mRNA_H-elongata_contig112507.1020.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112507.1020.1
Unique NamemRNA_H-elongata_contig112507.1020.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig112507.1020.1 vs. uniprot
Match: D8LTM7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM7_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 3.900e-45
Identity = 77/105 (73.33%), Postives = 88/105 (83.81%), Query Frame = 1
Query:   13 LGPIVSVLGLLAILHAGYSAAHFQQFKKPTEA-----GDSASLDAVVEAIVGFFICVVGVLSSAERFLPIKGAAGGGKTLDSAESTREFHVFEHRGKSLRRRLAN 312
            LG +VS  GLL +LHAGYSAAHFQQFKKP+ A     GDSA LDA +EA+VGFF+CV GVL SA+  LPIKGAAGGGK+LDSAESTREF VFEHRG+SLRRR+A+
Sbjct:    4 LGTVVSAAGLLILLHAGYSAAHFQQFKKPSSALGGGGGDSAPLDAALEALVGFFVCVFGVLYSADALLPIKGAAGGGKSLDSAESTREFEVFEHRGRSLRRRVAS 108          
BLAST of mRNA_H-elongata_contig112507.1020.1 vs. uniprot
Match: A0A836CBS2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBS2_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.280e-26
Identity = 56/102 (54.90%), Postives = 70/102 (68.63%), Query Frame = 1
Query:   13 LGPIVSVLGLLAILHAGYSAAHFQQFKKPTE-----AGDSASLDAVVEAIVGFFICVVGVLSSAERFLPIKGAAGGGKTLDSAESTREFHVFEHRGKSLRRR 303
            LG IV+ LGLL +LHAGYSAAH++QF    E     A D+  LDAVVE IVGF +CV GV+S+A + LP++G AGGG++ D+ E    F VF HR   LRRR
Sbjct:    4 LGTIVAGLGLLVLLHAGYSAAHYRQFIVAAEGEAAPAEDAPPLDAVVETIVGFLLCVAGVVSAAGQMLPVRGPAGGGRSADAHEGLPGFAVFSHRAVQLRRR 105          
BLAST of mRNA_H-elongata_contig112507.1020.1 vs. uniprot
Match: H3H2C3_PHYRM (Uncharacterized protein n=17 Tax=Phytophthora TaxID=4783 RepID=H3H2C3_PHYRM)

HSP 1 Score: 68.2 bits (165), Expect = 1.110e-12
Identity = 37/102 (36.27%), Postives = 62/102 (60.78%), Query Frame = 1
Query:   16 GPIVSVLGLLAILHAGYSAAHFQQFKKPTEAGDSAS--LDAVVEAIVGFFICVVGVLSSAERFLPIKGA-AGGGKTLDSAESTREFHVFEHRGKSLRRRLAN 312
            G ++  +G L ++HAGY +  ++ + K TE  D+     + VVE +V F I +VGVL ++   LPI+   A   ++L +  S+ +FHVF HRGK+L +R+ +
Sbjct:    5 GKLLIAVGALLLVHAGYYSVQYESYVKLTETADAQMPPFEVVVELVVSFLISLVGVLLTSGELLPIRSNDAMHSRSLATVISSPDFHVFNHRGKALHKRVIS 106          
BLAST of mRNA_H-elongata_contig112507.1020.1 vs. uniprot
Match: A0A3M6VHM6_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHM6_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.250e-11
Identity = 36/103 (34.95%), Postives = 62/103 (60.19%), Query Frame = 1
Query:   13 LGPIVSVLGLLAILHAGYSAAHFQQFKKPTEAGDSAS--LDAVVEAIVGFFICVVGVLSSAERFLPIKGA-AGGGKTLDSAESTREFHVFEHRGKSLRRRLAN 312
            +G ++  +G L ++HA Y +  ++ + K TE  D+     + VVE +V F I +VGVL ++   LPI+   A   ++L +  S+ +FHVF HRGK+L +R+ +
Sbjct:    4 IGKLLIAMGTLLLVHASYYSVQYETYAKSTETLDAPMPPFEVVVELVVSFLISLVGVLLTSGEMLPIRSNDALHSRSLATVISSPDFHVFNHRGKTLHKRVIS 106          
BLAST of mRNA_H-elongata_contig112507.1020.1 vs. uniprot
Match: A0A5D6XQS2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQS2_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 5.020e-11
Identity = 36/101 (35.64%), Postives = 59/101 (58.42%), Query Frame = 1
Query:   16 GPIVSVLGLLAILHAGYSAAHFQQFKKPTEAGDSA--SLDAVVEAIVGFFICVVGVLSSAERFLPIKGAAG-GGKTLDSAESTREFHVFEHRGKSLRRRLA 309
            G +   +G L +LHAGY +  + ++ K  E  D+     + V+E ++ F I + GVL +A   LPI+      G++L +  S+ +FHVF HRGK+L +R+A
Sbjct:    5 GKLFIAIGSLLLLHAGYYSVKYAEYVKLAEVTDAKLPPTEVVLELVLAFAISLAGVLVTAGELLPIRSNKRLHGRSLATVISSPDFHVFNHRGKALHKRIA 105          
BLAST of mRNA_H-elongata_contig112507.1020.1 vs. uniprot
Match: A0A7S0GCH7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GCH7_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 7.620e-11
Identity = 32/92 (34.78%), Postives = 51/92 (55.43%), Query Frame = 1
Query:   22 IVSVLGLLAILHAGYSAAHFQQFKKPTEAGDSASLDAVVEAIVGFFICVVGVLSSAERFLPIKGAAGGGKTLDSAEST-REFHVFEHRGKSL 294
            I+++ G++ ILH+ YS  H++     TE   S  +D V+E + GFF+C++G+  S   F+ IK  A     L S     R+F ++  RGK L
Sbjct:    9 IMTIFGVIFILHSAYSCLHYRSLFDATETPKSPPMDVVIEVLTGFFMCLIGIFGSVGPFVEIKTTAANKVVLVSPPHRGRDFDIYSTRGKVL 100          
BLAST of mRNA_H-elongata_contig112507.1020.1 vs. uniprot
Match: M4C506_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C506_HYAAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.390e-9
Identity = 35/96 (36.46%), Postives = 57/96 (59.38%), Query Frame = 1
Query:   16 GPIVSVLGLLAILHAGYSAAHFQQFKKPTEAGDSA--SLDAVVEAIVGFFICVVGVLSSAERFLPIKGA-AGGGKTLDSAESTREFHVFEHRGKSL 294
            G ++  LG L ++HAGY +  ++ + K TE  D+    ++ ++E  V F + +VGVL ++   +PI+   A   ++L +  S  EFHVF HRGKSL
Sbjct:    5 GKLLIALGALLLVHAGYYSVQYENYAKLTETLDARLPPVEVLIELAVAFGLSLVGVLLTSGEMVPIRSNDALHYRSLATVVSCPEFHVFNHRGKSL 100          
BLAST of mRNA_H-elongata_contig112507.1020.1 vs. uniprot
Match: A0A2D4BHJ5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BHJ5_PYTIN)

HSP 1 Score: 60.1 bits (144), Expect = 1.560e-9
Identity = 34/101 (33.66%), Postives = 58/101 (57.43%), Query Frame = 1
Query:   16 GPIVSVLGLLAILHAGYSAAHFQQFKKPTEAGDSA--SLDAVVEAIVGFFICVVGVLSSAERFLPIKGA-AGGGKTLDSAESTREFHVFEHRGKSLRRRLA 309
            G ++  +G+L +LHAGY +  ++++ +  E  D+       +VE ++ F + +VGVL  A     I+   A   ++L S  S  +FHVF HRGK+L +R+A
Sbjct:    4 GKLLITVGVLLLLHAGYYSVQYEEYVRVLEISDAQLPPFAVIVELVLSFVLSLVGVLLVAGDLQHIRSNDALHSRSLPSVTSVPDFHVFNHRGKALHKRIA 104          
BLAST of mRNA_H-elongata_contig112507.1020.1 vs. uniprot
Match: A7RYN2_NEMVE (Membrane magnesium transporter n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7RYN2_NEMVE)

HSP 1 Score: 57.0 bits (136), Expect = 2.700e-8
Identity = 36/96 (37.50%), Postives = 53/96 (55.21%), Query Frame = 1
Query:   13 LGPIVSVLGLLAILHAGYSAAHFQQFKKPTEAGD-SASLDAVVEAIVGFFICVVGVLSSAERFLPIKGAAG-GGKTLDSAESTREFHVFEHRGKSL 294
            LG ++   G+LAILHAGYSA   + + K  E    S  LD  ++ ++G  +  VGV+  A  F  IK AA    KT +S  +   F+ F HRG+++
Sbjct:    4 LGRVLVFFGVLAILHAGYSAVQCRTYYKLLEEEFVSLPLDIYIQCVLGMLLGCVGVVLVAGEFKEIKAAAEMASKTWESLGNRPSFYTFNHRGRAM 99          
BLAST of mRNA_H-elongata_contig112507.1020.1 vs. uniprot
Match: UPI000A2A52AD (membrane magnesium transporter 1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A52AD)

HSP 1 Score: 55.5 bits (132), Expect = 1.070e-7
Identity = 36/96 (37.50%), Postives = 52/96 (54.17%), Query Frame = 1
Query:   13 LGPIVSVLGLLAILHAGYSAAHFQQFKKPTEAG-DSASLDAVVEAIVGFFICVVGVLSSAERFLPIKGAAG-GGKTLDSAESTREFHVFEHRGKSL 294
            LG I+  +GL+AILHAGYSA   + + K  E    S  +D  ++ ++G     VGV+  A  F  I+ AA    K+ +S  +   F+ F HRGK L
Sbjct:    4 LGRILVFIGLVAILHAGYSAVQCRTYYKLLEEEFTSLPVDIFIQCLLGMLFGCVGVVLVAGEFKEIRAAAEMASKSWESLGNRPSFYTFNHRGKKL 99          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112507.1020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D8LTM7_ECTSI3.900e-4573.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBS2_9STRA2.280e-2654.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
H3H2C3_PHYRM1.110e-1236.27Uncharacterized protein n=17 Tax=Phytophthora TaxI... [more]
A0A3M6VHM6_9STRA1.250e-1134.95Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A5D6XQS2_9STRA5.020e-1135.64Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S0GCH7_9STRA7.620e-1134.78Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
M4C506_HYAAE1.390e-936.46Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A2D4BHJ5_PYTIN1.560e-933.66Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A7RYN2_NEMVE2.700e-837.50Membrane magnesium transporter n=1 Tax=Nematostell... [more]
UPI000A2A52AD1.070e-737.50membrane magnesium transporter 1 n=1 Tax=Exaiptasi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112507contigH-elongata_contig112507:912..1229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue2.2e-11
Seed eggNOG ortholog115417.EPrPW00000016196
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005783,GO:0005789,GO:0005794,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008324,GO:0012505,GO:0015075,GO:0015318,GO:0016020,GO:0016021,GO:0022857,GO:0022890,GO:0030176,GO:0031224,GO:0031227,GO:0031410,GO:0031982,GO:0031984,GO:0032991,GO:0034220,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0072546,GO:0097708,GO:0098655,GO:0098796,GO:0098827
EggNOG free text desc.11 kDa salivary protein. Source PGD
EggNOG OGs1MHPA@121069,2S1Q8@2759,KOG3918@1
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionMagnesium transporter
Ec32 orthologEc-28_003510.1
Exons1
Model size318
Cds size318
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929647.1300843-CDS-H-elongata_contig112507:911..12291622929647.1300843-CDS-H-elongata_contig112507:911..1229Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112507 912..1229 -
1691679104.2960722-CDS-H-elongata_contig112507:911..12291691679104.2960722-CDS-H-elongata_contig112507:911..1229Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112507 912..1229 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112507.1020.1prot_H-elongata_contig112507.1020.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112507 912..1229 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112507.1020.1

>prot_H-elongata_contig112507.1020.1 ID=prot_H-elongata_contig112507.1020.1|Name=mRNA_H-elongata_contig112507.1020.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MRGSLGPIVSVLGLLAILHAGYSAAHFQQFKKPTEAGDSASLDAVVEAIV
GFFICVVGVLSSAERFLPIKGAAGGGKTLDSAESTREFHVFEHRGKSLRR
RLANK*
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mRNA from alignment at H-elongata_contig112507:912..1229-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112507.1020.1 ID=mRNA_H-elongata_contig112507.1020.1|Name=mRNA_H-elongata_contig112507.1020.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=318bp|location=Sequence derived from alignment at H-elongata_contig112507:912..1229- (Himanthalia elongata Himel1 dioecious)
ATGAGGGGAAGCCTGGGGCCGATCGTGTCCGTATTGGGCCTCCTCGCGAT CTTACACGCCGGTTACTCGGCGGCGCATTTCCAGCAGTTCAAGAAGCCCA CGGAGGCGGGCGACTCGGCCTCTCTGGACGCTGTCGTGGAGGCCATCGTT GGTTTTTTTATCTGCGTCGTGGGGGTGTTGTCTAGCGCTGAGCGGTTCCT TCCGATCAAGGGCGCCGCGGGAGGAGGGAAAACTCTGGATTCGGCCGAGT CGACTCGAGAGTTTCACGTCTTTGAGCACCGGGGGAAGTCGCTGCGGAGG CGTTTGGCAAACAAATGA
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Coding sequence (CDS) from alignment at H-elongata_contig112507:912..1229-

>mRNA_H-elongata_contig112507.1020.1 ID=mRNA_H-elongata_contig112507.1020.1|Name=mRNA_H-elongata_contig112507.1020.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig112507:912..1229- (Himanthalia elongata Himel1 dioecious)
ATGAGGGGAAGCCTGGGGCCGATCGTGTCCGTATTGGGCCTCCTCGCGAT
CTTACACGCCGGTTACTCGGCGGCGCATTTCCAGCAGTTCAAGAAGCCCA
CGGAGGCGGGCGACTCGGCCTCTCTGGACGCTGTCGTGGAGGCCATCGTT
GGTTTTTTTATCTGCGTCGTGGGGGTGTTGTCTAGCGCTGAGCGGTTCCT
TCCGATCAAGGGCGCCGCGGGAGGAGGGAAAACTCTGGATTCGGCCGAGT
CGACTCGAGAGTTTCACGTCTTTGAGCACCGGGGGAAGTCGCTGCGGAGG
CGTTTGGCAAACAAATGAATGAGGGGAAGCCTGGGGCCGATCGTGTCCGT
ATTGGGCCTCCTCGCGATCTTACACGCCGGTTACTCGGCGGCGCATTTCC
AGCAGTTCAAGAAGCCCACGGAGGCGGGCGACTCGGCCTCTCTGGACGCT
GTCGTGGAGGCCATCGTTGGTTTTTTTATCTGCGTCGTGGGGGTGTTGTC
TAGCGCTGAGCGGTTCCTTCCGATCAAGGGCGCCGCGGGAGGAGGGAAAA
CTCTGGATTCGGCCGAGTCGACTCGAGAGTTTCACGTCTTTGAGCACCGG
GGGAAGTCGCTGCGGAGGCGTTTGGCAAACAAATGA
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