mRNA_H-elongata_contig112500.1017.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112500.1017.1
Unique NamemRNA_H-elongata_contig112500.1017.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig112500.1017.1 vs. uniprot
Match: D7G1U2_ECTSI (Glycine cleavage system H protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1U2_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 8.190e-32
Identity = 54/70 (77.14%), Postives = 62/70 (88.57%), Query Frame = 1
Query:    4 DSFGSVESVKAASDVYAPAKGEVVEVNEALSETPGILNEDPEGTGWFMKIKINGEAPDTLMNPDAYKEHC 213
            DSFGSVESVKAASDVY+PA GEV+EVNEAL+E+PGILNEDP G GWF+KIK+   APDTLM+P AY+ HC
Sbjct:   97 DSFGSVESVKAASDVYSPASGEVLEVNEALTESPGILNEDPMGKGWFIKIKMTEPAPDTLMDPAAYETHC 166          
BLAST of mRNA_H-elongata_contig112500.1017.1 vs. uniprot
Match: A0A7R9Z823_9STRA (Glycine cleavage system H protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z823_9STRA)

HSP 1 Score: 101 bits (252), Expect = 9.840e-26
Identity = 48/74 (64.86%), Postives = 56/74 (75.68%), Query Frame = 1
Query:    4 DSFGSVESVKAASDVYAPAKGEVVEVNEALSETPGILNEDPEGTGWFMKIKINGEAP-DTLMNPDAYKEHCAKE 222
            DSFGSVESVKAASDVYAP  GE+VEVNE L++ PG++N   EG  WF+KIK+  E+  D LM  D YKEHC KE
Sbjct:   84 DSFGSVESVKAASDVYAPVSGEIVEVNETLTDEPGLVNTAAEGDAWFIKIKVTDESELDDLMTSDMYKEHCEKE 157          
BLAST of mRNA_H-elongata_contig112500.1017.1 vs. uniprot
Match: A0A1Z5K173_FISSO (Glycine cleavage system H protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K173_FISSO)

HSP 1 Score: 97.8 bits (242), Expect = 3.040e-24
Identity = 47/74 (63.51%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    4 DSFGSVESVKAASDVYAPAKGEVVEVNEALSETPGILNEDPEGTGWFMKIKINGEAP-DTLMNPDAYKEHCAKE 222
            +SFGSVESVKAASDVYAP  G VVEVNE LS+ PG++N + EG  WF+KI++  EA   +LMN DAYK HC +E
Sbjct:   82 ESFGSVESVKAASDVYAPVSGTVVEVNEILSDEPGMVNSEAEGKAWFVKIEMKDEAELKSLMNADAYKTHCEEE 155          
BLAST of mRNA_H-elongata_contig112500.1017.1 vs. uniprot
Match: B7FST3_PHATC (Glycine cleavage system H protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FST3_PHATC)

HSP 1 Score: 97.8 bits (242), Expect = 3.040e-24
Identity = 47/75 (62.67%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    4 DSFGSVESVKAASDVYAPAKGEVVEVNEALSETPGILNEDPEGTGWFMKIKI--NGEAPDTLMNPDAYKEHCAKE 222
            DSFGSVESVKAASDVYAP  G VVE+N+ LS+ PG++N   EG  WF+KI++  +G+  D L+ PDAYKEHC KE
Sbjct:   82 DSFGSVESVKAASDVYAPISGTVVEINDKLSDDPGLVNTQAEGEAWFIKIEMAESGDVDD-LLGPDAYKEHCEKE 155          
BLAST of mRNA_H-elongata_contig112500.1017.1 vs. uniprot
Match: B8C5A8_THAPS (Glycine cleavage system H protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C5A8_THAPS)

HSP 1 Score: 96.7 bits (239), Expect = 3.660e-24
Identity = 44/75 (58.67%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    1 RDSFGSVESVKAASDVYAPAKGEVVEVNEALSETPGILNEDPEGTGWFMKIKINGEAP-DTLMNPDAYKEHCAKE 222
            +DSFGSVESVKAASDVYAP  G+V+EVNEAL++ PG++N + E   WF+K+++  E   ++LMN + YKEHC KE
Sbjct:   49 KDSFGSVESVKAASDVYAPVSGKVLEVNEALTDEPGMVNSNAEDDAWFIKLEMGDEGELESLMNAEQYKEHCEKE 123          
BLAST of mRNA_H-elongata_contig112500.1017.1 vs. uniprot
Match: A0A7S2V4N2_9STRA (Glycine cleavage system H protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4N2_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 8.420e-24
Identity = 45/71 (63.38%), Postives = 56/71 (78.87%), Query Frame = 1
Query:    4 DSFGSVESVKAASDVYAPAKGEVVEVNEALSETPGILNEDPEGTGWFMKIKINGEAP-DTLMNPDAYKEHC 213
            +SFGSVESVKAASDVY P  GE+V  NEALS+TPG +NE  EG GWFMKIK++  +  D LM+ +AY++HC
Sbjct:   83 ESFGSVESVKAASDVYTPVSGEIVAANEALSDTPGTVNESAEGDGWFMKIKLSDPSELDDLMDLEAYQKHC 153          
BLAST of mRNA_H-elongata_contig112500.1017.1 vs. uniprot
Match: A0A7S0C7W5_9STRA (Glycine cleavage system H protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C7W5_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 9.590e-24
Identity = 49/75 (65.33%), Postives = 57/75 (76.00%), Query Frame = 1
Query:    4 DSFGSVESVKAASDVYAPAKGEVVEVNEALSETPGILNEDPEGTGWFMKIKI--NGEAPDTLMNPDAYKEHCAKE 222
            +SFGSVESVKAASDVY P  G VVE+NEALS+ PGI+N   E   WF+KI+I  +GE  + LM PDAYKEHC KE
Sbjct:   86 ESFGSVESVKAASDVYCPVGGTVVEINEALSDEPGIVNTKAESDAWFIKIEIEDDGELGE-LMEPDAYKEHCEKE 159          
BLAST of mRNA_H-elongata_contig112500.1017.1 vs. uniprot
Match: A0A6P2B6J6_9CHLR (Glycine cleavage system H protein n=1 Tax=Anaerolineaceae bacterium TaxID=2024896 RepID=A0A6P2B6J6_9CHLR)

HSP 1 Score: 94.4 bits (233), Expect = 3.150e-23
Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    4 DSFGSVESVKAASDVYAPAKGEVVEVNEALSETPGILNEDPEGTGWFMKIKINGEAP-DTLMNPDAYKEHC 213
            DSFGSVESVKAASDVYA   GEVVE+NEAL + P I+N DP G GW +KIK++GEA    LM+ +AYK +C
Sbjct:   54 DSFGSVESVKAASDVYAHVGGEVVEINEALEDEPEIINADPYGKGWMVKIKLSGEADLSDLMDAEAYKAYC 124          
BLAST of mRNA_H-elongata_contig112500.1017.1 vs. uniprot
Match: A0A7S2YP38_9STRA (Glycine cleavage system H protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YP38_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 5.620e-23
Identity = 43/74 (58.11%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    4 DSFGSVESVKAASDVYAPAKGEVVEVNEALSETPGILNEDPEGTGWFMKIKINGEAP-DTLMNPDAYKEHCAKE 222
            DSFGSVESVKAASDVYAP  G+V+E+NE L + PG++N++ E   WF+K++I+ E    +LMN + YKEHC KE
Sbjct:  101 DSFGSVESVKAASDVYAPVSGKVIEINEPLGDDPGMVNKEAESGAWFIKMEISDEGELSSLMNEEEYKEHCEKE 174          
BLAST of mRNA_H-elongata_contig112500.1017.1 vs. uniprot
Match: A0A6U3XE37_9STRA (Glycine cleavage system H protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3XE37_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 5.740e-23
Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    4 DSFGSVESVKAASDVYAPAKGEVVEVNEALSETPGILNEDPEGTGWFMKIKINGEAP-DTLMNPDAYKEHCAKE 222
            DSFGSVESVKAASDVYAP  G VVE+NE LS+ PG++N   EG GWF+KI+++ E   D LM  + YK HC  E
Sbjct:   88 DSFGSVESVKAASDVYAPVSGTVVEINEVLSDEPGVVNTSAEGEGWFVKIEMSEEGELDDLMGEEDYKAHCEAE 161          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112500.1017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1U2_ECTSI8.190e-3277.14Glycine cleavage system H protein n=2 Tax=Ectocarp... [more]
A0A7R9Z823_9STRA9.840e-2664.86Glycine cleavage system H protein n=2 Tax=Pseudict... [more]
A0A1Z5K173_FISSO3.040e-2463.51Glycine cleavage system H protein n=2 Tax=Fistulif... [more]
B7FST3_PHATC3.040e-2462.67Glycine cleavage system H protein n=2 Tax=Phaeodac... [more]
B8C5A8_THAPS3.660e-2458.67Glycine cleavage system H protein n=1 Tax=Thalassi... [more]
A0A7S2V4N2_9STRA8.420e-2463.38Glycine cleavage system H protein n=1 Tax=Fibrocap... [more]
A0A7S0C7W5_9STRA9.590e-2465.33Glycine cleavage system H protein n=1 Tax=Probosci... [more]
A0A6P2B6J6_9CHLR3.150e-2364.79Glycine cleavage system H protein n=1 Tax=Anaeroli... [more]
A0A7S2YP38_9STRA5.620e-2358.11Glycine cleavage system H protein n=1 Tax=Amphipro... [more]
A0A6U3XE37_9STRA5.740e-2360.81Glycine cleavage system H protein n=1 Tax=Ditylum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112500contigH-elongata_contig112500:820..1918 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue9.5e-25
Seed eggNOG ortholog2880.D7G1U2
Preferred nameGCVH
KEGG rclassRC00022,RC02834
KEGG koko:K02437
KEGG ReactionR01221
KEGG Pathwayko00260,ko00630,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map01100,map01110,map01130,map01200
KEGG ModuleM00532
EggNOG free text desc.glycine decarboxylation via glycine cleavage system
EggNOG OGsCOG0509@1,KOG3373@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlycine cleavage system H protein
Ec32 orthologEc-07_004120.1
Exons2
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929646.8908398-CDS-H-elongata_contig112500:819..9601622929646.8908398-CDS-H-elongata_contig112500:819..960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112500 820..960 -
1691679104.2295933-CDS-H-elongata_contig112500:819..9601691679104.2295933-CDS-H-elongata_contig112500:819..960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112500 820..960 -
1622929646.9088838-CDS-H-elongata_contig112500:1831..19181622929646.9088838-CDS-H-elongata_contig112500:1831..1918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112500 1832..1918 -
1691679104.2415388-CDS-H-elongata_contig112500:1831..19181691679104.2415388-CDS-H-elongata_contig112500:1831..1918Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112500 1832..1918 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112500.1017.1prot_H-elongata_contig112500.1017.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112500 820..1918 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112500.1017.1

>prot_H-elongata_contig112500.1017.1 ID=prot_H-elongata_contig112500.1017.1|Name=mRNA_H-elongata_contig112500.1017.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
RDSFGSVESVKAASDVYAPAKGEVVEVNEALSETPGILNEDPEGTGWFMK
IKINGEAPDTLMNPDAYKEHCAKEG*
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mRNA from alignment at H-elongata_contig112500:820..1918-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112500.1017.1 ID=mRNA_H-elongata_contig112500.1017.1|Name=mRNA_H-elongata_contig112500.1017.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1099bp|location=Sequence derived from alignment at H-elongata_contig112500:820..1918- (Himanthalia elongata Himel1 dioecious)
AGGGACTCGTTTGGATCCGTGGAATCAGTGAAGGCTGCCAGCGATGTTTA TGCCCCAGCGAAGGGGGAAGTGGTTGAGGTTAATGAGGTCAGTCGAAAGT TAGTCGTCGACAGTTAGTACCGTGTACAGTAATAAGCTGACAAACCGTAC CACGGAGCCGAAATAGGTCTTAAATCATGGATGGCTCATCTACTACTACT ACTACTACTACTACTACTACTACTACTACTAATTACTATTATTATTATTA TCGTGTATCTACCCCCCTTCCATTTTTGTTTCGTTTTTTGTTTCCCTCCT CCTTGGTGTTCGGGGGAAATTCGATTTCCTGGAAAATTCCGATTTTTTCA TGAGAGCATATGCCGTGGACGGAGTCTGGAGGAGTTTCCTCTCTTTTAAT TTCCCCTTTTTTATATTTTTCCATTAGACCTTGCAAATCAGCATAGCACG TAACGAGGCGCCAAAATGGTTTGCGTATACCCCCCACCCCCCCCCTATGG GGAGCTAGCCTTGGAAGTAGATAAATATTTACCCTACATTCCCAGACAGA CAGACGTGATCACCTATGAACACGTAGAGTAAGAAGGAAAAATCGAGCTC CAACCGTCACTTTTTTTGGTGCTGCCCCCTTTTTCTTTGGGAACCTTTGA CTTTTGACCTTTCGTGGGGGATTTTCGTGATTTTTTAATGTTTATGTGCG TGTGTCTGTTTATTAAATATATACCGTATATATACCGTATATATACGGTA TATATATAATGACGTCGTAGTCCTGTCATGGGGGGTGGAGGGTTGATGAT GTCTTCGAGGCTTCGTGGGTGGGTGTGAGTTGTGTATGTATGTCCGGCGC TTGATGTATTATGTATGTTTCTCTCTCTCTGCCTCTAGAGCTATTAATCT CTCTCTTTCACTTGATATATGACCTATGTATGCCTCTGTTGGATGGAGGA TGCTCCAGGCGTTGTCTGAGACCCCGGGCATTCTAAACGAGGACCCCGAG GGCACGGGATGGTTCATGAAGATAAAGATCAACGGCGAAGCCCCGGACAC GCTGATGAACCCCGACGCCTACAAGGAGCACTGCGCTAAGGAGGGATAA
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Coding sequence (CDS) from alignment at H-elongata_contig112500:820..1918-

>mRNA_H-elongata_contig112500.1017.1 ID=mRNA_H-elongata_contig112500.1017.1|Name=mRNA_H-elongata_contig112500.1017.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig112500:820..1918- (Himanthalia elongata Himel1 dioecious)
AGGGACTCGTTTGGATCCGTGGAATCAGTGAAGGCTGCCAGCGATGTTTA
TGCCCCAGCGAAGGGGGAAGTGGTTGAGGTTAATGAGAGGGACTCGTTTG
GATCCGTGGAATCAGTGAAGGCTGCCAGCGATGTTTATGCCCCAGCGAAG
GGGGAAGTGGTTGAGGTTAATGAGGCGTTGTCTGAGACCCCGGGCATTCT
AAACGAGGACCCCGAGGGCACGGGATGGTTCATGAAGATAAAGATCAACG
GCGAAGCCCCGGACACGCTGATGAACCCCGACGCCTACAAGGAGCACTGC
GCTAAGGAGGGATAAGCGTTGTCTGAGACCCCGGGCATTCTAAACGAGGA
CCCCGAGGGCACGGGATGGTTCATGAAGATAAAGATCAACGGCGAAGCCC
CGGACACGCTGATGAACCCCGACGCCTACAAGGAGCACTGCGCTAAGGAG
GGATAA
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