mRNA_H-elongata_contig112275.999.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112275.999.1
Unique NamemRNA_H-elongata_contig112275.999.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig112275.999.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 5.600e-8
Identity = 41/127 (32.28%), Postives = 66/127 (51.97%), Query Frame = 1 
Query:    1 GAEDTYISQATFLMKELMGIMNSECLQIRV--------PDKPGMDPVPYKQVNKS-------------ELFPEVKTAVEVYREVMKKNNLGRVLNPTERISVFLDPRRKMMLEDDCISGGNALQTMA 318
            GA DT++SQATF++ E++ ++ ++   IRV        P   G+ P   +  N+S             +L  E +  V+V  EVM +  +G+ L   ER+SV LDPRRK + +    +G + L+T A
Sbjct:  332 GATDTHLSQATFIINEVIDMLTTDYHPIRVESAIVTPPPPAAGIIPTEGEGQNESSLDGISTAETQVTDLTLEAQDVVQVLLEVMDEKGVGKALQWVERLSVLLDPRRKTLDDTHLRNGSSDLKTQA 458
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BLAST of mRNA_H-elongata_contig112275.999.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 2.590e-7
Identity = 36/108 (33.33%), Postives = 56/108 (51.85%), Query Frame = 1 
Query:    1 GAEDTYISQATFLMKELMGIMNSECLQIRV------PDKPGMDPVPYKQ--------------VNKSELFPEVKTAVEVYREVMKKNNLGRVLNPTERISVFLDPRRK 264
            GA+DT+ISQA FL+ E+M ++  E   IR       P  P +D +P ++              ++  +L  E +   +V  EVM++  +G+ L   ER+S  LDPRRK
Sbjct:  186 GAQDTHISQAMFLIHEVMEMLKDETHPIRTANAIVTPPPPALDVIPTEEEENQPQKGGVSTEDIHVEDLTTEAQGVRKVLLEVMEEKGVGKALQRVERLSALLDPRRK 293
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BLAST of mRNA_H-elongata_contig112275.999.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.530e-5
Identity = 29/90 (32.22%), Postives = 53/90 (58.89%), Query Frame = 1 
Query:    1 GAEDTYISQATFLMKELMGIMNSECLQIRVPDKPGMDPVPYKQVNKSELFPEVKTAVEVYREVMKKNNLGRVLNPTERISVFLDPRRKMM 270
            GA+DT+ISQA F++ E+M ++  +   IR  +    +P   +++   EL    +  +EV  +VM++  +G+ +   ER+S  +DPRRK +
Sbjct:  516 GAKDTHISQAMFIIHEVMEMLREDSHPIRAQN--ATEP---EEMQVLELSSAAQGVLEVLLDVMEEKQVGKAVQQVERLSALMDPRRKSL 600
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112275.999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JZU3_9PHAE5.600e-832.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ6_9PHAE2.590e-733.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE1.530e-532.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112275contigH-elongata_contig112275:721..1074 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929644.5779703-CDS-H-elongata_contig112275:720..10741622929644.5779703-CDS-H-elongata_contig112275:720..1074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112275 721..1074 -
1691679103.4474707-CDS-H-elongata_contig112275:720..10741691679103.4474707-CDS-H-elongata_contig112275:720..1074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112275 721..1074 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112275.999.1prot_H-elongata_contig112275.999.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112275 721..1074 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112275.999.1

>prot_H-elongata_contig112275.999.1 ID=prot_H-elongata_contig112275.999.1|Name=mRNA_H-elongata_contig112275.999.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
GAEDTYISQATFLMKELMGIMNSECLQIRVPDKPGMDPVPYKQVNKSELF
PEVKTAVEVYREVMKKNNLGRVLNPTERISVFLDPRRKMMLEDDCISGGN
ALQTMAFRTSKSSDIPSS
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mRNA from alignment at H-elongata_contig112275:721..1074-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112275.999.1 ID=mRNA_H-elongata_contig112275.999.1|Name=mRNA_H-elongata_contig112275.999.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=354bp|location=Sequence derived from alignment at H-elongata_contig112275:721..1074- (Himanthalia elongata Himel1 dioecious)
GGAGCTGAAGACACGTACATTAGCCAGGCGACCTTCCTTATGAAGGAGCT
GATGGGCATCATGAACTCTGAGTGTCTTCAGATCCGGGTTCCAGACAAGC
CAGGCATGGATCCTGTACCATACAAACAAGTAAACAAATCTGAGCTTTTT
CCGGAGGTCAAAACGGCGGTCGAGGTGTATAGAGAAGTAATGAAGAAAAA
TAACCTGGGTAGGGTTTTGAACCCAACTGAGCGCATCAGCGTCTTTCTCG
ATCCGAGAAGGAAAATGATGCTCGAGGACGATTGCATTAGCGGTGGTAAT
GCGCTTCAGACGATGGCATTTCGGACGTCGAAGAGCTCGGACATCCCTTC
CTCG
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Coding sequence (CDS) from alignment at H-elongata_contig112275:721..1074-

>mRNA_H-elongata_contig112275.999.1 ID=mRNA_H-elongata_contig112275.999.1|Name=mRNA_H-elongata_contig112275.999.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig112275:721..1074- (Himanthalia elongata Himel1 dioecious)
GGAGCTGAAGACACGTACATTAGCCAGGCGACCTTCCTTATGAAGGAGCT
GATGGGCATCATGAACTCTGAGTGTCTTCAGATCCGGGTTCCAGACAAGC
CAGGCATGGATCCTGTACCATACAAACAAGTAAACAAATCTGAGCTTTTT
CCGGAGGTCAAAACGGCGGTCGAGGTGTATAGAGAAGTAATGAAGAAAAA
TAACCTGGGTAGGGTTTTGAACCCAACTGAGCGCATCAGCGTCTTTCTCG
ATCCGAGAAGGAAAATGATGCTCGAGGACGATTGCATTAGCGGTGGTAAT
GCGCTTCAGACGATGGCATTTCGGACGTCGAAGAGCTCGGACATCCCTTC
CTCGGGAGCTGAAGACACGTACATTAGCCAGGCGACCTTCCTTATGAAGG
AGCTGATGGGCATCATGAACTCTGAGTGTCTTCAGATCCGGGTTCCAGAC
AAGCCAGGCATGGATCCTGTACCATACAAACAAGTAAACAAATCTGAGCT
TTTTCCGGAGGTCAAAACGGCGGTCGAGGTGTATAGAGAAGTAATGAAGA
AAAATAACCTGGGTAGGGTTTTGAACCCAACTGAGCGCATCAGCGTCTTT
CTCGATCCGAGAAGGAAAATGATGCTCGAGGACGATTGCATTAGCGGTGG
TAATGCGCTTCAGACGATGGCATTTCGGACGTCGAAGAGCTCGGACATCC
CTTCCTCG
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