mRNA_H-elongata_contig11229.1000.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11229.1000.1
Unique NamemRNA_H-elongata_contig11229.1000.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11229.1000.1 vs. uniprot
Match: D7FQQ5_ECTSI (4'-phosphopantetheinyl transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQQ5_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 1.760e-57
Identity = 101/131 (77.10%), Postives = 115/131 (87.79%), Query Frame = 1
Query:    1 FLGGRLAIRRAMVGMKEASLQPPS-AILHDQYGAPVLPDGVAASISHKRHVAVALVQPGCEGHIGVDIELPAVRRR-DLRRRVLTARECDSLGGVAGLSEEEEVLLRFSMKEAVYKAAHPLLRRSLVFKDV 387
            FLGGRLAIRRA+ GM++ S    S AILH+Q GAPVLP+GV+ASISHK+H+AVALVQ GCEGH+G+DIELPAV+RR DLRRRVLT RECDSLGGV G+S++EEVLLRFSMKEAVYKAAHP L R L FKDV
Sbjct:  148 FLGGRLAIRRALNGMEDVSAAASSQAILHNQDGAPVLPEGVSASISHKQHLAVALVQSGCEGHLGIDIELPAVQRRLDLRRRVLTPRECDSLGGVDGMSDQEEVLLRFSMKEAVYKAAHPFLHRPLGFKDV 278          
BLAST of mRNA_H-elongata_contig11229.1000.1 vs. uniprot
Match: A0A7S2SQZ6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQZ6_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.330e-25
Identity = 74/137 (54.01%), Postives = 87/137 (63.50%), Query Frame = 1
Query:    1 FLGGRLAIRRAMVGMKEASLQPPSAILHDQYGAPVLPDGVAASISHKRHVAVALVQPG-CE---GHIGVDIE--LPAVRRRDLRRRVLTARECDSLGGV--AGLSEEEEVLLRFSMKEAVYKAAHPLLRRSLVFKDV 387
            FLGGR+AIRRAM G K A    P  I     GAPVL +G+  SISHKRHVAVALVQ G C    G IGVDIE   P   +  L +RVL   E D LG +   GL++++EVLL FS KEAVYKA  P L R + F++V
Sbjct:  126 FLGGRVAIRRAM-GAKLAETVGP--IHRSSRGAPVLSNGIRGSISHKRHVAVALVQTGPCSPVGGRIGVDIEDLHPTRYKGRLAQRVLLEEEVDKLGSLESTGLTKDQEVLLAFSFKEAVYKAIDPFLERFVSFQEV 259          
BLAST of mRNA_H-elongata_contig11229.1000.1 vs. uniprot
Match: A0A4D9CTH4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTH4_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.050e-24
Identity = 65/138 (47.10%), Postives = 91/138 (65.94%), Query Frame = 1
Query:    1 FLGGRLAIRRAMVGMKEASLQPPSAILHDQYGAPVLPDGVAASISHKRHVAVALVQPGCE------GHIGVDIEL--PAVRRRDLRRRVLTARECDSLGGVA--GLSEEEEVLLRFSMKEAVYKAAHPLLRRSLVFKD 384
            FLGGRLA+RR++  + +  ++   A+L D+ GAP LP  V ASISHK+ +A+ L++   E       +IGVDIE+  P      +  RVLT RE D LGG+A  G+S E E+LLRFS+KE+VYKA +P LRR + F++
Sbjct:  114 FLGGRLALRRSLRKLPQP-IRIEQAVLRDEKGAPALPSHVQASISHKQDLAICLLRSVEEDPNRALSNIGVDIEICQPRPSTNSIATRVLTRREQDELGGLASLGISGESELLLRFSLKESVYKAIYPFLRRYVAFQE 250          
BLAST of mRNA_H-elongata_contig11229.1000.1 vs. uniprot
Match: W7TPT1_9STRA (4-phosphopantetheinyl transferase entd n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPT1_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.500e-24
Identity = 65/138 (47.10%), Postives = 91/138 (65.94%), Query Frame = 1
Query:    1 FLGGRLAIRRAMVGMKEASLQPPSAILHDQYGAPVLPDGVAASISHKRHVAVALVQPGCE------GHIGVDIEL--PAVRRRDLRRRVLTARECDSLGGVA--GLSEEEEVLLRFSMKEAVYKAAHPLLRRSLVFKD 384
            FLGGRLA+RR++  + +  ++   A+L D+ GAP LP  V ASISHK+ +A+ L++   E       +IGVDIE+  P      +  RVLT RE D LGG+A  G+S E E+LLRFS+KE+VYKA +P LRR + F++
Sbjct:  198 FLGGRLALRRSLRKLPQP-IRIEQAVLRDEKGAPALPSHVQASISHKQDLAICLLRSVEEDPNRALSNIGVDIEICQPRPSTNSIATRVLTRREQDELGGLASLGISGESELLLRFSLKESVYKAIYPFLRRYVAFQE 334          
BLAST of mRNA_H-elongata_contig11229.1000.1 vs. uniprot
Match: A0A7S4T7K3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T7K3_9STRA)

HSP 1 Score: 104 bits (259), Expect = 4.620e-24
Identity = 61/137 (44.53%), Postives = 84/137 (61.31%), Query Frame = 1
Query:    1 FLGGRLAIRRAMVGMKEASLQP-------PSAILHDQYGAPVLPDGVAASISHKRHVAVALVQPGCEGH--IGVDIELPAVRRRDLRRRVLTARECDSLGGVAGLSEEEEVLLRFSMKEAVYKAAHPLLRRSLVFKD 384
            F  GRLA+R A++    +S           +AIL D++G P +P GV  SI+HK+   VALV         +GVD+E     RR + RR+LT  E  +LG V G+++EEEVLLRFS+KE+VYKA HPLL + + FK+
Sbjct:  163 FFVGRLAMRHALLASHTSSFAALPAVSADDAAILKDEHGRPTMPKGVLGSITHKKKTGVALVSSASTRRRGVGVDLEQTCTGRRSIARRILTEGEILNLGCVEGVTKEEEVLLRFSLKESVYKAMHPLLNQYIGFKE 299          
BLAST of mRNA_H-elongata_contig11229.1000.1 vs. uniprot
Match: A0A838HLQ8_9BACT (4'-phosphopantetheinyl transferase superfamily protein n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A838HLQ8_9BACT)

HSP 1 Score: 99.0 bits (245), Expect = 5.610e-23
Identity = 59/130 (45.38%), Postives = 79/130 (60.77%), Query Frame = 1
Query:    1 FLGGRLAIRRAMVGMKEASLQPPSAILHDQYGAPVLPDGVAASISHKRHVAVALVQPGCEGHIGVDIELPAVRRRDLRRRVLTARECDSLGGVAGLSEEEEVLLRFSMKEAVYKAAHPLLRRSLVFKDVS 390
            ++GGR+A+ RA+    E + Q   AIL  + GAP LP G+A S+SHK  +AVALV P     +G+DIE   V R ++ R VLT  E   L  +       EVLLRFS KEAVYKA  P +RR + F++V+
Sbjct:   55 WVGGRVALHRAL----ERAGQQAGAILATERGAPSLPPGIAGSVSHKEGLAVALVAPAAGWRVGIDIERMRVPRAEIERHVLTEGERQELTALRQEERWREVLLRFSAKEAVYKALDPFVRRYVSFQEVT 180          
BLAST of mRNA_H-elongata_contig11229.1000.1 vs. uniprot
Match: A0A7S2P1V1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P1V1_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 4.670e-22
Identity = 53/112 (47.32%), Postives = 73/112 (65.18%), Query Frame = 1
Query:   70 SAILHDQYGAPVLPDGVAASISHKRHVAVALVQPGCEGHI-------GVDIELPAVRRRDLRRRVLTARECDSLGGVAGLSEEEEVLLRFSMKEAVYKAAHPLLRRSLVFKD 384
            SAIL D YG P +P G   SISHKR  AVALVQ      +       GV +++  +R+  + +RVLT+ E   LG +A +SEEEEVLLRFS+KE+VYKA HP++ + + F++
Sbjct:   90 SAILKDDYGRPTVPKGFLGSISHKRSTAVALVQADKSNCVEMQKDMKGVGVDIEDIRKTRIAKRVLTSTELIDLGNLASVSEEEEVLLRFSLKESVYKAIHPIVNQYVGFQE 201          
BLAST of mRNA_H-elongata_contig11229.1000.1 vs. uniprot
Match: A0A7S2A1R9_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A1R9_TRICV)

HSP 1 Score: 96.3 bits (238), Expect = 1.770e-21
Identity = 59/126 (46.83%), Postives = 76/126 (60.32%), Query Frame = 1
Query:   37 VGMKEASLQPPSAILHDQYGAPVLPDGVAASISHKRHVAVALV------QPGCEGH----IGVDIELPAVRRRDLRRRVLTARECDSLGGVAGLSEEEEVLLRFSMKEAVYKAAHPLLRRSLVFKD 384
            +G   +S  PP  IL D +G P +PDG   SISHKR   VALV      + G  G     +GVDIE    RR  + R+VLT  E D LG + G++  EEVLLRFS+KE+VYKA HPLL + + F++
Sbjct:  121 IGPSSSSSFPP--ILRDGHGRPTVPDGFLGSISHKRVTGVALVSRDDDNKGGKRGRPRRGVGVDIEQTRSRRMSIERKVLTKGELDDLGKLEGVTRSEEVLLRFSLKESVYKALHPLLTQYIGFQE 244          
BLAST of mRNA_H-elongata_contig11229.1000.1 vs. uniprot
Match: A0A7S3PAQ3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PAQ3_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.790e-21
Identity = 60/133 (45.11%), Postives = 80/133 (60.15%), Query Frame = 1
Query:    1 FLGGRLAIRRAMVGMKEASLQPPSAILHDQYGAPVLPDGVAASISHKRHVAVALVQPGCEGH-----IGVDIELPAVRRRDLRRRVLTARECDSLGGVAGLSEEEEVLLRFSMKEAVYKAAHPLLRRSLVFKD 384
            F+GGRLA+R+AM    E  +     IL D +G P +P     SISHK  VAVA+V P          IGVD+E+    R  +  R+LT  E  +LG V G+  EEEVLLRFS+KEA+YKA HPL+ + + F++
Sbjct:   16 FVGGRLALRKAM----ECQMHD-CVILKDAHGRPNIPRSFRGSISHKGDVAVAMVAPATTERETVWAIGVDLEVRQKGRSRIGNRILTVSEQGNLGFVDGILAEEEVLLRFSLKEALYKAMHPLICQYVGFQE 143          
BLAST of mRNA_H-elongata_contig11229.1000.1 vs. uniprot
Match: A0A7S1GJ90_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GJ90_CYCTE)

HSP 1 Score: 97.1 bits (240), Expect = 2.860e-21
Identity = 62/137 (45.26%), Postives = 89/137 (64.96%), Query Frame = 1
Query:    1 FLGGRLAIRRAMVGMKEASLQPPSAILHDQYGAPVLPDGVAASISHKRHVAVALV---------QPGCEGHIGVDIELPAVRRRDLRRRVLTARECDSLGGVAGLSEEEEVLLRFSMKEAVYKAAHPLLRRSLVFKD 384
            F  GRLA+R A+  +++ S    ++IL DQ+G P++P G   SISHKR+V VALV             EG +G+DIE   + +RD+ ++VLT  E   LG V G++ EEEVLLRFSMKE++YKA HP+L + + F++
Sbjct:  159 FFVGRLAMREAL-RLEQNSAH--ASILKDQHGRPIVPRGYLGSISHKRNVGVALVTTTSTTSDESETVEG-VGIDIE-QTLTKRDIAKKVLTPTEISELGKVEGVTIEEEVLLRFSMKESLYKAMHPILCQYVGFQE 290          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11229.1000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQQ5_ECTSI1.760e-5777.104'-phosphopantetheinyl transferase n=1 Tax=Ectocar... [more]
A0A7S2SQZ6_9STRA3.330e-2554.01Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9CTH4_9STRA1.050e-2447.10Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TPT1_9STRA3.500e-2447.104-phosphopantetheinyl transferase entd n=1 Tax=Nan... [more]
A0A7S4T7K3_9STRA4.620e-2444.53Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A838HLQ8_9BACT5.610e-2345.384'-phosphopantetheinyl transferase superfamily pro... [more]
A0A7S2P1V1_9STRA4.670e-2247.32Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2A1R9_TRICV1.770e-2146.83Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S3PAQ3_9STRA2.790e-2145.11Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A7S1GJ90_CYCTE2.860e-2145.26Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11229contigH-elongata_contig11229:1426..2238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.1
Seed ortholog evalue4.1e-47
Seed eggNOG ortholog2880.D7FQQ5
EggNOG free text desc.4'-phosphopantetheinyl transferase superfamily
EggNOG OGs2EAJI@1,2SGT3@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog description4'-phosphopantetheinyl transferase superfamily
Ec32 orthologEc-01_000130.1
Exons2
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929644.6714995-CDS-H-elongata_contig11229:1425..16151622929644.6714995-CDS-H-elongata_contig11229:1425..1615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11229 1426..1615 +
1691679103.4671588-CDS-H-elongata_contig11229:1425..16151691679103.4671588-CDS-H-elongata_contig11229:1425..1615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11229 1426..1615 +
1622929644.687953-CDS-H-elongata_contig11229:2023..22381622929644.687953-CDS-H-elongata_contig11229:2023..2238Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11229 2024..2238 +
1691679103.4860477-CDS-H-elongata_contig11229:2023..22381691679103.4860477-CDS-H-elongata_contig11229:2023..2238Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11229 2024..2238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11229.1000.1prot_H-elongata_contig11229.1000.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11229 1426..2238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11229.1000.1

>prot_H-elongata_contig11229.1000.1 ID=prot_H-elongata_contig11229.1000.1|Name=mRNA_H-elongata_contig11229.1000.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
FLGGRLAIRRAMVGMKEASLQPPSAILHDQYGAPVLPDGVAASISHKRHV
AVALVQPGCEGHIGVDIELPAVRRRDLRRRVLTARECDSLGGVAGLSEEE
EVLLRFSMKEAVYKAAHPLLRRSLVFKDVSTLLFA
back to top

mRNA from alignment at H-elongata_contig11229:1426..2238+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11229.1000.1 ID=mRNA_H-elongata_contig11229.1000.1|Name=mRNA_H-elongata_contig11229.1000.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=813bp|location=Sequence derived from alignment at H-elongata_contig11229:1426..2238+ (Himanthalia elongata Himel1 dioecious)
TTTCTGGGAGGGAGATTAGCGATCAGGCGGGCGATGGTTGGTATGAAGGA AGCTTCATTGCAGCCGCCGTCCGCTATCCTGCATGACCAATATGGCGCCC CCGTCCTGCCGGATGGCGTGGCTGCTTCCATCAGCCACAAGCGTCATGTA GCCGTTGCTCTCGTCCAACCTGGCTGCGAAGGACACATCGGTGCGAATGT ATTAGGCTCGCAACTAAAGTAGTTCGTGACTTAGTTGAGCCGAGTGATCT CTCAGTGATGTGGAGACCAACCCATGGGAGTTGAGAGCGATATATTGCCC AATCAGTTATTTCGTCCAGTGTGCACCACCCTCGGCAGATATGAAGTACG GAGTTTGTTTGCTGATTGCCTAGCTGCGACGAAAGCTGCTTGTTAACGTG AACGAATCTAACCGGTAACGTACTCATTTGGGATGCAGTATACCAGTATG GATTCATATACATTTATACATATATATATATATGGCAGAACAGACTGCGG CAATCGATTTACCGCTTCAAGCAACGTGTACGTATATTCGGTAACTCTCA CAAGCTCAACGATCCCACATGACCCCACCCCTTCTCGCGTGTGTCCAGGC GTGGATATCGAGCTGCCAGCTGTTCGAAGGCGTGACCTCCGTCGTCGAGT GCTCACTGCTCGGGAGTGCGATTCCTTGGGAGGCGTTGCAGGGTTATCCG AAGAAGAGGAAGTGCTGCTAAGGTTTTCGATGAAAGAAGCCGTCTACAAG GCAGCGCACCCGCTGCTTCGTCGGTCACTCGTTTTCAAGGATGTGAGTAC CTTGCTTTTTGCA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig11229:1426..2238+

>mRNA_H-elongata_contig11229.1000.1 ID=mRNA_H-elongata_contig11229.1000.1|Name=mRNA_H-elongata_contig11229.1000.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig11229:1426..2238+ (Himanthalia elongata Himel1 dioecious)
TTTCTGGGAGGGAGATTAGCGATCAGGCGGGCGATGGTTGGTATGAAGGA
AGCTTCATTGCAGCCGCCGTCCGCTATCCTGCATGACCAATATGGCGCCC
CCGTCCTGCCGGATGGCGTGGCTGCTTCCATCAGCCACAAGCGTCATGTA
GCCGTTGCTCTCGTCCAACCTGGCTGCGAAGGACACATCGTTTCTGGGAG
GGAGATTAGCGATCAGGCGGGCGATGGTTGGTATGAAGGAAGCTTCATTG
CAGCCGCCGTCCGCTATCCTGCATGACCAATATGGCGCCCCCGTCCTGCC
GGATGGCGTGGCTGCTTCCATCAGCCACAAGCGTCATGTAGCCGTTGCTC
TCGTCCAACCTGGCTGCGAAGGACACATCGGCGTGGATATCGAGCTGCCA
GCTGTTCGAAGGCGTGACCTCCGTCGTCGAGTGCTCACTGCTCGGGAGTG
CGATTCCTTGGGAGGCGTTGCAGGGTTATCCGAAGAAGAGGAAGTGCTGC
TAAGGTTTTCGATGAAAGAAGCCGTCTACAAGGCAGCGCACCCGCTGCTT
CGTCGGTCACTCGTTTTCAAGGATGTGAGTACCTTGCTTTTTGCAGCGTG
GATATCGAGCTGCCAGCTGTTCGAAGGCGTGACCTCCGTCGTCGAGTGCT
CACTGCTCGGGAGTGCGATTCCTTGGGAGGCGTTGCAGGGTTATCCGAAG
AAGAGGAAGTGCTGCTAAGGTTTTCGATGAAAGAAGCCGTCTACAAGGCA
GCGCACCCGCTGCTTCGTCGGTCACTCGTTTTCAAGGATGTGAGTACCTT
GCTTTTTGCA
back to top