mRNA_H-elongata_contig11234.1005.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11234.1005.1
Unique NamemRNA_H-elongata_contig11234.1005.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11234.1005.1 vs. uniprot
Match: D7FZ49_ECTSI (NAD-dependent epimerase/dehydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ49_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 3.190e-49
Identity = 80/100 (80.00%), Postives = 89/100 (89.00%), Query Frame = 1
Query:    4 TYGMTKACAELLVNDCTRKGFVDGRIARLPTVIVRPGPPNTAATGCFSSIPKAVLHGHHFISPVSPDVPHPCVGVSTAVQGLICLNNASEIEMGNRDRQV 303
            TYGMTKACAELLVNDCTRKGFVDGRIARLPTV+VRPGPPN AATGCFSS+PKAVLHG HFISPVSPD+ H CVG+ +AV GLI L++ASE + G RDR +
Sbjct:  198 TYGMTKACAELLVNDCTRKGFVDGRIARLPTVVVRPGPPNPAATGCFSSVPKAVLHGQHFISPVSPDLRHACVGLCSAVDGLIRLHDASEADFGPRDRAI 297          
BLAST of mRNA_H-elongata_contig11234.1005.1 vs. uniprot
Match: A0A4D9D647_9STRA (Epimerase domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D647_9STRA)

HSP 1 Score: 104 bits (259), Expect = 2.910e-24
Identity = 54/107 (50.47%), Postives = 68/107 (63.55%), Query Frame = 1
Query:    4 TYGMTKACAELLVNDCTRKGFVDGRIARLPTVIVRPGPPNTAATGCFSSIPKAVLHGHHFISPVSPDVPHPCVGVSTAVQGLICLNNASEIEMGNRDRQVYYSQNLP 324
            TYGMTKA  EL+VND TRKG+VDGR  RLPTVIVRPG  N A+TGCFS++ + +L GH ++ P  P   HP +     ++GL+ L       +G  DR V    NLP
Sbjct:  178 TYGMTKAVGELMVNDYTRKGWVDGRTGRLPTVIVRPGNKNGASTGCFSAVVRELLMGHDYVIPYDPRQTHPVISTRRTIKGLLALAEVEGESLGG-DRSV----NLP 279          
BLAST of mRNA_H-elongata_contig11234.1005.1 vs. uniprot
Match: A0A812Z4J5_9DINO (DenD protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812Z4J5_9DINO)

HSP 1 Score: 102 bits (255), Expect = 3.950e-24
Identity = 49/88 (55.68%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    4 TYGMTKACAELLVNDCTRKGFVDGRIARLPTVIVRPGPPNTAATGCFSSIPKAVLHGHHFISPVSPDVPHPCVGVSTAVQGLICLNNA 267
            TYGMTKA  ELLVND TRKGF+DGR ARLPTVIVRPG PN A T CFS + +  LHG   + PV+  +PH        +  L+ L++A
Sbjct:   88 TYGMTKAVCELLVNDYTRKGFIDGRTARLPTVIVRPGRPNAATTSCFSGVVREPLHGEDAVLPVARMLPHSVTSTRALISNLVILHDA 175          
BLAST of mRNA_H-elongata_contig11234.1005.1 vs. uniprot
Match: A0A437QH10_9PROT (NAD-dependent epimerase/dehydratase family protein n=1 Tax=Hwanghaeella grinnelliae TaxID=2500179 RepID=A0A437QH10_9PROT)

HSP 1 Score: 103 bits (256), Expect = 4.660e-24
Identity = 52/96 (54.17%), Postives = 64/96 (66.67%), Query Frame = 1
Query:    1 TTYGMTKACAELLVNDCTRKGFVDGRIARLPTVIVRPGPPNTAATGCFSSIPKAVLHGHHFISPVSPDVPHPCVGVSTAVQGLICLNNASEIEMGN 288
            TTYGMTKA  EL++ND TRKGF+DGR ARLPTVI+RPG PN AA+  FS + +  L G     PV PDV HP +G  T V G++ L  A    +G+
Sbjct:  152 TTYGMTKAVLELMINDYTRKGFLDGRSARLPTVIIRPGKPNAAASSFFSGMFREPLAGVECKIPVPPDVRHPVIGYRTVVDGILALYEADSDAIGD 247          
BLAST of mRNA_H-elongata_contig11234.1005.1 vs. uniprot
Match: A0A812N7H2_9DINO (DenD protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812N7H2_9DINO)

HSP 1 Score: 102 bits (255), Expect = 9.300e-24
Identity = 49/88 (55.68%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    4 TYGMTKACAELLVNDCTRKGFVDGRIARLPTVIVRPGPPNTAATGCFSSIPKAVLHGHHFISPVSPDVPHPCVGVSTAVQGLICLNNA 267
            TYGMTKA  ELLVND TRKGF+DGR ARLPTVIVRPG PN A T CFS + +  LHG   + PV+  +PH        +  L+ L++A
Sbjct:  164 TYGMTKAVCELLVNDYTRKGFLDGRTARLPTVIVRPGRPNAATTSCFSGVVREPLHGEDAVLPVARTLPHSVTSTRALISNLVILHDA 251          
BLAST of mRNA_H-elongata_contig11234.1005.1 vs. uniprot
Match: A0A800A3D9_9PROT (NAD-dependent epimerase/dehydratase family protein n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A800A3D9_9PROT)

HSP 1 Score: 100 bits (248), Expect = 1.590e-23
Identity = 54/101 (53.47%), Postives = 66/101 (65.35%), Query Frame = 1
Query:    1 TTYGMTKACAELLVNDCTRKGFVDGRIARLPTVIVRPGPPNTAATGCFSSIPKAVLHGHHFISPVSPDVPHPCVGVSTAVQGLICLNNASEIEMGNRDRQV 303
            TTYGMTKA  EL++ND TRKGF+DGR ARLPTVI+RPGPPN AA+G  S + +  L G+ F+ PV        +G   AV GLI L +A    +G  DR V
Sbjct:   66 TTYGMTKAIGELMINDYTRKGFIDGRAARLPTVIIRPGPPNAAASGFASGVFREPLAGNEFVLPVGMGTKMMVLGTRNAVAGLIGLMDADGDALGG-DRMV 165          
BLAST of mRNA_H-elongata_contig11234.1005.1 vs. uniprot
Match: A0A1Q9DKX0_SYMMI (Uncharacterized protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9DKX0_SYMMI)

HSP 1 Score: 103 bits (257), Expect = 2.370e-23
Identity = 49/88 (55.68%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    4 TYGMTKACAELLVNDCTRKGFVDGRIARLPTVIVRPGPPNTAATGCFSSIPKAVLHGHHFISPVSPDVPHPCVGVSTAVQGLICLNNA 267
            TYGMTKA  ELLVND TRKGF+DGR ARLPTVIVRPG PN A T CFS + +  LHG   + PV+  +PH        +  L+ L++A
Sbjct:  347 TYGMTKAVCELLVNDYTRKGFIDGRTARLPTVIVRPGRPNAATTSCFSGVVREPLHGEDAVLPVARTLPHSVTSTRALISNLVILHDA 434          
BLAST of mRNA_H-elongata_contig11234.1005.1 vs. uniprot
Match: A0A812U013_9DINO (DenD protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812U013_9DINO)

HSP 1 Score: 102 bits (255), Expect = 4.630e-23
Identity = 49/88 (55.68%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    4 TYGMTKACAELLVNDCTRKGFVDGRIARLPTVIVRPGPPNTAATGCFSSIPKAVLHGHHFISPVSPDVPHPCVGVSTAVQGLICLNNA 267
            TYGMTKA  ELLVND TRKGF+DGR ARLPTVIVRPG PN A T CFS + +  LHG   + PV+  +PH        +  L+ L++A
Sbjct:   88 TYGMTKAVCELLVNDYTRKGFIDGRTARLPTVIVRPGRPNAATTSCFSGVVREPLHGEDAVLPVARMLPHSVTSTRALISNLVILHDA 175          
BLAST of mRNA_H-elongata_contig11234.1005.1 vs. uniprot
Match: A0A2S6TU17_9PROT (Putative epimerase/dehydratase n=1 Tax=Alphaproteobacteria bacterium MarineAlpha3_Bin3 TaxID=2013069 RepID=A0A2S6TU17_9PROT)

HSP 1 Score: 100 bits (248), Expect = 7.410e-23
Identity = 54/101 (53.47%), Postives = 66/101 (65.35%), Query Frame = 1
Query:    1 TTYGMTKACAELLVNDCTRKGFVDGRIARLPTVIVRPGPPNTAATGCFSSIPKAVLHGHHFISPVSPDVPHPCVGVSTAVQGLICLNNASEIEMGNRDRQV 303
            TTYGMTKA  EL++ND TRKGF+DGR ARLPTVI+RPGPPN AA+G  S + +  L G+ F+ PV        +G   AV GLI L +A    +G  DR V
Sbjct:  155 TTYGMTKAIGELMINDYTRKGFIDGRAARLPTVIIRPGPPNAAASGFASGVFREPLAGNEFVLPVGMGTKMMVLGTRNAVAGLIGLMDADGDALGG-DRMV 254          
BLAST of mRNA_H-elongata_contig11234.1005.1 vs. uniprot
Match: A0A7S4HM38_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HM38_9STRA)

HSP 1 Score: 102 bits (253), Expect = 8.390e-23
Identity = 50/88 (56.82%), Postives = 61/88 (69.32%), Query Frame = 1
Query:    1 TTYGMTKACAELLVNDCTRKGFVDGRIARLPTVIVRPGPPNTAATGCFSSIPKAVLHGHHFISPVSPDVPHPCVGVSTAVQGLICLNN 264
            TTYGMTKAC ELL++D +R+GFVDGR ARLPTV+VR G PN A TGCFS + +  L G   I P+ PDV H   G+  AV  L  L++
Sbjct:  192 TTYGMTKACGELLLSDYSRRGFVDGRGARLPTVVVRAGRPNAATTGCFSGVVRETLGGIDSILPIGPDVKHAVTGMRNAVDALRTLHD 279          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11234.1005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ49_ECTSI3.190e-4980.00NAD-dependent epimerase/dehydratase n=1 Tax=Ectoca... [more]
A0A4D9D647_9STRA2.910e-2450.47Epimerase domain-containing protein n=3 Tax=Monodo... [more]
A0A812Z4J5_9DINO3.950e-2455.68DenD protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
A0A437QH10_9PROT4.660e-2454.17NAD-dependent epimerase/dehydratase family protein... [more]
A0A812N7H2_9DINO9.300e-2455.68DenD protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
A0A800A3D9_9PROT1.590e-2353.47NAD-dependent epimerase/dehydratase family protein... [more]
A0A1Q9DKX0_SYMMI2.370e-2355.68Uncharacterized protein n=2 Tax=Symbiodinium TaxID... [more]
A0A812U013_9DINO4.630e-2355.68DenD protein n=1 Tax=Symbiodinium sp. CCMP2592 Tax... [more]
A0A2S6TU17_9PROT7.410e-2353.47Putative epimerase/dehydratase n=1 Tax=Alphaproteo... [more]
A0A7S4HM38_9STRA8.390e-2356.82Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11234contigH-elongata_contig11234:119..1384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.8
Seed ortholog evalue6e-39
Seed eggNOG ortholog2880.D7FZ49
EggNOG free text desc.L-threonine 3-dehydrogenase activity
EggNOG OGsCOG0451@1,KOG2774@2759
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size357
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11234.1005.1prot_H-elongata_contig11234.1005.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11234 131..1384 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929645.1660388-UTR-H-elongata_contig11234:118..1301622929645.1660388-UTR-H-elongata_contig11234:118..130Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11234 119..130 +
1691679103.553147-UTR-H-elongata_contig11234:118..1301691679103.553147-UTR-H-elongata_contig11234:118..130Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11234 119..130 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929645.1903713-CDS-H-elongata_contig11234:130..1741622929645.1903713-CDS-H-elongata_contig11234:130..174Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11234 131..174 +
1691679103.5698092-CDS-H-elongata_contig11234:130..1741691679103.5698092-CDS-H-elongata_contig11234:130..174Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11234 131..174 +
1622929645.205372-CDS-H-elongata_contig11234:447..5621622929645.205372-CDS-H-elongata_contig11234:447..562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11234 448..562 +
1691679103.5860791-CDS-H-elongata_contig11234:447..5621691679103.5860791-CDS-H-elongata_contig11234:447..562Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11234 448..562 +
1622929645.2230916-CDS-H-elongata_contig11234:1198..13841622929645.2230916-CDS-H-elongata_contig11234:1198..1384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11234 1199..1384 +
1691679103.5969648-CDS-H-elongata_contig11234:1198..13841691679103.5969648-CDS-H-elongata_contig11234:1198..1384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11234 1199..1384 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11234.1005.1

>prot_H-elongata_contig11234.1005.1 ID=prot_H-elongata_contig11234.1005.1|Name=mRNA_H-elongata_contig11234.1005.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MTKACAELLVNDCTRKGFVDGRIARLPTVIVRPGPPNTAATGCFSSIPKA
VLHGHHFISPVSPDVPHPCVGVSTAVQGLICLNNASEIEMGNRDRQVYYS
QNLPMRMRRRSDES*
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mRNA from alignment at H-elongata_contig11234:119..1384+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11234.1005.1 ID=mRNA_H-elongata_contig11234.1005.1|Name=mRNA_H-elongata_contig11234.1005.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1266bp|location=Sequence derived from alignment at H-elongata_contig11234:119..1384+ (Himanthalia elongata Himel1 dioecious)
ACAACCTACGGCATGACCAAGGCCTGCGCGGAGCTTTTGGTTAATGACTG CACAAGGTCCGATGAAAATACTTTGCCGCCTGGTTAGCACTTTAAACCCG CTGTCCAGAGGAGAAAATAAACAGCTAGGTACAGCAAGCAGAACACAAAA GGATTCGTCGCCACGGGGGTGCACGGTGAAATCCGGAAACGTTTCATGTA AACCTTATCTTCCTATGCTCGACAACATCAAACGCGTCGTACATCGTTAC GCCTGCTCCCACGCTAAGGCCTCGTTTTTGGCTTTAGCTAAGCCTCTCTT GGCCCCCCTTTTCAATTTCGACCCTCCAGGAAAGGGTTTGTAGACGGCCG CATCGCGCGCTTGCCTACAGTGATCGTTAGGCCTGGTCCTCCCAACACAG CGGCGACGGGATGTTTCAGCTCCATACCCAAGGCAGTTCTGCATGTGAGG CGTTTTTTACTTCCCACATGGTGAGAATTTCCGTTCATGCTGGACTGACG CTTCCCTCTCGCACGAACAAGCGTTTGCGCGTGCGTACCTTGGTATGAAT AATACATTATATCGGGGTGGACGCGAGCTATAGCTATTGCACATAGTAGA TCGGTAAGGGAGGGGAAGTTGTGGTCCAGCAGGGAGACGTTTCGAGGGCT ACTACGCGCTCGGCGCGACTCTGGGAACACACAGCAGTAAGTGGGTGATT TATTTATTTATTATTTAACGTCCGGTACCACCGTGTTTATAATAGAAGTT TAAGTGATTTTGCAGAACTACTCTCCACACGTTTCCTTGTCCATGGCAGA CATGCTGTTTGTCGCACCCAACATAGCTTCCGAGGTTGTCCAGTTCTTGA ATGAAATCAATGCCCCGGACGCTATGTCACCATATCAACGCCGATTTATA CCGATTTATCGTCCTACGTCCTGCACCTGATTGGCGAGTGGAGGTGGGGG GTCGCAAGCTGGAGAGATGTCGACGCTTCAAATTTGGGACAGCGCGATCC GTCGGGCAAAATCAAACCCAACCTGAATTGGCGCCCCGTGTGCCTGCCCG ATGTTTCGCGCCTGCCAAAAACCACAACAGGGACACCACTTCATCTCGCC AGTATCACCGGACGTCCCACACCCGTGTGTGGGCGTGTCTACCGCAGTTC AGGGCTTGATTTGCCTCAATAATGCCTCGGAGATCGAGATGGGGAACAGA GATCGGCAAGTTTATTATTCCCAAAATCTCCCGATGAGAATGAGGAGGCG TTCTGATGAATCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig11234:119..1384+

>mRNA_H-elongata_contig11234.1005.1 ID=mRNA_H-elongata_contig11234.1005.1|Name=mRNA_H-elongata_contig11234.1005.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig11234:119..1384+ (Himanthalia elongata Himel1 dioecious)
ATGACCAAGGCCTGCGCGGAGCTTTTGGTTAATGACTGCACAAGATGACC
AAGGCCTGCGCGGAGCTTTTGGTTAATGACTGCACAAGGAAAGGGTTTGT
AGACGGCCGCATCGCGCGCTTGCCTACAGTGATCGTTAGGCCTGGTCCTC
CCAACACAGCGGCGACGGGATGTTTCAGCTCCATACCCAAGGCAGTTCTG
CATGAAAGGGTTTGTAGACGGCCGCATCGCGCGCTTGCCTACAGTGATCG
TTAGGCCTGGTCCTCCCAACACAGCGGCGACGGGATGTTTCAGCTCCATA
CCCAAGGCAGTTCTGCATGGACACCACTTCATCTCGCCAGTATCACCGGA
CGTCCCACACCCGTGTGTGGGCGTGTCTACCGCAGTTCAGGGCTTGATTT
GCCTCAATAATGCCTCGGAGATCGAGATGGGGAACAGAGATCGGCAAGTT
TATTATTCCCAAAATCTCCCGATGAGAATGAGGAGGCGTTCTGATGAATC
TTGAGGACACCACTTCATCTCGCCAGTATCACCGGACGTCCCACACCCGT
GTGTGGGCGTGTCTACCGCAGTTCAGGGCTTGATTTGCCTCAATAATGCC
TCGGAGATCGAGATGGGGAACAGAGATCGGCAAGTTTATTATTCCCAAAA
TCTCCCGATGAGAATGAGGAGGCGTTCTGATGAATCTTGA
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