mRNA_H-elongata_contig112607.1029.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112607.1029.1
Unique NamemRNA_H-elongata_contig112607.1029.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig112607.1029.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 9.390e-56
Identity = 98/134 (73.13%), Postives = 111/134 (82.84%), Query Frame = -3
Query:    1 LPDRDEQKNPLPFKMVSPDQLHPAVKVTRQEMRRALVSRFYGRVWDDGTLDPPFFCDTACLLTPPFNEGLHMTAMKLAAEDGDYLPASSTTTTPTLDEKVKAKLDGVWMEIKKRAVEAVKKQQADGSGDSGAAG 402
            LPDR +QK PLPFKMV P+QLH AV+ TR EMRRALVSRFYGRVWD+ TLDPPFFC  ACLLTPPF+EGLH+ AMKLAA D +YLP++ST T PT+DE+V AKLD  W EIK+RAVEAVKK+QA  S   GAAG
Sbjct:  532 LPDRGQQKKPLPFKMVPPEQLHAAVEKTRVEMRRALVSRFYGRVWDENTLDPPFFCHAACLLTPPFSEGLHVAAMKLAAGDDEYLPSTSTATAPTMDEEVTAKLDETWKEIKERAVEAVKKEQAAASSGPGAAG 665          
BLAST of mRNA_H-elongata_contig112607.1029.1 vs. uniprot
Match: A0A6H5JZ66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ66_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 3.270e-46
Identity = 81/134 (60.45%), Postives = 98/134 (73.13%), Query Frame = -3
Query:    1 LPDRDEQKNPLPFKMVSPDQLHPAVKVTRQEMRRALVSRFYGRVWDDGTLDPPFFCDTACLLTPPFNEGLHMTAMKLAAEDGDYLPASSTTTTPTLDEKVKAKLDGVWMEIKKRAVEAVKKQQADGSGDSGAAG 402
            LPDR+EQK PLP KMV+ D+LHP  +  R E+ RALVSRFYGRVWDD  LDP  FCD ACLLTPPF+EG +++AMKL AE+ +YL A ST   PT DE V+ KL+G+W+EI KRAV AVK      +G+ G  G
Sbjct:  279 LPDREEQKKPLPHKMVAHDELHPVAQKARNELCRALVSRFYGRVWDDSCLDPSMFCDAACLLTPPFSEGNYLSAMKLTAEEDEYLAAGSTVVAPTSDEDVREKLEGIWVEINKRAVTAVKTAHNRAAGEGGGQG 412          
BLAST of mRNA_H-elongata_contig112607.1029.1 vs. uniprot
Match: A0A6H5KEE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE6_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 4.070e-46
Identity = 85/136 (62.50%), Postives = 99/136 (72.79%), Query Frame = -3
Query:    1 LPDRDEQKNPLPFKMVSPDQLHPAVKVTRQEMRRALVSRFYGRVWDDGTLDPPFFCDTACLLTPPFNEGLHMTAMKLAAEDGDYLPASSTTTTPTLDEKVKAKLDGVWMEIKKRAVEAVKKQQ--ADGSGDSGAAG 402
            LPDR+EQK  LP KMV PD LHP  K  R ++ RALVSR YGRVWD  TLDP FFCD +CLLTPPF+EG H++AMKL AE+  YLPA S    PT  E+VK KLDGVW +IK+ AV+AVK  Q  A+GSG  G+ G
Sbjct:  248 LPDREEQKKALPHKMVEPDDLHPVAKKARSKLGRALVSRLYGRVWDHNTLDPSFFCDASCLLTPPFSEGHHLSAMKLTAEEHAYLPAGSVVVAPTSYEEVKEKLDGVWTKIKQGAVKAVKTAQSEAEGSGGDGSGG 383          
BLAST of mRNA_H-elongata_contig112607.1029.1 vs. uniprot
Match: A0A6H5K0P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P1_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 1.660e-45
Identity = 82/134 (61.19%), Postives = 98/134 (73.13%), Query Frame = -3
Query:    1 LPDRDEQKNPLPFKMVSPDQLHPAVKVTRQEMRRALVSRFYGRVWDDGTLDPPFFCDTACLLTPPFNEGLHMTAMKLAAEDGDYLPASSTTTTPTLDEKVKAKLDGVWMEIKKRAVEAVKKQQADGSGDSGAAG 402
            LPDR+EQK PLP KMV+ D+LHP  +  R E+ RALVSRFYGRVWDD  LDP  FCD ACLLTPPF+EG + +AMKL AE+ +YL A ST   PT DE V+ KL+G+W EIKKRA+ AVK  Q   +G+ G  G
Sbjct:  408 LPDREEQKKPLPHKMVAHDELHPVAQKARNELCRALVSRFYGRVWDDSCLDPSMFCDAACLLTPPFSEGNYPSAMKLTAEEDEYLAAGSTVVAPTSDEDVREKLEGIWAEIKKRAITAVKTAQNRAAGEGGGQG 541          
BLAST of mRNA_H-elongata_contig112607.1029.1 vs. uniprot
Match: A0A6H5JWE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWE7_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 1.790e-44
Identity = 79/124 (63.71%), Postives = 91/124 (73.39%), Query Frame = -3
Query:   31 LPDRDEQKNPLPFKMVSPDQLHPAVKVTRQEMRRALVSRFYGRVWDDGTLDPPFFCDTACLLTPPFNEGLHMTAMKLAAEDGDYLPASSTTTTPTLDEKVKAKLDGVWMEIKKRAVEAVKKQQA 402
            LPDR +QK  LP KMV+ D LHP     R E+ RALV+RFYGRVWD  TLDP   CD  CLLTPPF+EG +++AMKL AE+ +YLPA S  T PTLDE+VK KLDG W EIKKRAV AVK  Q+
Sbjct:  158 LPDRKDQKKALPHKMVAHDDLHPVAHKARNELCRALVTRFYGRVWDTSTLDPSVLCDAPCLLTPPFSEGNYVSAMKLTAEECEYLPAGSCVTAPTLDEEVKEKLDGAWTEIKKRAVAAVKTAQS 281          
BLAST of mRNA_H-elongata_contig112607.1029.1 vs. uniprot
Match: A0A6H5KBZ2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ2_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 3.880e-43
Identity = 74/120 (61.67%), Postives = 88/120 (73.33%), Query Frame = -3
Query:    1 MVSPDQLHPAVKVTRQEMRRALVSRFYGRVWDDGTLDPPFFCDTACLLTPPFNEGLHMTAMKLAAEDGDYLPASSTTTTPTLDEKVKAKLDGVWMEIKKRAVEAVKKQQADGSGDSGAAG 360
            MV+ D LHP  +  RQE+ RALV+RFYGRVWD+ TLDP  F D ACLLTPPF+EG +++AMKL  E+GDYLPA S+   PT DE V+ KLDG W EI+KRAV AVKK Q   +GDS   G
Sbjct:    1 MVAHDDLHPVAQKARQELCRALVTRFYGRVWDESTLDPSIFADVACLLTPPFSEGNYLSAMKLTVEEGDYLPAGSSVIAPTSDEDVREKLDGAWAEIQKRAVTAVKKAQRQAAGDSDGGG 120          
BLAST of mRNA_H-elongata_contig112607.1029.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 1.990e-42
Identity = 80/134 (59.70%), Postives = 96/134 (71.64%), Query Frame = -3
Query:    1 LPDRDEQKNPLPFKMVSPDQLHPAVKVTRQEMRRALVSRFYGRVWDDGTLDPPFFCDTACLLTPPFNEGLHMTAMKLAAEDGDYLPASSTTTTPTLDEKVKAKLDGVWMEIKKRAVEAVKKQQADGSGDSGAAG 402
            LPDR EQK PL  KMV+ D+LHP  +  R ++ RALVSRFYG VWDD  LDP  FCD ACLLTPPF+EG +++AMKL AE+ D L A ST   PT DE V+ KL+G+W EIKKRAV AVK +Q   +G+ G  G
Sbjct:  288 LPDRKEQKKPLRHKMVAHDELHPVAQKARDKLCRALVSRFYGHVWDDSCLDPSMFCDAACLLTPPFSEGNYLSAMKLTAEEDDNLAAVSTVVAPTSDEDVREKLEGIWAEIKKRAVTAVKTEQNRVAGEGGGQG 421          
BLAST of mRNA_H-elongata_contig112607.1029.1 vs. uniprot
Match: A0A6H5JGB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGB7_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 3.740e-40
Identity = 74/124 (59.68%), Postives = 89/124 (71.77%), Query Frame = -3
Query:   19 DEQKNPLPFKMVSPDQLHPAVKVTRQEMRRALVSRFYGRVWDDGTLDPPFFCDTACLLTPPFNEGLHMTAMKLAAEDGDYLPASSTTTTPTLDEKVKAKLDGVWMEIKKRAVEAVKKQQADGSG 390
            +EQK  LP KMV+ D LHP  +  R ++ RALV+RFYGRVWD  TLDP   CD ACLLTPPF+EG +++AMKL AE  +YLP  S  T PT DE+V+ KLDG W EIKKRAV AVK  Q+  +G
Sbjct:  197 EEQKKALPQKMVAHDDLHPVAQKARNKLCRALVTRFYGRVWDTSTLDPSVLCDAACLLTPPFSEGNYLSAMKLTAEGCEYLPTGSCVTAPTPDEEVQKKLDGAWAEIKKRAVAAVKTAQSRAAG 320          
BLAST of mRNA_H-elongata_contig112607.1029.1 vs. uniprot
Match: A0A6H5K8W6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W6_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 5.760e-40
Identity = 79/134 (58.96%), Postives = 97/134 (72.39%), Query Frame = -3
Query:    1 LPDRDEQKNPLPFKMVSPDQLHPAVKVTRQEMRRALVSRFYGRVWDDGTLDPPFFCDTACLLTPPFNEGLHMTAMKLAAEDGDYLPASSTTTTPTLDEKVKAKLDGVWMEIKKRAVEAVKKQQADGSGDSGAAG 402
            LP+R EQK  LP KMVS DQLHP   + R+E+ RAL+SR Y RVW++ + +P FFCD ACLLTPPF+EG H++AM+L AED  YLP SS    PT D +V AKLD  W EI+KRAVE+VK +Q D +G S A G
Sbjct:  210 LPNRGEQKKALPSKMVSADQLHPTTTLAREELCRALMSRLYERVWNEQSPNPSFFCDAACLLTPPFSEGRHVSAMRLTAEDAMYLPNSSNIIAPTADFEVTAKLDWAWTEIRKRAVESVKTEQ-DRAGGSDAGG 342          
BLAST of mRNA_H-elongata_contig112607.1029.1 vs. uniprot
Match: A0A6H5JTT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT2_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 3.940e-37
Identity = 67/108 (62.04%), Postives = 79/108 (73.15%), Query Frame = -3
Query:   79 LPDRDEQKNPLPFKMVSPDQLHPAVKVTRQEMRRALVSRFYGRVWDDGTLDPPFFCDTACLLTPPFNEGLHMTAMKLAAEDGDYLPASSTTTTPTLDEKVKAKLDGVW 402
            LPDR EQK  LP  MV+ D L P  +  R E+ RAL +RFYGRVWD  TLDP   CD ACLLTPPF+EG +++AMKL AE+G+YLPA S  T PTLDE+V+ KLDG W
Sbjct:  244 LPDRKEQKKALPHHMVAHDYLDPVAQKERNELCRALGTRFYGRVWDTSTLDPSVLCDAACLLTPPFSEGNYLSAMKLTAEEGEYLPAGSCVTAPTLDEEVQEKLDGAW 351          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112607.1029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5JJJ9_9PHAE9.390e-5673.13Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ66_9PHAE3.270e-4660.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEE6_9PHAE4.070e-4662.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0P1_9PHAE1.660e-4561.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWE7_9PHAE1.790e-4463.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBZ2_9PHAE3.880e-4361.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JB08_9PHAE1.990e-4259.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGB7_9PHAE3.740e-4059.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8W6_9PHAE5.760e-4058.96Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JTT2_9PHAE3.940e-3762.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112607contigH-elongata_contig112607:602..1336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size595
Cds size354
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112607.1029.1prot_H-elongata_contig112607.1029.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112607 983..1336 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929647.7839162-UTR-H-elongata_contig112607:601..7921622929647.7839162-UTR-H-elongata_contig112607:601..792Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112607 602..792 -
1691679104.478404-UTR-H-elongata_contig112607:601..7921691679104.478404-UTR-H-elongata_contig112607:601..792Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112607 602..792 -
1622929647.8158984-UTR-H-elongata_contig112607:934..9821622929647.8158984-UTR-H-elongata_contig112607:934..982Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112607 935..982 -
1691679104.4897904-UTR-H-elongata_contig112607:934..9821691679104.4897904-UTR-H-elongata_contig112607:934..982Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112607 935..982 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929647.8359988-CDS-H-elongata_contig112607:982..13361622929647.8359988-CDS-H-elongata_contig112607:982..1336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112607 983..1336 -
1691679104.5021951-CDS-H-elongata_contig112607:982..13361691679104.5021951-CDS-H-elongata_contig112607:982..1336Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112607 983..1336 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112607.1029.1

>prot_H-elongata_contig112607.1029.1 ID=prot_H-elongata_contig112607.1029.1|Name=mRNA_H-elongata_contig112607.1029.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
ACCTAITAAIGLLLLDSFNGALLDFHPNPVQLCLHFLIQRGGGCGGGGGQ
VVSILRCQLHRRHVKSFIERRREKTCSIAEEGGIQGAIVPHTPVEPRHER
ATHFLARHFNRGVQLVW*
back to top

mRNA from alignment at H-elongata_contig112607:602..1336-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112607.1029.1 ID=mRNA_H-elongata_contig112607.1029.1|Name=mRNA_H-elongata_contig112607.1029.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=735bp|location=Sequence derived from alignment at H-elongata_contig112607:602..1336- (Himanthalia elongata Himel1 dioecious)
GCCTGCTGCACCGCTATCACCGCTGCCATCGGCCTGCTGCTTCTTGACAG CTTCAACGGCGCGCTTCTTGATTTCCATCCAAACCCCGTCCAGCTTTGCC TTCACTTTCTCATCCAGCGTGGGGGTGGTTGTGGTGGAGGAGGCGGGCAA GTAGTCTCCATCCTCCGCTGCCAGCTTCATCGCCGTCATGTGAAGTCCTT CATTGAACGGCGGCGTGAGAAGACATGCAGTATCGCAGAAGAAGGGGGGA TCCAAGGTGCCATCGTCCCACACACGCCCGTAGAACCTCGACACGAGCGC GCGACGCATTTCCTGGCGCGTCACTTTAACCGCGGGGTGCAATTGGTCTG GTGACACCATCTTGAAGGGGAGTGGGTTTTTCTGTTCGTCGCGGTCAGGG AGGCCGTCGTCTCCGATGGCCGGGACTTCGAAGACCTTGAGGTCCTTCGA CGGGTCCAGCATCTCGATGTTGAGCTTGCCGAACTTCATGAAGATATCCG CCATCATCGGCGCGCCGCCGTATTGGCCATCACGCGTGATGGAGGAAAGC GGCTGCAGCAGCGAGTAGAGATGAAGGATGGCGTTCTTGTTGTCGCCCTC TTCGAGAGGAAAGTTGTTGCACTCATCGCTGTAAAGCTTCCTCAAGACGT GCCACAAGCGGATGATTCGCTCCAGTGTGCGAGTGAGGCTGAGCCATCGT TGAGGTGCGTGCTCGACGATCTTGAAGACCTCGCC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig112607:602..1336-

>mRNA_H-elongata_contig112607.1029.1 ID=mRNA_H-elongata_contig112607.1029.1|Name=mRNA_H-elongata_contig112607.1029.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig112607:602..1336- (Himanthalia elongata Himel1 dioecious)
GCCTGCTGCACCGCTATCACCGCTGCCATCGGCCTGCTGCTTCTTGACAG
CTTCAACGGCGCGCTTCTTGATTTCCATCCAAACCCCGTCCAGCTTTGCC
TTCACTTTCTCATCCAGCGTGGGGGTGGTTGTGGTGGAGGAGGCGGGCAA
GTAGTCTCCATCCTCCGCTGCCAGCTTCATCGCCGTCATGTGAAGTCCTT
CATTGAACGGCGGCGTGAGAAGACATGCAGTATCGCAGAAGAAGGGGGGA
TCCAAGGTGCCATCGTCCCACACACGCCCGTAGAACCTCGACACGAGCGC
GCGACGCATTTCCTGGCGCGTCACTTTAACCGCGGGGTGCAATTGGTCTG
GTGAGCCTGCTGCACCGCTATCACCGCTGCCATCGGCCTGCTGCTTCTTG
ACAGCTTCAACGGCGCGCTTCTTGATTTCCATCCAAACCCCGTCCAGCTT
TGCCTTCACTTTCTCATCCAGCGTGGGGGTGGTTGTGGTGGAGGAGGCGG
GCAAGTAGTCTCCATCCTCCGCTGCCAGCTTCATCGCCGTCATGTGAAGT
CCTTCATTGAACGGCGGCGTGAGAAGACATGCAGTATCGCAGAAGAAGGG
GGGATCCAAGGTGCCATCGTCCCACACACGCCCGTAGAACCTCGACACGA
GCGCGCGACGCATTTCCTGGCGCGTCACTTTAACCGCGGGGTGCAATTGG
TCTGGTGA
back to top