPATGERLFCVVSGSIERPEVPDMEKLCKRIRSTVKTSGLVFREPKDGGPMRATYVVNVNPNGWIPSKIVNIICTNQAMNVSRVKNKLHETAK 321
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BLAST of mRNA_H-elongata_contig112759.1043.1 vs. uniprot
Match: L8H5Y9_ACACA (START domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H5Y9_ACACA)

HSP 1 Score: 55.5 bits (132), Expect = 3.270e-6
Identity = 37/122 (30.33%), Postives = 63/122 (51.64%), Query Frame = 1 
Query:   70 VRIVWGSFRAAGVAWARDFCFLQHCCTTTDPDTGERLFAVVAGSIERSEVPDMEALCKRIRSKIKNSGYVFR----EAVDGTIRA--SYVVNVNPGGWIPSKIVNIICTNQAMNVSRVANSL 417
            VR+    F A     +RDF  +       +  T + LF  V  SIER ++P  E     +R  +K+SG+V +    + V G  R   +Y+V +NP GWIP+ +VN +  +Q + ++ + N++
Sbjct:  137 VRVCNYKFSAPWPVASRDFVIIAG-----EKITDDGLFVTVVNSIERDDIPVEEGF---VRGMLKSSGFVIKPLDNDPVTGKPRCEITYLVQLNPMGWIPTIVVNTVNVSQPLCINTLKNAI 250
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BLAST of mRNA_H-elongata_contig112759.1043.1 vs. uniprot
Match: A0A7S4DQV3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DQV3_9EUKA)

HSP 1 Score: 52.0 bits (123), Expect = 5.240e-5
Identity = 33/103 (32.04%), Postives = 50/103 (48.54%), Query Frame = 1 
Query:  100 AGVAWARDFCFLQHCCTTTDPDTGERLFAVVAGSIERSEVP-DMEALCKRIRSKIKNSGYVFREAVDGTIRASYVVNVNPGGWIPSKIVNIICTNQAMNVSRV 405
            AGV  ARDF F +   T  D        A +       + P D       IR  I  SGY+ +     T   +Y+V V+P GW+P+ +V ++  +QA+NV+R+
Sbjct:  116 AGVT-ARDFTFHELIVTLNDNSV-----AAICWEEPWKDYPMDTSYFPSYIRGSIIMSGYLAKPLTPNTCEVTYLVQVDPKGWLPAWVVEVVAPDQALNVTRL 212
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BLAST of mRNA_H-elongata_contig112759.1043.1 vs. uniprot
Match: A0A7S4MT69_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MT69_9EUKA)

HSP 1 Score: 50.8 bits (120), Expect = 7.540e-5
Identity = 25/74 (33.78%), Postives = 42/74 (56.76%), Query Frame = 1 
Query:  199 SIERSEVPDMEALCKRIRSKIKNSGYVFREAVDGTIRASYVVNVNPGGWIPSKIVNIICTNQAMNVSRVANSLA 420
            S+   + PD +     +R  +  SGY  +   DGT  A+YVV ++P GWIP+ IVN++   Q + ++++   LA
Sbjct:  132 SVVDDDAPDAKGF---VRGDVFASGYWLKPNGDGTSTAAYVVQIDPKGWIPTAIVNVVAKKQPLVLAKMREYLA 202
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112759.1043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JFK6_9PHAE5.980e-6975.86START domain-containing protein n=2 Tax=Ectocarpus... [more]
L8H5Y9_ACACA3.270e-630.33START domain containing protein n=1 Tax=Acanthamoe... [more]
A0A7S4DQV3_9EUKA5.240e-532.04Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A7S4MT69_9EUKA7.540e-533.78Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112759contigH-elongata_contig112759:35..2000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSTART domain
Ec32 orthologEc-14_001960.1
Exons4
Model size432
Cds size417
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112759.1043.1prot_H-elongata_contig112759.1043.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112759 50..2000 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929649.2263167-UTR-H-elongata_contig112759:34..491622929649.2263167-UTR-H-elongata_contig112759:34..49Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112759 35..49 +
1691679104.961655-UTR-H-elongata_contig112759:34..491691679104.961655-UTR-H-elongata_contig112759:34..49Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112759 35..49 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929649.2419477-CDS-H-elongata_contig112759:49..1401622929649.2419477-CDS-H-elongata_contig112759:49..140Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112759 50..140 +
1691679104.9696145-CDS-H-elongata_contig112759:49..1401691679104.9696145-CDS-H-elongata_contig112759:49..140Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112759 50..140 +
1622929649.2529922-CDS-H-elongata_contig112759:680..8451622929649.2529922-CDS-H-elongata_contig112759:680..845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112759 681..845 +
1691679104.9815924-CDS-H-elongata_contig112759:680..8451691679104.9815924-CDS-H-elongata_contig112759:680..845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112759 681..845 +
1622929649.2650135-CDS-H-elongata_contig112759:1517..15901622929649.2650135-CDS-H-elongata_contig112759:1517..1590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112759 1518..1590 +
1691679104.9935868-CDS-H-elongata_contig112759:1517..15901691679104.9935868-CDS-H-elongata_contig112759:1517..1590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112759 1518..1590 +
1622929649.2828076-CDS-H-elongata_contig112759:1912..20001622929649.2828076-CDS-H-elongata_contig112759:1912..2000Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112759 1913..2000 +
1691679105.0139773-CDS-H-elongata_contig112759:1912..20001691679105.0139773-CDS-H-elongata_contig112759:1912..2000Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112759 1913..2000 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112759.1043.1

>prot_H-elongata_contig112759.1043.1 ID=prot_H-elongata_contig112759.1043.1|Name=mRNA_H-elongata_contig112759.1043.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
MSRETKILYQLRCGDDEFVRIVWGSFRAAGVAWARDFCFLQHCCTTTDPD
TGERLFAVVAGSIERSEVPDMEALCKRIRSKIKNSGYVFREAVDGTIRAS
YVVNVNPGGWIPSKIVNIICTNQAMNVSRVANSLANTAK
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mRNA from alignment at H-elongata_contig112759:35..2000+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112759.1043.1 ID=mRNA_H-elongata_contig112759.1043.1|Name=mRNA_H-elongata_contig112759.1043.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1966bp|location=Sequence derived from alignment at H-elongata_contig112759:35..2000+ (Himanthalia elongata Himel1 dioecious)
CGCGGCGCAGACCCCATGAGCCGGGAGACCAAGATCTTGTACCAGCTACG
GTGCGGTGATGACGAGTTCGTCAGAATTGTCTGGGGATCCTTCCGGGCTG
CGGGAGGTAATGACGAGACGGTTCTAAAAGAAAGAAGAACGAAGCATATG
TTTTGCTGGTTGTGCTAGTTGTACTTTGAATCAACGGATGCAATGAGAGC
AGGATTATTAATAGTTTGCGCGTAATTCGCTTCGGTTGGGAGAGGCGCGA
CAGCCGCGCAGCTGTGAAAAGAGGAGGGGGGAGACAAACGTAAGCACGCG
TGTTTGTATTCGTATGCGTCGTCCCCGACCGGGGTCTTGTAAGTTCATTC
TCGCGGTGTATATTACCTTATCTCGACCCTTCTCAGAAAAGCGGCGCCAC
CGATGGTAAAACTTTAAATCATTATCGCCCCCTCCTCACTCCCGCCTCCT
TACATTGTCCAATCCTTGCAACAATATCAAGTACGATATACTGTATGTTT
GTCGCCCTTGAAATCCATCGCCGCCGACCCCCGTTACTTATCCTCTGCTT
TTATTACCGATTTACTGATGTGAACCCCTTGTTCCCCACCTGAATGAAAT
GGCGGAAACACGATGCTCGGATGACGGGAAATGGCGCGAAAAAAAGTGGC
GTGGGCCCGAGACTTCTGCTTCCTGCAGCACTGCTGCACGACCACCGATC
CTGACACCGGCGAGCGGCTCTTCGCCGTTGTGGCCGGCAGCATTGAGAGG
TCCGAGGTTCCTGACATGGAGGCGCTATGCAAGCGCATTCGCTCGAAGAT
CAAGAACTCAGGTGAAATACGAAGTACATATGTTGTATATCCGCACTATA
TGGCTGCTGCCGTTGCTGCTGCTAGTGGTGAACGCAGGTGTGGCTTCCTT
TGAGACAAAACGTACCCTCGTAAGGCGTTTTTTTGGTTCGGGGATGAATA
CATATATACATATATTGTACATAATAGAAAGGGTAAAGAGGGTTCTTGCC
TCTCGGAGCCGCGCGACTCTCGTGTACTCTACGGTGCGTGTTGATTAAAC
GAAGTTTTGCCGATTTGTGGTTGATTGCTTGGTGACTCGGTTAAGAGTGA
TTGTTTTTTTAATCGATTACGGGGTATATTATCGATTACGGCAGATAGAA
GGGGCGGGGGGGAGGGGGGAGGCTCAAGGTTTGCATGCTTTAGCTGGTAG
ACCATTGGTGTATTGATGTATTGACCGCTTGTCCTCGGGAGAGAGGGAGG
ACGGAAATAGGCGGGGGAGGTTGTCGAGGAACTGGCGTGTTCCCGTCAGC
CTTTTGGCTTGTTGACAGCCTCGGGCGTTGATCGCTGCCCTTAAAGCGCT
CGCGACACAGGCGGTGAAAAAGAGCACACAGCCGTACCACTTCCTCGATG
TCCCCCACCCCCAATATTTTCATGATATAGATCTATAGATATGTGCGTGT
AAACATACGCGCGTGACAAATGGACGTCACCAGGGTACGTTTTCAGGGAG
GCCGTGGATGGGACGATACGCGCCAGCTATGTCGTCAACGTGAACCCCGG
CGGCTGGTGAGCGAACCACATACACCCGGCGCGTGTCGCAGAAATTGTAA
GCACTAGCTAAGAGTGTACGTACGTAAATAACTAGGCAGGATTGTGTTAT
GGTCATCATGATTTAACACTTTCATCGGGAGCCCGTGTTTTCGGCTGGAT
CTCTCCTTGCGCTCGAGACCGTTTGGGGTTGTCTCTCTTAGATCGACTTT
GCGCGCGTCCGCATAATGCTCGAGCACATTTGATGGGCGAGACATTTAAT
CTAAGTTCCACCATGATATCAAACTCCACGTGTCCATTATTTTGCCGCCA
CCACCGCTGCTGCTGTTGATGTCGCTAGGATCCCGAGCAAGATCGTCAAT
ATTATCTGTACTAACCAAGCGATGAACGTGTCCCGAGTGGCGAACAGCCT
AGCCAATACGGCGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig112759:35..2000+

>mRNA_H-elongata_contig112759.1043.1 ID=mRNA_H-elongata_contig112759.1043.1|Name=mRNA_H-elongata_contig112759.1043.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig112759:35..2000+ (Himanthalia elongata Himel1 dioecious)
ATGAGCCGGGAGACCAAGATCTTGTACCAGCTACGGTGCGGTGATGACGA
GTTCGTCAGAATTGTCTGGGGATCCTTCCGGGCTGCGGGAGATGAGCCGG
GAGACCAAGATCTTGTACCAGCTACGGTGCGGTGATGACGAGTTCGTCAG
AATTGTCTGGGGATCCTTCCGGGCTGCGGGAGTGGCGTGGGCCCGAGACT
TCTGCTTCCTGCAGCACTGCTGCACGACCACCGATCCTGACACCGGCGAG
CGGCTCTTCGCCGTTGTGGCCGGCAGCATTGAGAGGTCCGAGGTTCCTGA
CATGGAGGCGCTATGCAAGCGCATTCGCTCGAAGATCAAGAACTCAGTGG
CGTGGGCCCGAGACTTCTGCTTCCTGCAGCACTGCTGCACGACCACCGAT
CCTGACACCGGCGAGCGGCTCTTCGCCGTTGTGGCCGGCAGCATTGAGAG
GTCCGAGGTTCCTGACATGGAGGCGCTATGCAAGCGCATTCGCTCGAAGA
TCAAGAACTCAGGGTACGTTTTCAGGGAGGCCGTGGATGGGACGATACGC
GCCAGCTATGTCGTCAACGTGAACCCCGGCGGCTGGGTACGTTTTCAGGG
AGGCCGTGGATGGGACGATACGCGCCAGCTATGTCGTCAACGTGAACCCC
GGCGGCTGGATCCCGAGCAAGATCGTCAATATTATCTGTACTAACCAAGC
GATGAACGTGTCCCGAGTGGCGAACAGCCTAGCCAATACGGCGAAGGATC
CCGAGCAAGATCGTCAATATTATCTGTACTAACCAAGCGATGAACGTGTC
CCGAGTGGCGAACAGCCTAGCCAATACGGCGAAG
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