mRNA_H-elongata_contig112502.1019.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112502.1019.1
Unique NamemRNA_H-elongata_contig112502.1019.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112502.1019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112502contigH-elongata_contig112502:1053..1555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size503
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112502.1019.1prot_H-elongata_contig112502.1019.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112502 1133..1480 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929646.9668436-UTR-H-elongata_contig112502:1052..11321622929646.9668436-UTR-H-elongata_contig112502:1052..1132Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112502 1053..1132 +
1691679104.2509873-UTR-H-elongata_contig112502:1052..11321691679104.2509873-UTR-H-elongata_contig112502:1052..1132Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112502 1053..1132 +
1622929647.0255404-UTR-H-elongata_contig112502:1480..15551622929647.0255404-UTR-H-elongata_contig112502:1480..1555Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112502 1481..1555 +
1691679104.2723403-UTR-H-elongata_contig112502:1480..15551691679104.2723403-UTR-H-elongata_contig112502:1480..1555Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112502 1481..1555 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929646.9811137-CDS-H-elongata_contig112502:1132..14801622929646.9811137-CDS-H-elongata_contig112502:1132..1480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112502 1133..1480 +
1691679104.264704-CDS-H-elongata_contig112502:1132..14801691679104.264704-CDS-H-elongata_contig112502:1132..1480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112502 1133..1480 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112502.1019.1

>prot_H-elongata_contig112502.1019.1 ID=prot_H-elongata_contig112502.1019.1|Name=mRNA_H-elongata_contig112502.1019.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
MTCNGQRAISLGSHGASSYPPPRFDIFGLPSPPDPNPLTLNTQAAHKMET
PFSPCTIRQTIHSSLRLPDPAVASRVCLFPCQKRARTPLQPSRPRKPPTL
SSYPHTTASPKGTPP*
back to top

mRNA from alignment at H-elongata_contig112502:1053..1555+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112502.1019.1 ID=mRNA_H-elongata_contig112502.1019.1|Name=mRNA_H-elongata_contig112502.1019.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=503bp|location=Sequence derived from alignment at H-elongata_contig112502:1053..1555+ (Himanthalia elongata Himel1 dioecious)
GCCAGGAAATCGGAGCTACACGGAAGAGAGGATTGCGTCCAAACCCCCAC
GACCCCACGGAAGGACGAAGATGCGCCAAGATGACCTGTAACGGTCAGCG
AGCTATCTCGCTTGGGTCTCACGGCGCGAGTTCCTACCCGCCACCCCGCT
TCGATATTTTTGGATTACCCTCACCTCCCGACCCCAACCCCTTAACCCTT
AACACTCAGGCAGCCCACAAGATGGAAACCCCGTTTTCTCCTTGCACTAT
ACGACAGACAATTCACTCCTCCCTGCGCCTGCCCGATCCAGCCGTTGCCA
GCAGGGTCTGCCTCTTCCCTTGTCAAAAGAGAGCGCGAACACCTTTACAG
CCTTCCCGACCTCGCAAACCTCCCACGCTTTCCTCCTACCCCCACACAAC
CGCCTCCCCGAAAGGAACTCCTCCGTAAAACCCCCGCTGTCTCTTCCTCT
CGTGCCGCTCGCTTGCGTCTTCTTCGGAACGTCGAAATAACTTCACTTCA
GTA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig112502:1053..1555+

>mRNA_H-elongata_contig112502.1019.1 ID=mRNA_H-elongata_contig112502.1019.1|Name=mRNA_H-elongata_contig112502.1019.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig112502:1053..1555+ (Himanthalia elongata Himel1 dioecious)
ATGACCTGTAACGGTCAGCGAGCTATCTCGCTTGGGTCTCACGGCGCGAG
TTCCTACCCGCCACCCCGCTTCGATATTTTTGGATTACCCTCACCTCCCG
ACCCCAACCCCTTAACCCTTAACACTCAGGCAGCCCACAAGATGGAAACC
CCGTTTTCTCCTTGCACTATACGACAGACAATTCACTCCTCCCTGCGCCT
GCCCGATCCAGCCGTTGCCAGCAGGGTCTGCCTCTTCCCTTGTCAAAAGA
GAGCGCGAACACCTTTACAGCCTTCCCGACCTCGCAAACCTCCCACGCTT
TCCTCCTACCCCCACACAACCGCCTCCCCGAAAGGAACTCCTCCGTAAAT
GACCTGTAACGGTCAGCGAGCTATCTCGCTTGGGTCTCACGGCGCGAGTT
CCTACCCGCCACCCCGCTTCGATATTTTTGGATTACCCTCACCTCCCGAC
CCCAACCCCTTAACCCTTAACACTCAGGCAGCCCACAAGATGGAAACCCC
GTTTTCTCCTTGCACTATACGACAGACAATTCACTCCTCCCTGCGCCTGC
CCGATCCAGCCGTTGCCAGCAGGGTCTGCCTCTTCCCTTGTCAAAAGAGA
GCGCGAACACCTTTACAGCCTTCCCGACCTCGCAAACCTCCCACGCTTTC
CTCCTACCCCCACACAACCGCCTCCCCGAAAGGAACTCCTCCGTAA
back to top