mRNA_H-elongata_contig112294.1002.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112294.1002.1
Unique NamemRNA_H-elongata_contig112294.1002.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig112294.1002.1 vs. uniprot
Match: D7FRE0_ECTSI (DUF1084 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRE0_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 7.290e-34
Identity = 63/71 (88.73%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:    1 VLFDLPDFMIISAYTLLAVVWAEAYLQSRRHWLSARVYKRQLLLGYMIFNAALYAGQLVMYTLLFLPSFSK 213
            VLFDLPDFMI+SAY+LLAVVWAEA+LQSRRHWLSARVYKRQLLLGYMIFN+ALYAGQL++YTLLFLPSF++
Sbjct:   99 VLFDLPDFMIVSAYSLLAVVWAEAFLQSRRHWLSARVYKRQLLLGYMIFNSALYAGQLILYTLLFLPSFNQ 169
[Close]
BLAST of mRNA_H-elongata_contig112294.1002.1 vs. uniprot
Match: W7TTU2_9STRA (DUF1084 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTU2_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.880e-21
Identity = 44/67 (65.67%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:    1 VLFDLPDFMIISAYTLLAVVWAEAYLQSRRHWLSARVYKRQLLLGYMIFNAALYAGQLVMYTLLFLP 201
            +LF+LPDF+ +SAY LLA+VWAEA++QSR HWLS + ++R  LL Y++FNA LY GQLV+YTLLFLP
Sbjct:  105 ILFNLPDFVFVSAYVLLALVWAEAFIQSRSHWLSIKQFRRMWLLSYLVFNACLYLGQLVLYTLLFLP 171
[Close]
BLAST of mRNA_H-elongata_contig112294.1002.1 vs. uniprot
Match: A0A7S1U7L3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7L3_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.130e-20
Identity = 41/70 (58.57%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    1 VLFDLPDFMIISAYTLLAVVWAEAYLQSRRHWLSARVYKRQLLLGYMIFNAALYAGQLVMYTLLFLPSFS 210
            VLFDLPD+MI++ +TLL +VWAE +L SR HWLS++ ++R+ L+GY++FNA +YA QLV+Y+LLF+P+ S
Sbjct:  110 VLFDLPDYMIVTTFTLLVLVWAEVFLDSRAHWLSSKTFRRRALIGYLVFNATVYATQLVLYSLLFVPTIS 179
[Close]
BLAST of mRNA_H-elongata_contig112294.1002.1 vs. uniprot
Match: A0A835Z1P3_9STRA (DUF1084 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1P3_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.390e-20
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    1 VLFDLPDFMIISAYTLLAVVWAEAYLQSRRHWLSARVYKRQLLLGYMIFNAALYAGQLVMYTLLFLPS 204
            VLFD PDF+ +SAY LLAVVWAEA+L SR HWLSAR Y++  L+ Y++FNAALY  QL++Y  LFLPS
Sbjct:  110 VLFDFPDFVALSAYALLAVVWAEAFLASRSHWLSARRYRQGFLMAYLVFNAALYMAQLLLYGALFLPS 177
[Close]
BLAST of mRNA_H-elongata_contig112294.1002.1 vs. uniprot
Match: G4YG26_PHYSP (DUF1084 domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=G4YG26_PHYSP)

HSP 1 Score: 79.0 bits (193), Expect = 1.120e-15
Identity = 37/66 (56.06%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 VLFDLPDFMIISAYTLLAVVWAEAYLQSRRHWLSARVYKRQLLLGYMIFNAALYAGQLVMYTLLFL 198
            VLF+LPDF+ +S+Y LL +VWAEA+  SRRHW SA V++R+ ++ Y++FN  LY  QLV+Y  LFL
Sbjct:  132 VLFNLPDFLFVSSYLLLVLVWAEAFQSSRRHWFSAAVFRRKWMIFYLVFNGGLYLTQLVLYASLFL 197
[Close]
BLAST of mRNA_H-elongata_contig112294.1002.1 vs. uniprot
Match: A0A8J5IPR8_9STRA (DUF1084 domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IPR8_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.320e-15
Identity = 37/66 (56.06%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 VLFDLPDFMIISAYTLLAVVWAEAYLQSRRHWLSARVYKRQLLLGYMIFNAALYAGQLVMYTLLFL 198
            VLF+LPDF+ +S+Y LL +VWAEA+  SRRHW SA V++R+ ++ Y++FN  LY  QLV+Y  LFL
Sbjct:  129 VLFNLPDFLFVSSYLLLVLVWAEAFQSSRRHWFSAAVFRRKWMIFYLVFNGGLYLTQLVLYASLFL 194
[Close]
BLAST of mRNA_H-elongata_contig112294.1002.1 vs. uniprot
Match: A0A6A3M3K5_9STRA (DUF1084 domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3M3K5_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.870e-15
Identity = 36/66 (54.55%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 VLFDLPDFMIISAYTLLAVVWAEAYLQSRRHWLSARVYKRQLLLGYMIFNAALYAGQLVMYTLLFL 198
            VLF+LPDF+ +S+Y LL +VWAEA+  SRRHW SA V++R+ ++ Y++FN  +Y  QLV+Y  LFL
Sbjct:  132 VLFNLPDFLFVSSYLLLVLVWAEAFQSSRRHWFSAAVFRRKWMIFYLVFNGGMYLAQLVLYASLFL 197
[Close]
BLAST of mRNA_H-elongata_contig112294.1002.1 vs. uniprot
Match: A0A5D6XPJ3_9STRA (DUF1084 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XPJ3_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.980e-15
Identity = 38/66 (57.58%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 VLFDLPDFMIISAYTLLAVVWAEAYLQSRRHWLSARVYKRQLLLGYMIFNAALYAGQLVMYTLLFL 198
            VLF+LPDF+ +S+Y LL +VWAEA+  SRRHW SA  ++R+ ++ Y+IFN  LY  QLV+YT LFL
Sbjct:  121 VLFNLPDFLFVSSYLLLVLVWAEAFQSSRRHWFSAVDFRRRWMIFYLIFNGTLYVMQLVLYTALFL 186
[Close]
BLAST of mRNA_H-elongata_contig112294.1002.1 vs. uniprot
Match: A0A662XNE0_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XNE0_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.560e-15
Identity = 37/66 (56.06%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:    1 VLFDLPDFMIISAYTLLAVVWAEAYLQSRRHWLSARVYKRQLLLGYMIFNAALYAGQLVMYTLLFL 198
            VLF+LPDF+ +S+Y LL +VWAEA+  SRRHW SA  ++R+ ++ Y+IFN  LY  QLV+Y  LFL
Sbjct:  134 VLFNLPDFLFVSSYLLLVLVWAEAFQSSRRHWFSAATFRRRWMIFYLIFNGGLYLTQLVLYASLFL 199
[Close]
BLAST of mRNA_H-elongata_contig112294.1002.1 vs. uniprot
Match: A0A3R7HV05_9STRA (DUF1084 domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HV05_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.890e-15
Identity = 37/66 (56.06%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:    1 VLFDLPDFMIISAYTLLAVVWAEAYLQSRRHWLSARVYKRQLLLGYMIFNAALYAGQLVMYTLLFL 198
            VLF+LPDF+ +S+Y LL +VWAEA+  SRRHW SA  ++R+ ++ Y+IFN  LY  QLV+Y  LFL
Sbjct:  128 VLFNLPDFLFVSSYLLLVLVWAEAFQSSRRHWFSAAAFRRKWMIFYLIFNGGLYLTQLVLYASLFL 193
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112294.1002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRE0_ECTSI7.290e-3488.73DUF1084 domain-containing protein n=2 Tax=Ectocarp... [more]
W7TTU2_9STRA1.880e-2165.67DUF1084 domain-containing protein n=2 Tax=Monodops... [more]
A0A7S1U7L3_9STRA1.130e-2058.57Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A835Z1P3_9STRA1.390e-2066.18DUF1084 domain-containing protein (Fragment) n=1 T... [more]
G4YG26_PHYSP1.120e-1556.06DUF1084 domain-containing protein n=12 Tax=Phytoph... [more]
A0A8J5IPR8_9STRA1.320e-1556.06DUF1084 domain-containing protein n=1 Tax=Phytopht... [more]
A0A6A3M3K5_9STRA1.870e-1554.55DUF1084 domain-containing protein n=1 Tax=Phytopht... [more]
A0A5D6XPJ3_9STRA1.980e-1557.58DUF1084 domain-containing protein n=1 Tax=Pythium ... [more]
A0A662XNE0_9STRA2.560e-1556.06Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A3R7HV05_9STRA2.890e-1556.06DUF1084 domain-containing protein n=4 Tax=Phytopht... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112294contigH-elongata_contig112294:1250..2057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue1.7e-22
Seed eggNOG ortholog2880.D7FRE0
EggNOG OGs28PC9@1,2QVZM@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_002580.1
Exons2
Model size222
Cds size198
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112294.1002.1prot_H-elongata_contig112294.1002.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112294 1274..2057 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929644.992706-UTR-H-elongata_contig112294:1249..12731622929644.992706-UTR-H-elongata_contig112294:1249..1273Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112294 1250..1273 +
1691679103.5007787-UTR-H-elongata_contig112294:1249..12731691679103.5007787-UTR-H-elongata_contig112294:1249..1273Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112294 1250..1273 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929645.0076544-CDS-H-elongata_contig112294:1273..13301622929645.0076544-CDS-H-elongata_contig112294:1273..1330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112294 1274..1330 +
1691679103.510305-CDS-H-elongata_contig112294:1273..13301691679103.510305-CDS-H-elongata_contig112294:1273..1330Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112294 1274..1330 +
1622929645.0187223-CDS-H-elongata_contig112294:1916..20571622929645.0187223-CDS-H-elongata_contig112294:1916..2057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112294 1917..2057 +
1691679103.5183096-CDS-H-elongata_contig112294:1916..20571691679103.5183096-CDS-H-elongata_contig112294:1916..2057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112294 1917..2057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112294.1002.1

>prot_H-elongata_contig112294.1002.1 ID=prot_H-elongata_contig112294.1002.1|Name=mRNA_H-elongata_contig112294.1002.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
MIISAYTLLAVVWAEAYLQSRRHWLSARVYKRQLLLGYMIFNAALYAGQL
VMYTLLFLPSFSKVS*
back to top

mRNA from alignment at H-elongata_contig112294:1250..2057+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112294.1002.1 ID=mRNA_H-elongata_contig112294.1002.1|Name=mRNA_H-elongata_contig112294.1002.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=808bp|location=Sequence derived from alignment at H-elongata_contig112294:1250..2057+ (Himanthalia elongata Himel1 dioecious)
GTCTTGTTCGATCTGCCCGACTTTATGATCATCAGCGCCTACACCCTGCT
CGCCGTTGTGTGGGCCGAAGCTTACCTACAGGTTCGAAATTTCTCTGTAG
CGGTGCGACGACTCTCCTCTGGTCTTTTGCACGTACCGCACTGCTTCGCG
CACTCGCTCACGTTCGCCCTCTTCTTTTTTTAGGAGCGTCGACCGAACAA
GTTCTTCGGGTCGAGTTTCTTAGCTTTCTGTACCTTTGCGCCGGAGGGCA
TGAATAAAACATCGATTGATTGCATGACTTTTGAGAATGCTTGGACGCGC
CTGCGATCAGGGGGGGGGTGGTGTTATGCGGGGTGTCTTGAGAGTATCGC
CTGTAGGCGTTCGATGCGGAGCAATACGGGGCCCAACGTTGGCGTTCGTA
ACTTTTGTGGGCTAAAAACTTATGTTCCTGCTCAGTAAAAGTCCGCGTGG
ACGATGCCCCCCTCTTCTATAGTCTTTTATAGAGGATTCCAGGGGACGAT
ATTATTTTGTGATGCCACGAGAGAGCCCTTCCTGTCCCTTCCCTTTCCTT
ATTTGGCCGACATGTCAGCCTGCCCTAAAGGATAAAAGCGCTCGTCGATT
TTTTGTAGCACGCCTTTAGGGCGCCGCTGAACGCGATCGGATGTATCGTT
GATCGATTTCGCCGCAGTCTCGCAGGCACTGGCTCTCGGCGAGGGTATAC
AAGCGGCAGCTGCTCCTGGGCTACATGATCTTCAACGCCGCTCTTTACGC
GGGCCAGCTAGTCATGTACACGCTGCTTTTCTTACCCAGCTTCAGCAAGG
TGAGTTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig112294:1250..2057+

>mRNA_H-elongata_contig112294.1002.1 ID=mRNA_H-elongata_contig112294.1002.1|Name=mRNA_H-elongata_contig112294.1002.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig112294:1250..2057+ (Himanthalia elongata Himel1 dioecious)
ATGATCATCAGCGCCTACACCCTGCTCGCCGTTGTGTGGGCCGAAGCTTA
CCTACAGATGATCATCAGCGCCTACACCCTGCTCGCCGTTGTGTGGGCCG
AAGCTTACCTACAGTCTCGCAGGCACTGGCTCTCGGCGAGGGTATACAAG
CGGCAGCTGCTCCTGGGCTACATGATCTTCAACGCCGCTCTTTACGCGGG
CCAGCTAGTCATGTACACGCTGCTTTTCTTACCCAGCTTCAGCAAGGTGA
GTTAGTCTCGCAGGCACTGGCTCTCGGCGAGGGTATACAAGCGGCAGCTG
CTCCTGGGCTACATGATCTTCAACGCCGCTCTTTACGCGGGCCAGCTAGT
CATGTACACGCTGCTTTTCTTACCCAGCTTCAGCAAGGTGAGTTAG
back to top