mRNA_H-elongata_contig112658.1034.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112658.1034.1
Unique NamemRNA_H-elongata_contig112658.1034.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112658.1034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112658contigH-elongata_contig112658:292..1265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size974
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112658.1034.1prot_H-elongata_contig112658.1034.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112658 524..904 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929648.2729104-UTR-H-elongata_contig112658:291..5231622929648.2729104-UTR-H-elongata_contig112658:291..523Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112658 292..523 +
1691679104.6079667-UTR-H-elongata_contig112658:291..5231691679104.6079667-UTR-H-elongata_contig112658:291..523Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112658 292..523 +
1622929648.3093836-UTR-H-elongata_contig112658:904..12651622929648.3093836-UTR-H-elongata_contig112658:904..1265Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112658 905..1265 +
1691679104.6258318-UTR-H-elongata_contig112658:904..12651691679104.6258318-UTR-H-elongata_contig112658:904..1265Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112658 905..1265 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929648.289124-CDS-H-elongata_contig112658:523..9041622929648.289124-CDS-H-elongata_contig112658:523..904Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112658 524..904 +
1691679104.6169314-CDS-H-elongata_contig112658:523..9041691679104.6169314-CDS-H-elongata_contig112658:523..904Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112658 524..904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112658.1034.1

>prot_H-elongata_contig112658.1034.1 ID=prot_H-elongata_contig112658.1034.1|Name=mRNA_H-elongata_contig112658.1034.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
MYCHPLSCLTSVQNICEQRSYHIRMNIRMNLGAHKNPTSRMAKSRSRLTD
QQRGVHGQTRLNASKSTSAGYDFNLASLRSRIMIAVTDEERKTPIRARSR
NLPMAVVSPRFITLLVVRHDDVTMMS*
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mRNA from alignment at H-elongata_contig112658:292..1265+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112658.1034.1 ID=mRNA_H-elongata_contig112658.1034.1|Name=mRNA_H-elongata_contig112658.1034.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=974bp|location=Sequence derived from alignment at H-elongata_contig112658:292..1265+ (Himanthalia elongata Himel1 dioecious)
GTTTCGTAAATATATGCCGTTAATCGACAAATTGTCGGACAACGAGGGCC
GTTACATCAACCCACGCAATGCCAGCCAGGTATGTTAGTTCGATGACGTC
GAGGGGAAGGAGTGCGGTCAAGATGCTTTGGCGCGGGAAACGAACTCCTT
TGTCATTCCCAAGTCACCTATTAAACGACGCGGATGATTTTCACCGCCTG
GGCCTACGGAATATATACCACCTTGCATATTTATGTATTGCCATCCACTG
TCCTGTTTAACGTCGGTGCAGAATATTTGTGAGCAGAGATCTTATCATAT
TCGCATGAACATTCGCATGAACCTGGGAGCTCACAAGAATCCCACATCCC
GCATGGCGAAATCACGGTCCAGGCTGACGGACCAACAACGAGGCGTGCAT
GGACAGACACGACTAAATGCCAGCAAGAGCACTAGCGCTGGATACGATTT
CAACCTGGCCAGCCTGAGGAGTAGGATCATGATAGCCGTAACCGACGAAG
AGCGAAAAACTCCTATTCGAGCACGTTCTAGGAATCTCCCTATGGCAGTT
GTGTCCCCGCGCTTCATTACTCTACTTGTAGTACGGCACGATGATGTCAC
GATGATGTCATGATGATGTCACGATGATGTAAGGGTAAGCGGGGGTGAAC
CTGTACATGGATATATTTTTGAGTTGAGGACGAGAGTGGCCTTTGTTTTG
TTTTATTGTGCATTATTTTACAAGAGATATATGCATTCACGACAAGATGG
GTAGTAGAATGCCTAACACACCGGCATCCATATAGGGACAATGATAATGT
CTCCGGAGAGGACATGCGAATAATGACGTTTTCAACATTTACTCGTAGAT
CAAGGGTTGACATGGATATGTTATCAGAAATATTGTTTTATGCGATTTGT
AAATCTTTGGGATAAATATCCGAAAACGATGCGATTTGTTGAGGGAGTTT
TGCAAAAACACATAATCAAACGAA
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Coding sequence (CDS) from alignment at H-elongata_contig112658:292..1265+

>mRNA_H-elongata_contig112658.1034.1 ID=mRNA_H-elongata_contig112658.1034.1|Name=mRNA_H-elongata_contig112658.1034.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig112658:292..1265+ (Himanthalia elongata Himel1 dioecious)
ATGTATTGCCATCCACTGTCCTGTTTAACGTCGGTGCAGAATATTTGTGA
GCAGAGATCTTATCATATTCGCATGAACATTCGCATGAACCTGGGAGCTC
ACAAGAATCCCACATCCCGCATGGCGAAATCACGGTCCAGGCTGACGGAC
CAACAACGAGGCGTGCATGGACAGACACGACTAAATGCCAGCAAGAGCAC
TAGCGCTGGATACGATTTCAACCTGGCCAGCCTGAGGAGTAGGATCATGA
TAGCCGTAACCGACGAAGAGCGAAAAACTCCTATTCGAGCACGTTCTAGG
AATCTCCCTATGGCAGTTGTGTCCCCGCGCTTCATTACTCTACTTGTAGT
ACGGCACGATGATGTCACGATGATGTCATGAATGTATTGCCATCCACTGT
CCTGTTTAACGTCGGTGCAGAATATTTGTGAGCAGAGATCTTATCATATT
CGCATGAACATTCGCATGAACCTGGGAGCTCACAAGAATCCCACATCCCG
CATGGCGAAATCACGGTCCAGGCTGACGGACCAACAACGAGGCGTGCATG
GACAGACACGACTAAATGCCAGCAAGAGCACTAGCGCTGGATACGATTTC
AACCTGGCCAGCCTGAGGAGTAGGATCATGATAGCCGTAACCGACGAAGA
GCGAAAAACTCCTATTCGAGCACGTTCTAGGAATCTCCCTATGGCAGTTG
TGTCCCCGCGCTTCATTACTCTACTTGTAGTACGGCACGATGATGTCACG
ATGATGTCATGA
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