mRNA_H-elongata_contig112356.1006.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112356.1006.1
Unique NamemRNA_H-elongata_contig112356.1006.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig112356.1006.1 vs. uniprot
Match: D7FSS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS6_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 2.540e-12
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:   22 RFTHSGAYLERICRETGFRILAANSVILRKNAGSPVRGFVFIAE 153
            R++HS  YLE +CR+ GF +LA++ VILRKNAG PV GFVF+ E
Sbjct:    2 RYSHSREYLEMVCRDAGFSVLASSDVILRKNAGMPVPGFVFVTE 45
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BLAST of mRNA_H-elongata_contig112356.1006.1 vs. uniprot
Match: A0A6H5L3S1_9PHAE (Methyltransf_25 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3S1_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 4.770e-10
Identity = 26/51 (50.98%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 FKILKNARFTHSGAYLERICRETGFRILAANSVILRKNAGSPVRGFVFIAE 153
            +++    R++HS  YLE +CR+ GF +LA+++V LRKNAG PV GFVF+ E
Sbjct:  536 YELQGTGRYSHSREYLETVCRDAGFSVLASSNVTLRKNAGVPVPGFVFVTE 586
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BLAST of mRNA_H-elongata_contig112356.1006.1 vs. uniprot
Match: A0A127CLX5_9HYPH (Methyltransferase n=7 Tax=Hyphomicrobiales TaxID=356 RepID=A0A127CLX5_9HYPH)

HSP 1 Score: 50.8 bits (120), Expect = 5.540e-6
Identity = 21/51 (41.18%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:    1 FKILKNARFTHSGAYLERICRETGFRILAANSVILRKNAGSPVRGFVFIAE 153
            F +L + R+ HS AY+ ++  + G  + A  S +LRK+AG PV G +F+AE
Sbjct:  261 FTLLPSLRYAHSAAYVRKLLAQAGLSLKAERSTVLRKDAGEPVPGILFLAE 311
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BLAST of mRNA_H-elongata_contig112356.1006.1 vs. uniprot
Match: UPI001580AA87 (methyltransferase domain-containing protein n=1 Tax=Martelella limonii TaxID=1647649 RepID=UPI001580AA87)

HSP 1 Score: 48.5 bits (114), Expect = 3.660e-5
Identity = 21/51 (41.18%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:    1 FKILKNARFTHSGAYLERICRETGFRILAANSVILRKNAGSPVRGFVFIAE 153
            F +L + R+ H+  Y+E +  ETGF + A     LRK+AG+PV G +F+A+
Sbjct:  261 FTLLPSLRYAHAFCYVETLLAETGFTLKAHGRAALRKDAGAPVPGILFLAQ 311
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112356.1006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FSS6_ECTSI2.540e-1261.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3S1_9PHAE4.770e-1050.98Methyltransf_25 domain-containing protein n=1 Tax=... [more]
A0A127CLX5_9HYPH5.540e-641.18Methyltransferase n=7 Tax=Hyphomicrobiales TaxID=3... [more]
UPI001580AA873.660e-541.18methyltransferase domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112356contigH-elongata_contig112356:58..210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929645.275585-CDS-H-elongata_contig112356:57..2101622929645.275585-CDS-H-elongata_contig112356:57..210Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112356 58..210 +
1691679103.6043437-CDS-H-elongata_contig112356:57..2101691679103.6043437-CDS-H-elongata_contig112356:57..210Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112356 58..210 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112356.1006.1prot_H-elongata_contig112356.1006.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112356 58..210 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112356.1006.1

>prot_H-elongata_contig112356.1006.1 ID=prot_H-elongata_contig112356.1006.1|Name=mRNA_H-elongata_contig112356.1006.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
FKILKNARFTHSGAYLERICRETGFRILAANSVILRKNAGSPVRGFVFIA
E
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mRNA from alignment at H-elongata_contig112356:58..210+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112356.1006.1 ID=mRNA_H-elongata_contig112356.1006.1|Name=mRNA_H-elongata_contig112356.1006.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig112356:58..210+ (Himanthalia elongata Himel1 dioecious)
TTCAAAATCTTGAAAAATGCTAGGTTTACGCACAGCGGAGCGTATCTGGA
AAGAATCTGCCGGGAGACAGGTTTCCGCATTCTCGCAGCGAACAGCGTCA
TCTTGCGGAAGAACGCCGGCTCGCCCGTGAGGGGGTTTGTGTTCATCGCG
GAG
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Coding sequence (CDS) from alignment at H-elongata_contig112356:58..210+

>mRNA_H-elongata_contig112356.1006.1 ID=mRNA_H-elongata_contig112356.1006.1|Name=mRNA_H-elongata_contig112356.1006.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig112356:58..210+ (Himanthalia elongata Himel1 dioecious)
TTCAAAATCTTGAAAAATGCTAGGTTTACGCACAGCGGAGCGTATCTGGA
AAGAATCTGCCGGGAGACAGGTTTCCGCATTCTCGCAGCGAACAGCGTCA
TCTTGCGGAAGAACGCCGGCTCGCCCGTGAGGGGGTTTGTGTTCATCGCG
GAGTTCAAAATCTTGAAAAATGCTAGGTTTACGCACAGCGGAGCGTATCT
GGAAAGAATCTGCCGGGAGACAGGTTTCCGCATTCTCGCAGCGAACAGCG
TCATCTTGCGGAAGAACGCCGGCTCGCCCGTGAGGGGGTTTGTGTTCATC
GCGGAG
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