mRNA_H-elongata_contig112500.1017.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig112500.1017.1 vs. uniprot
Match: D7G1U2_ECTSI (Glycine cleavage system H protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1U2_ECTSI) HSP 1 Score: 117 bits (293), Expect = 8.190e-32 Identity = 54/70 (77.14%), Postives = 62/70 (88.57%), Query Frame = 1
Query: 4 DSFGSVESVKAASDVYAPAKGEVVEVNEALSETPGILNEDPEGTGWFMKIKINGEAPDTLMNPDAYKEHC 213
DSFGSVESVKAASDVY+PA GEV+EVNEAL+E+PGILNEDP G GWF+KIK+ APDTLM+P AY+ HC
Sbjct: 97 DSFGSVESVKAASDVYSPASGEVLEVNEALTESPGILNEDPMGKGWFIKIKMTEPAPDTLMDPAAYETHC 166
BLAST of mRNA_H-elongata_contig112500.1017.1 vs. uniprot
Match: A0A7R9Z823_9STRA (Glycine cleavage system H protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z823_9STRA) HSP 1 Score: 101 bits (252), Expect = 9.840e-26 Identity = 48/74 (64.86%), Postives = 56/74 (75.68%), Query Frame = 1
Query: 4 DSFGSVESVKAASDVYAPAKGEVVEVNEALSETPGILNEDPEGTGWFMKIKINGEAP-DTLMNPDAYKEHCAKE 222
DSFGSVESVKAASDVYAP GE+VEVNE L++ PG++N EG WF+KIK+ E+ D LM D YKEHC KE
Sbjct: 84 DSFGSVESVKAASDVYAPVSGEIVEVNETLTDEPGLVNTAAEGDAWFIKIKVTDESELDDLMTSDMYKEHCEKE 157
BLAST of mRNA_H-elongata_contig112500.1017.1 vs. uniprot
Match: A0A1Z5K173_FISSO (Glycine cleavage system H protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K173_FISSO) HSP 1 Score: 97.8 bits (242), Expect = 3.040e-24 Identity = 47/74 (63.51%), Postives = 57/74 (77.03%), Query Frame = 1
Query: 4 DSFGSVESVKAASDVYAPAKGEVVEVNEALSETPGILNEDPEGTGWFMKIKINGEAP-DTLMNPDAYKEHCAKE 222
+SFGSVESVKAASDVYAP G VVEVNE LS+ PG++N + EG WF+KI++ EA +LMN DAYK HC +E
Sbjct: 82 ESFGSVESVKAASDVYAPVSGTVVEVNEILSDEPGMVNSEAEGKAWFVKIEMKDEAELKSLMNADAYKTHCEEE 155
BLAST of mRNA_H-elongata_contig112500.1017.1 vs. uniprot
Match: B7FST3_PHATC (Glycine cleavage system H protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FST3_PHATC) HSP 1 Score: 97.8 bits (242), Expect = 3.040e-24 Identity = 47/75 (62.67%), Postives = 58/75 (77.33%), Query Frame = 1
Query: 4 DSFGSVESVKAASDVYAPAKGEVVEVNEALSETPGILNEDPEGTGWFMKIKI--NGEAPDTLMNPDAYKEHCAKE 222
DSFGSVESVKAASDVYAP G VVE+N+ LS+ PG++N EG WF+KI++ +G+ D L+ PDAYKEHC KE
Sbjct: 82 DSFGSVESVKAASDVYAPISGTVVEINDKLSDDPGLVNTQAEGEAWFIKIEMAESGDVDD-LLGPDAYKEHCEKE 155
BLAST of mRNA_H-elongata_contig112500.1017.1 vs. uniprot
Match: B8C5A8_THAPS (Glycine cleavage system H protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5A8_THAPS) HSP 1 Score: 96.7 bits (239), Expect = 3.660e-24 Identity = 44/75 (58.67%), Postives = 59/75 (78.67%), Query Frame = 1
Query: 1 RDSFGSVESVKAASDVYAPAKGEVVEVNEALSETPGILNEDPEGTGWFMKIKINGEAP-DTLMNPDAYKEHCAKE 222
+DSFGSVESVKAASDVYAP G+V+EVNEAL++ PG++N + E WF+K+++ E ++LMN + YKEHC KE
Sbjct: 49 KDSFGSVESVKAASDVYAPVSGKVLEVNEALTDEPGMVNSNAEDDAWFIKLEMGDEGELESLMNAEQYKEHCEKE 123
BLAST of mRNA_H-elongata_contig112500.1017.1 vs. uniprot
Match: A0A7S2V4N2_9STRA (Glycine cleavage system H protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4N2_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 8.420e-24 Identity = 45/71 (63.38%), Postives = 56/71 (78.87%), Query Frame = 1
Query: 4 DSFGSVESVKAASDVYAPAKGEVVEVNEALSETPGILNEDPEGTGWFMKIKINGEAP-DTLMNPDAYKEHC 213
+SFGSVESVKAASDVY P GE+V NEALS+TPG +NE EG GWFMKIK++ + D LM+ +AY++HC
Sbjct: 83 ESFGSVESVKAASDVYTPVSGEIVAANEALSDTPGTVNESAEGDGWFMKIKLSDPSELDDLMDLEAYQKHC 153
BLAST of mRNA_H-elongata_contig112500.1017.1 vs. uniprot
Match: A0A7S0C7W5_9STRA (Glycine cleavage system H protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C7W5_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 9.590e-24 Identity = 49/75 (65.33%), Postives = 57/75 (76.00%), Query Frame = 1
Query: 4 DSFGSVESVKAASDVYAPAKGEVVEVNEALSETPGILNEDPEGTGWFMKIKI--NGEAPDTLMNPDAYKEHCAKE 222
+SFGSVESVKAASDVY P G VVE+NEALS+ PGI+N E WF+KI+I +GE + LM PDAYKEHC KE
Sbjct: 86 ESFGSVESVKAASDVYCPVGGTVVEINEALSDEPGIVNTKAESDAWFIKIEIEDDGELGE-LMEPDAYKEHCEKE 159
BLAST of mRNA_H-elongata_contig112500.1017.1 vs. uniprot
Match: A0A6P2B6J6_9CHLR (Glycine cleavage system H protein n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A6P2B6J6_9CHLR) HSP 1 Score: 94.4 bits (233), Expect = 3.150e-23 Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = 1
Query: 4 DSFGSVESVKAASDVYAPAKGEVVEVNEALSETPGILNEDPEGTGWFMKIKINGEAP-DTLMNPDAYKEHC 213
DSFGSVESVKAASDVYA GEVVE+NEAL + P I+N DP G GW +KIK++GEA LM+ +AYK +C
Sbjct: 54 DSFGSVESVKAASDVYAHVGGEVVEINEALEDEPEIINADPYGKGWMVKIKLSGEADLSDLMDAEAYKAYC 124
BLAST of mRNA_H-elongata_contig112500.1017.1 vs. uniprot
Match: A0A7S2YP38_9STRA (Glycine cleavage system H protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YP38_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 5.620e-23 Identity = 43/74 (58.11%), Postives = 57/74 (77.03%), Query Frame = 1
Query: 4 DSFGSVESVKAASDVYAPAKGEVVEVNEALSETPGILNEDPEGTGWFMKIKINGEAP-DTLMNPDAYKEHCAKE 222
DSFGSVESVKAASDVYAP G+V+E+NE L + PG++N++ E WF+K++I+ E +LMN + YKEHC KE
Sbjct: 101 DSFGSVESVKAASDVYAPVSGKVIEINEPLGDDPGMVNKEAESGAWFIKMEISDEGELSSLMNEEEYKEHCEKE 174
BLAST of mRNA_H-elongata_contig112500.1017.1 vs. uniprot
Match: A0A6U3XE37_9STRA (Glycine cleavage system H protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3XE37_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 5.740e-23 Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 1
Query: 4 DSFGSVESVKAASDVYAPAKGEVVEVNEALSETPGILNEDPEGTGWFMKIKINGEAP-DTLMNPDAYKEHCAKE 222
DSFGSVESVKAASDVYAP G VVE+NE LS+ PG++N EG GWF+KI+++ E D LM + YK HC E
Sbjct: 88 DSFGSVESVKAASDVYAPVSGTVVEINEVLSDEPGVVNTSAEGEGWFVKIEMSEEGELDDLMGEEDYKAHCEAE 161 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112500.1017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig112500.1017.1 >prot_H-elongata_contig112500.1017.1 ID=prot_H-elongata_contig112500.1017.1|Name=mRNA_H-elongata_contig112500.1017.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp RDSFGSVESVKAASDVYAPAKGEVVEVNEALSETPGILNEDPEGTGWFMKback to top mRNA from alignment at H-elongata_contig112500:820..1918- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig112500.1017.1 ID=mRNA_H-elongata_contig112500.1017.1|Name=mRNA_H-elongata_contig112500.1017.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1099bp|location=Sequence derived from alignment at H-elongata_contig112500:820..1918- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig112500:820..1918- >mRNA_H-elongata_contig112500.1017.1 ID=mRNA_H-elongata_contig112500.1017.1|Name=mRNA_H-elongata_contig112500.1017.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig112500:820..1918- (Himanthalia elongata Himel1 dioecious)back to top |