mRNA_H-elongata_contig11243.1011.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11243.1011.1
Unique NamemRNA_H-elongata_contig11243.1011.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig11243.1011.1 vs. uniprot
Match: A0A6H5JFR3_9PHAE (1,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR3_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 6.680e-44
Identity = 78/91 (85.71%), Postives = 86/91 (94.51%), Query Frame = 3 
Query:    3 RMHYGHPDIFDKVFFMTSGGISKASSGINLSGDIFAG*NGTIRGGKVFFREYVQVGKGRDVGMQQIFKFEAKLSQSAAEQTLSRDVSCLGD 275
            RMHYGHPD+FDKVFFMT+GG+SKAS GINLS DIFAG NGTIRGG++FF+EYVQVGKGRDVGMQQI+KFEAKLSQ AAEQTLSRDV+ LGD
Sbjct: 1566 RMHYGHPDLFDKVFFMTAGGVSKASRGINLSEDIFAGYNGTIRGGQIFFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQTLSRDVNRLGD 1656
[Close]
BLAST of mRNA_H-elongata_contig11243.1011.1 vs. uniprot
Match: A0A835Z4B5_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4B5_9STRA)

HSP 1 Score: 146 bits (369), Expect = 6.510e-39
Identity = 73/90 (81.11%), Postives = 80/90 (88.89%), Query Frame = 3 
Query:    3 RMHYGHPDIFDKVFFMTSGGISKASSGINLSGDIFAG*NGTIRGGKVFFREYVQVGKGRDVGMQQIFKFEAKLSQSAAEQTLSRDVSCLG 272
            RMHYGHPD+FDKVFFMT GG+SKAS GINLS DIFAG N TIRGG+V F EY QVGKGRDVGMQQI+KFEAKL+Q AAEQ+LSRDV+ LG
Sbjct: 1276 RMHYGHPDLFDKVFFMTRGGMSKASKGINLSEDIFAGYNNTIRGGQVVFCEYAQVGKGRDVGMQQIYKFEAKLAQGAAEQSLSRDVNRLG 1365
[Close]
BLAST of mRNA_H-elongata_contig11243.1011.1 vs. uniprot
Match: A0A7S0GHQ8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GHQ8_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.760e-37
Identity = 67/86 (77.91%), Postives = 77/86 (89.53%), Query Frame = 3 
Query:    3 RMHYGHPDIFDKVFFMTSGGISKASSGINLSGDIFAG*NGTIRGGKVFFREYVQVGKGRDVGMQQIFKFEAKLSQSAAEQTLSRDV 260
            R+HYGHPD+FDK+FFMT GG+SKAS GINLS DIFAG +  IRGG+V F+EY+QVGKGRDVGM QI+KFEAKLSQ AAEQ+LSRDV
Sbjct:   68 RLHYGHPDVFDKLFFMTRGGVSKASKGINLSEDIFAGYSNVIRGGQVGFKEYLQVGKGRDVGMSQIYKFEAKLSQGAAEQSLSRDV 153
[Close]
BLAST of mRNA_H-elongata_contig11243.1011.1 vs. uniprot
Match: A0A7S1FM30_9STRA (1,3-beta-glucan synthase n=4 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FM30_9STRA)

HSP 1 Score: 142 bits (357), Expect = 2.710e-37
Identity = 68/90 (75.56%), Postives = 78/90 (86.67%), Query Frame = 3 
Query:    3 RMHYGHPDIFDKVFFMTSGGISKASSGINLSGDIFAG*NGTIRGGKVFFREYVQVGKGRDVGMQQIFKFEAKLSQSAAEQTLSRDVSCLG 272
            R+HYGHPD+FDK+FFMT GGISK+S GINLS DIFAG N  +RGG V FREY+QVGKGRDVGM QI+KFEAKLSQ AAEQ+LSRD+  +G
Sbjct: 1475 RLHYGHPDVFDKLFFMTRGGISKSSKGINLSEDIFAGYNNVVRGGAVGFREYIQVGKGRDVGMSQIYKFEAKLSQGAAEQSLSRDIYRIG 1564
[Close]
BLAST of mRNA_H-elongata_contig11243.1011.1 vs. uniprot
Match: A0A7S3LH45_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LH45_9STRA)

HSP 1 Score: 137 bits (346), Expect = 3.300e-37
Identity = 67/86 (77.91%), Postives = 75/86 (87.21%), Query Frame = 3 
Query:    3 RMHYGHPDIFDKVFFMTSGGISKASSGINLSGDIFAG*NGTIRGGKVFFREYVQVGKGRDVGMQQIFKFEAKLSQSAAEQTLSRDV 260
            R+HYGHPD+FDK+FF+T GGISKAS GINLS DIFAG N   RGG V F+EYVQ+GKGRDVGM QI+KFEAKLSQ AAEQ+LSRDV
Sbjct:   49 RLHYGHPDVFDKLFFITRGGISKASKGINLSEDIFAGYNNVNRGGTVGFKEYVQIGKGRDVGMSQIYKFEAKLSQGAAEQSLSRDV 134
[Close]
BLAST of mRNA_H-elongata_contig11243.1011.1 vs. uniprot
Match: W7U1M2_9STRA (1,3-beta-glucan synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1M2_9STRA)

HSP 1 Score: 140 bits (354), Expect = 6.900e-37
Identity = 68/86 (79.07%), Postives = 77/86 (89.53%), Query Frame = 3 
Query:    3 RMHYGHPDIFDKVFFMTSGGISKASSGINLSGDIFAG*NGTIRGGKVFFREYVQVGKGRDVGMQQIFKFEAKLSQSAAEQTLSRDV 260
            R+HYGHPD+FDK+FFM +GGISKAS GINLS DIFAG N  +RGG V F+EYVQVGKGRDVGMQQI+KFEAKLSQ AAEQ++SRDV
Sbjct: 1680 RLHYGHPDLFDKLFFMQNGGISKASKGINLSEDIFAGYNNLLRGGSVEFKEYVQVGKGRDVGMQQIYKFEAKLSQGAAEQSISRDV 1765
[Close]
BLAST of mRNA_H-elongata_contig11243.1011.1 vs. uniprot
Match: A0A7S2UV62_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV62_9STRA)

HSP 1 Score: 140 bits (353), Expect = 9.350e-37
Identity = 69/86 (80.23%), Postives = 76/86 (88.37%), Query Frame = 3 
Query:    3 RMHYGHPDIFDKVFFMTSGGISKASSGINLSGDIFAG*NGTIRGGKVFFREYVQVGKGRDVGMQQIFKFEAKLSQSAAEQTLSRDV 260
            R+HYGHPDIFDK+FFMT GGISKAS GINLS DIFAG N  +RGG V F+EYVQVGKGRDVGMQQI+KFEAKL+Q  AEQ+LSRDV
Sbjct: 1053 RLHYGHPDIFDKLFFMTRGGISKASKGINLSEDIFAGFNNQLRGGNVEFKEYVQVGKGRDVGMQQIYKFEAKLAQGNAEQSLSRDV 1138
[Close]
BLAST of mRNA_H-elongata_contig11243.1011.1 vs. uniprot
Match: B7FQP6_PHATC (1,3-beta-glucan synthase n=4 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQP6_PHATC)

HSP 1 Score: 140 bits (353), Expect = 9.390e-37
Identity = 68/86 (79.07%), Postives = 76/86 (88.37%), Query Frame = 3 
Query:    3 RMHYGHPDIFDKVFFMTSGGISKASSGINLSGDIFAG*NGTIRGGKVFFREYVQVGKGRDVGMQQIFKFEAKLSQSAAEQTLSRDV 260
            R+HYGHPDIFDK+FF+T GG+SKAS GINLS DIFAG N  IRGG V F+EYVQ+GKGRDVGM QI+KFEAKLSQ AAEQ+LSRDV
Sbjct: 1484 RLHYGHPDIFDKLFFITRGGVSKASRGINLSEDIFAGYNNVIRGGSVGFKEYVQIGKGRDVGMSQIYKFEAKLSQGAAEQSLSRDV 1569
[Close]
BLAST of mRNA_H-elongata_contig11243.1011.1 vs. uniprot
Match: A0A8J6C3D5_DIALT (1,3-beta-glucan synthase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C3D5_DIALT)

HSP 1 Score: 138 bits (348), Expect = 4.440e-36
Identity = 68/91 (74.73%), Postives = 77/91 (84.62%), Query Frame = 3 
Query:    3 RMHYGHPDIFDKVFFMTSGGISKASSGINLSGDIFAG*NGTIRGGKVFFREYVQVGKGRDVGMQQIFKFEAKLSQSAAEQTLSRDVSCLGD 275
            RMHYGHPD+FDK+F MT GG+SKAS GINLS DIFAG N T+RGG+V + EYVQVGKGRDVGM QI+KFEAKLSQ   EQ +SRDVS LG+
Sbjct: 1551 RMHYGHPDLFDKLFSMTRGGVSKASKGINLSEDIFAGFNHTLRGGRVAYAEYVQVGKGRDVGMHQIYKFEAKLSQGNGEQMISRDVSRLGE 1641
[Close]
BLAST of mRNA_H-elongata_contig11243.1011.1 vs. uniprot
Match: A0A7S1UZ62_9STRA (1,3-beta-glucan synthase n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UZ62_9STRA)

HSP 1 Score: 138 bits (348), Expect = 4.440e-36
Identity = 67/86 (77.91%), Postives = 76/86 (88.37%), Query Frame = 3 
Query:    3 RMHYGHPDIFDKVFFMTSGGISKASSGINLSGDIFAG*NGTIRGGKVFFREYVQVGKGRDVGMQQIFKFEAKLSQSAAEQTLSRDV 260
            R+HYGHPD+FDK+FF+T GGISK+S GINLS DIFAG N  IRGG V F+EY+QVGKGRDVGM QI+KFEAKLSQ AAEQ+LSRDV
Sbjct: 1497 RLHYGHPDVFDKLFFITRGGISKSSKGINLSEDIFAGYNNIIRGGSVGFKEYLQVGKGRDVGMSQIYKFEAKLSQGAAEQSLSRDV 1582
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11243.1011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFR3_9PHAE6.680e-4485.711,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CC... [more]
A0A835Z4B5_9STRA6.510e-3981.111,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A7S0GHQ8_9STRA1.760e-3777.91Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S1FM30_9STRA2.710e-3775.561,3-beta-glucan synthase n=4 Tax=Corethron hystrix... [more]
A0A7S3LH45_9STRA3.300e-3777.91Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
W7U1M2_9STRA6.900e-3779.071,3-beta-glucan synthase n=2 Tax=Monodopsidaceae T... [more]
A0A7S2UV62_9STRA9.350e-3780.23Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
B7FQP6_PHATC9.390e-3779.071,3-beta-glucan synthase n=4 Tax=Phaeodactylum tri... [more]
A0A8J6C3D5_DIALT4.440e-3674.731,3-beta-glucan synthase n=1 Tax=Diacronema luther... [more]
A0A7S1UZ62_9STRA4.440e-3677.911,3-beta-glucan synthase n=2 Tax=Grammatophora oce... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11243contigH-elongata_contig11243:7383..8055 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue9.4e-10
Seed eggNOG ortholog112098.XP_008612952.1
KEGG koko:K11000
EggNOG free text desc.1,3-beta-D-glucan synthase activity
EggNOG OGsKOG0916@1,KOG0916@2759
COG Functional cat.S
CAZyGT48
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01003
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size277
Cds size111
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11243.1011.1prot_H-elongata_contig11243.1011.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11243 7940..8050 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929646.0691717-UTR-H-elongata_contig11243:7382..75191622929646.0691717-UTR-H-elongata_contig11243:7382..7519Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11243 7383..7519 -
1691679104.0010056-UTR-H-elongata_contig11243:7382..75191691679104.0010056-UTR-H-elongata_contig11243:7382..7519Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11243 7383..7519 -
1622929646.0850508-UTR-H-elongata_contig11243:7915..79391622929646.0850508-UTR-H-elongata_contig11243:7915..7939Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11243 7916..7939 -
1691679104.0177357-UTR-H-elongata_contig11243:7915..79391691679104.0177357-UTR-H-elongata_contig11243:7915..7939Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11243 7916..7939 -
1622929646.1165829-UTR-H-elongata_contig11243:8050..80551622929646.1165829-UTR-H-elongata_contig11243:8050..8055Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11243 8051..8055 -
1691679104.0371642-UTR-H-elongata_contig11243:8050..80551691679104.0371642-UTR-H-elongata_contig11243:8050..8055Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11243 8051..8055 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929646.1024032-CDS-H-elongata_contig11243:7939..80501622929646.1024032-CDS-H-elongata_contig11243:7939..8050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11243 7940..8050 -
1691679104.0276-CDS-H-elongata_contig11243:7939..80501691679104.0276-CDS-H-elongata_contig11243:7939..8050Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11243 7940..8050 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11243.1011.1

>prot_H-elongata_contig11243.1011.1 ID=prot_H-elongata_contig11243.1011.1|Name=mRNA_H-elongata_contig11243.1011.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
MHYGHPDIFDKVFFMTSGGISKASSGINLSGDIFAG*
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mRNA from alignment at H-elongata_contig11243:7383..8055-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11243.1011.1 ID=mRNA_H-elongata_contig11243.1011.1|Name=mRNA_H-elongata_contig11243.1011.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=673bp|location=Sequence derived from alignment at H-elongata_contig11243:7383..8055- (Himanthalia elongata Himel1 dioecious)
TGAGGATGCACTACGGCCACCCCGATATATTCGACAAGGTTTTCTTCATG
ACTTCGGGAGGCATCAGCAAGGCTTCTAGCGGCATCAACCTCTCGGGAGA
CATATTCGCCGGCTAAAACGGGACCATCCGCGGCGGAAAGGTTTTTGTTT
TTTTCTTGTTCGCGCGGGGGGTCGGGGATGGTTAAATATTTCTGTGGGGA
AAACGTCGGGCAAGATGTTGCGTGGGGCTGTCCCCCGCCGTCGTTTGGAC
TTGTTTCTCCAAGGTCAAGGGCACGGGGTTGTGAATCGTCAACTGCCAAT
ATGTGGGCGTTTCGTTGTTCGTCGACAGTTATCCACTTGCCGCAAACTAA
ATTAAAGGATTGTATGTCTGTGTGGTGCCCCTGTAGGGACTTACGTAGAG
TTAAAGTTTTCTTTTATAATAATAATATAGCAATAGCTTGGTTCAGCTGC
CTGAACCCCTCCGCCCCCCTCCTTTGGAAGCCCTAACCGCCGCTTGGTCG
CGAACGCCGTGCTCTGTAACACTATGTAATATATAGGTGTTCTTCCGGGA
GTACGTTCAGGTGGGAAAGGGCCGCGACGTGGGTATGCAGCAAATCTTCA
AGTTCGAGGCGAAGCTGTCGCAGAGTGCCGCGGAGCAGACCCTCTCAAGG
GACGTGAGTTGTCTGGGAGACCG
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Coding sequence (CDS) from alignment at H-elongata_contig11243:7383..8055-

>mRNA_H-elongata_contig11243.1011.1 ID=mRNA_H-elongata_contig11243.1011.1|Name=mRNA_H-elongata_contig11243.1011.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at H-elongata_contig11243:7383..8055- (Himanthalia elongata Himel1 dioecious)
ATGCACTACGGCCACCCCGATATATTCGACAAGGTTTTCTTCATGACTTC
GGGAGGCATCAGCAAGGCTTCTAGCGGCATCAACCTCTCGGGAGACATAT
TCGCCGGCTAAATGCACTACGGCCACCCCGATATATTCGACAAGGTTTTC
TTCATGACTTCGGGAGGCATCAGCAAGGCTTCTAGCGGCATCAACCTCTC
GGGAGACATATTCGCCGGCTAA
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