mRNA_H-elongata_contig112596.1026.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112596.1026.1
Unique NamemRNA_H-elongata_contig112596.1026.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig112596.1026.1 vs. uniprot
Match: D8LGF1_ECTSI (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF1_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 4.930e-20
Identity = 42/49 (85.71%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    1 LFSFQMAMRANSLTTENKRRTLQRNDIAMAVSKTDTYDFLIDIVPRDEV 147
            +F  +MAMRANSLT ENKRRTLQRNDIAMAVSKTDTYDFLIDIVPR+E+
Sbjct:   92 IFVLEMAMRANSLTAENKRRTLQRNDIAMAVSKTDTYDFLIDIVPREEL 140
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BLAST of mRNA_H-elongata_contig112596.1026.1 vs. uniprot
Match: A0A6H5KYW5_9PHAE (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYW5_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 4.890e-19
Identity = 42/49 (85.71%), Postives = 46/49 (93.88%), Query Frame = 1 
Query:    1 LFSFQMAMRANSLTTENKRRTLQRNDIAMAVSKTDTYDFLIDIVPRDEV 147
            +F  +MAMRANSLT ENKRRTLQRNDIAMAVSKTDTYDFLIDIVPR+E+
Sbjct:   92 IFILEMAMRANSLTAENKRRTLQRNDIAMAVSKTDTYDFLIDIVPREEL 140
[Close]
BLAST of mRNA_H-elongata_contig112596.1026.1 vs. uniprot
Match: A0A397EC51_9STRA (Histone domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EC51_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.050e-14
Identity = 32/49 (65.31%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 LFSFQMAMRANSLTTENKRRTLQRNDIAMAVSKTDTYDFLIDIVPRDEV 147
            +F  ++++RA   T ENKRRTLQRNDIAMA++KTDT+DFLIDIVPR+++
Sbjct:   16 MFILELSLRAWIHTEENKRRTLQRNDIAMAITKTDTFDFLIDIVPREDI 64
[Close]
BLAST of mRNA_H-elongata_contig112596.1026.1 vs. uniprot
Match: A0A397CEM9_9STRA (Histone domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CEM9_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.230e-14
Identity = 32/49 (65.31%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 LFSFQMAMRANSLTTENKRRTLQRNDIAMAVSKTDTYDFLIDIVPRDEV 147
            +F  ++++RA   T ENKRRTLQRNDIAMA++KTDT+DFLIDIVPR+++
Sbjct:   16 MFILELSLRAWIHTEENKRRTLQRNDIAMAITKTDTFDFLIDIVPREDI 64
[Close]
BLAST of mRNA_H-elongata_contig112596.1026.1 vs. uniprot
Match: A0A3R7HMG3_9STRA (CBFD_NFYB_HMF domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HMG3_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.730e-14
Identity = 32/49 (65.31%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 LFSFQMAMRANSLTTENKRRTLQRNDIAMAVSKTDTYDFLIDIVPRDEV 147
            +F  ++++RA   T ENKRRTLQRNDIAMA++KTD +DFLIDIVPRD++
Sbjct:   24 MFILELSLRAWIHTEENKRRTLQRNDIAMAITKTDVFDFLIDIVPRDDI 72
[Close]
BLAST of mRNA_H-elongata_contig112596.1026.1 vs. uniprot
Match: A0A397DGS3_9STRA (Histone domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DGS3_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.760e-14
Identity = 32/49 (65.31%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 LFSFQMAMRANSLTTENKRRTLQRNDIAMAVSKTDTYDFLIDIVPRDEV 147
            +F  ++++RA   T ENKRRTLQRNDIAMA++KTDT+DFLIDIVPR+++
Sbjct:   16 MFILELSLRAWIHTEENKRRTLQRNDIAMAITKTDTFDFLIDIVPREDI 64
[Close]
BLAST of mRNA_H-elongata_contig112596.1026.1 vs. uniprot
Match: A0A3F2RPL4_9STRA (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RPL4_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 9.760e-14
Identity = 32/49 (65.31%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 LFSFQMAMRANSLTTENKRRTLQRNDIAMAVSKTDTYDFLIDIVPRDEV 147
            +F  ++++RA   T ENKRRTLQRNDIAMA++KTD +DFLIDIVPRD++
Sbjct:   92 MFILELSLRAWIHTEENKRRTLQRNDIAMAITKTDVFDFLIDIVPRDDI 140
[Close]
BLAST of mRNA_H-elongata_contig112596.1026.1 vs. uniprot
Match: A0A662XQJ6_9STRA (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XQJ6_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.130e-13
Identity = 32/49 (65.31%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 LFSFQMAMRANSLTTENKRRTLQRNDIAMAVSKTDTYDFLIDIVPRDEV 147
            +F  ++++RA   T ENKRRTLQRNDIAMA++KTD +DFLIDIVPRD++
Sbjct:   90 MFILELSLRAWIHTEENKRRTLQRNDIAMAITKTDVFDFLIDIVPRDDI 138
[Close]
BLAST of mRNA_H-elongata_contig112596.1026.1 vs. uniprot
Match: A0A7S2CAV2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CAV2_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.600e-13
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 LFSFQMAMRANSLTTENKRRTLQRNDIAMAVSKTDTYDFLIDIVPRDEV 147
            +F+ ++ M A + T ENKRRTLQRNDI MAVSK DTYDFLIDIVPRD V
Sbjct:  100 IFALELTMLAWNHTEENKRRTLQRNDIVMAVSKNDTYDFLIDIVPRDNV 148
[Close]
BLAST of mRNA_H-elongata_contig112596.1026.1 vs. uniprot
Match: A0A0P1ARG4_PLAHL (Nuclear transcription factor y subunit c-1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ARG4_PLAHL)

HSP 1 Score: 69.7 bits (169), Expect = 1.860e-13
Identity = 32/49 (65.31%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    1 LFSFQMAMRANSLTTENKRRTLQRNDIAMAVSKTDTYDFLIDIVPRDEV 147
            +F  ++++RA   T ENKRRTLQRNDIAMA++KTD +DFLIDIVPRD++
Sbjct:   24 MFILELSLRAWIHTEENKRRTLQRNDIAMAITKTDVFDFLIDIVPRDDI 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112596.1026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGF1_ECTSI4.930e-2085.71CBFD_NFYB_HMF domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KYW5_9PHAE4.890e-1985.71CBFD_NFYB_HMF domain-containing protein n=1 Tax=Ec... [more]
A0A397EC51_9STRA1.050e-1465.31Histone domain-containing protein n=1 Tax=Aphanomy... [more]
A0A397CEM9_9STRA1.230e-1465.31Histone domain-containing protein n=2 Tax=Aphanomy... [more]
A0A3R7HMG3_9STRA3.730e-1465.31CBFD_NFYB_HMF domain-containing protein n=2 Tax=Ph... [more]
A0A397DGS3_9STRA4.760e-1465.31Histone domain-containing protein n=1 Tax=Aphanomy... [more]
A0A3F2RPL4_9STRA9.760e-1465.31CBFD_NFYB_HMF domain-containing protein n=1 Tax=Ph... [more]
A0A662XQJ6_9STRA1.130e-1365.31CBFD_NFYB_HMF domain-containing protein n=1 Tax=No... [more]
A0A7S2CAV2_9STRA1.600e-1371.43Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A0P1ARG4_PLAHL1.860e-1365.31Nuclear transcription factor y subunit c-1 n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112596contigH-elongata_contig112596:617..763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue4.4e-14
Seed eggNOG ortholog2880.D8LGF1
KEGG koko:K08066
KEGG Pathwayko04612,ko05152,map04612,map05152
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG5208@1,KOG1657@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size132
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929647.6636558-UTR-H-elongata_contig112596:616..6311622929647.6636558-UTR-H-elongata_contig112596:616..631Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112596 617..631 +
1691679104.429972-UTR-H-elongata_contig112596:616..6311691679104.429972-UTR-H-elongata_contig112596:616..631Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112596 617..631 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929647.6822999-CDS-H-elongata_contig112596:631..7631622929647.6822999-CDS-H-elongata_contig112596:631..763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112596 632..763 +
1691679104.4421506-CDS-H-elongata_contig112596:631..7631691679104.4421506-CDS-H-elongata_contig112596:631..763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112596 632..763 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112596.1026.1prot_H-elongata_contig112596.1026.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112596 632..763 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112596.1026.1

>prot_H-elongata_contig112596.1026.1 ID=prot_H-elongata_contig112596.1026.1|Name=mRNA_H-elongata_contig112596.1026.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
MAMRANSLTTENKRRTLQRNDIAMAVSKTDTYDFLIDIVPRDEV
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mRNA from alignment at H-elongata_contig112596:617..763+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112596.1026.1 ID=mRNA_H-elongata_contig112596.1026.1|Name=mRNA_H-elongata_contig112596.1026.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig112596:617..763+ (Himanthalia elongata Himel1 dioecious)
TTGTTTTCATTCCAGATGGCGATGCGTGCTAACTCGCTTACGACAGAGAA
CAAGCGGCGGACGCTGCAGCGCAACGACATCGCAATGGCCGTCTCCAAAA
CGGACACGTATGACTTCCTGATCGACATCGTGCCGCGGGACGAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig112596:617..763+

>mRNA_H-elongata_contig112596.1026.1 ID=mRNA_H-elongata_contig112596.1026.1|Name=mRNA_H-elongata_contig112596.1026.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig112596:617..763+ (Himanthalia elongata Himel1 dioecious)
ATGGCGATGCGTGCTAACTCGCTTACGACAGAGAACAAGCGGCGGACGCT
GCAGCGCAACGACATCGCAATGGCCGTCTCCAAAACGGACACGTATGACT
TCCTGATCGACATCGTGCCGCGGGACGAGGTGATGGCGATGCGTGCTAAC
TCGCTTACGACAGAGAACAAGCGGCGGACGCTGCAGCGCAACGACATCGC
AATGGCCGTCTCCAAAACGGACACGTATGACTTCCTGATCGACATCGTGC
CGCGGGACGAGGTG
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