mRNA_H-elongata_contig112272.998.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112272.998.1
Unique NamemRNA_H-elongata_contig112272.998.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig112272.998.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 4.800e-29
Identity = 59/120 (49.17%), Postives = 80/120 (66.67%), Query Frame = 1 
Query:    7 LYSFVLDLSADGYGSKEIAMNA--VANDQVWHRRLGHLHAQSLDILRKRYGTGITFEGGVSDCGVCAVGKAQQLAHPKTANHNVNRSFQLCYGDLMGPFTPVAIGGYKYISKITDKYTKW 360
            LY F +DL   G    EI+  A  V +  +WHRR+GH+H +SLDILRK  G G+ + G +S C VCAVG ++Q  HPK A+++ +R FQL   DLMGPF+P A+GG+ YI K  D++ KW
Sbjct:  243 LYHFTMDLPETG----EISGVALPVKSAALWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKW 358
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BLAST of mRNA_H-elongata_contig112272.998.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 6.280e-27
Identity = 49/96 (51.04%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:   73 VANDQVWHRRLGHLHAQSLDILRKRYGTGITFEGGVSDCGVCAVGKAQQLAHPKTANHNVNRSFQLCYGDLMGPFTPVAIGGYKYISKITDKYTKW 360
            V +  +WHRR+GH++++SLDILRK    G+     V DCG CA+GK+ Q  HPK A ++V R FQL + D +GPFTP A+GG+KY +K  D+ TKW
Sbjct:  523 VESANLWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKW 618
[Close]
BLAST of mRNA_H-elongata_contig112272.998.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.000e-26
Identity = 46/96 (47.92%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:   73 VANDQVWHRRLGHLHAQSLDILRKRYGTGITFEGGVSDCGVCAVGKAQQLAHPKTANHNVNRSFQLCYGDLMGPFTPVAIGGYKYISKITDKYTKW 360
            V    +WHRR+GH++ +SLD+LR++  +GI + G V DC  C +GK+ Q  HPK A + V+  FQL + D +GPFTP A+GG+KY +K  D++TKW
Sbjct:   41 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKW 136
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BLAST of mRNA_H-elongata_contig112272.998.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.040e-26
Identity = 46/96 (47.92%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:   73 VANDQVWHRRLGHLHAQSLDILRKRYGTGITFEGGVSDCGVCAVGKAQQLAHPKTANHNVNRSFQLCYGDLMGPFTPVAIGGYKYISKITDKYTKW 360
            V    +WHRR+GH++ +SLD+LR++  +GI + G V DC  C +GK+ Q  HPK A + V+  FQL + D +GPFTP A+GG+KY +K  D++TKW
Sbjct:  570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKW 665
[Close]
BLAST of mRNA_H-elongata_contig112272.998.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.110e-26
Identity = 46/96 (47.92%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:   73 VANDQVWHRRLGHLHAQSLDILRKRYGTGITFEGGVSDCGVCAVGKAQQLAHPKTANHNVNRSFQLCYGDLMGPFTPVAIGGYKYISKITDKYTKW 360
            V    +WHRR+GH++ +SLD+LR++  +GI + G V DC  C +GK+ Q  HPK A + V+  FQL + D +GPFTP A+GG+KY +K  D++TKW
Sbjct:  692 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKW 787
[Close]
BLAST of mRNA_H-elongata_contig112272.998.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.120e-26
Identity = 46/96 (47.92%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:   73 VANDQVWHRRLGHLHAQSLDILRKRYGTGITFEGGVSDCGVCAVGKAQQLAHPKTANHNVNRSFQLCYGDLMGPFTPVAIGGYKYISKITDKYTKW 360
            V    +WHRR+GH++ +SLD+LR++  +GI + G V DC  C +GK+ Q  HPK A + V+  FQL + D +GPFTP A+GG+KY +K  D++TKW
Sbjct:  570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKW 665
[Close]
BLAST of mRNA_H-elongata_contig112272.998.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.640e-24
Identity = 46/96 (47.92%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:   73 VANDQVWHRRLGHLHAQSLDILRKRYGTGITFEGGVSDCGVCAVGKAQQLAHPKTANHNVNRSFQLCYGDLMGPFTPVAIGGYKYISKITDKYTKW 360
            V +  +WHRR+GH++ +SLD+LRK    G+ + G V+DC VC +GK+ Q  HPK   + V R FQ    D +GPFTP A+GG+KY +K  D+ TKW
Sbjct:  283 VESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKW 378
[Close]
BLAST of mRNA_H-elongata_contig112272.998.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 3.260e-22
Identity = 49/104 (47.12%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:   49 SKEIAMNAVANDQVWHRRLGHLHAQSLDILRKRYGTGITFEGGVSDCGVCAVGKAQQLAHPKTANHNVNRSFQLCYGDLMGPFTPVAIGGYKYISKITDKYTKW 360
            S  +AM A + D +WHRRLGH+ ++SLD+LRK    G+ + G +  C VCA+GK+ Q  HPK A ++V+R FQ+   DLMGP +P A  G++Y+SK     TKW
Sbjct:   27 SPNMAMRAESAD-LWHRRLGHIDSRSLDVLRKIDDNGVDYTGPMETCDVCAIGKSSQRPHPKKATYDVSRHFQVST-DLMGPISPPARRGFRYVSKFVHGNTKW 128
[Close]
BLAST of mRNA_H-elongata_contig112272.998.1 vs. uniprot
Match: A0A6H5KP59_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP59_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.970e-21
Identity = 50/108 (46.30%), Postives = 65/108 (60.19%), Query Frame = 1 
Query:   43 YGSKEIAMNAVANDQVWHRRLGHLHAQSLDILRKRYGTGITFEGGVSDCGVCAVGKAQQLAHPKTANHNVNRSFQLCYGDLMGPFTPVAI---GGYKYISKITDKYTK 357
            Y +  +    V+ D  WHRRLGHL+A+SL+ILRK  GTG+ +   +S CGVC +GK +Q  HPK +   ++R  QL   D MGP  P A    G + Y  KITD YTK
Sbjct:  294 YTANAVCFTLVSAD-TWHRRLGHLNARSLEILRKDTGTGVDYRDSLSPCGVCQIGKHKQSPHPKQSTRELSRPGQLVVIDSMGPVNPPAYYKGGSFPYACKITDDYTK 400
[Close]
BLAST of mRNA_H-elongata_contig112272.998.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 3.170e-21
Identity = 47/92 (51.09%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:   91 WHRRLGHLHAQSLDILRKRYGTGITFEGGVSDCGVCAVGKAQQLAHPKTANHNVNRSFQLCYGDLMGPFTPVAI---GGYKYISKITDKYTK 357
            WHRRLGHL+A+SLDILRK  GTG+ +   +S CGVC + K +Q  HPK +   ++R  QL   D MGP  P A    G + Y  KITD YTK
Sbjct:   45 WHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTK 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112272.998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE4.800e-2949.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBV6_9PHAE6.280e-2751.04Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KNH5_9PHAE4.000e-2647.92Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJN3_9PHAE4.040e-2647.92Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE4.110e-2647.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE4.120e-2647.92Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KXM1_9PHAE1.640e-2447.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBU1_9PHAE3.260e-2247.12CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KP59_9PHAE1.970e-2146.30CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KZ34_9PHAE3.170e-2151.09Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112272contigH-elongata_contig112272:1779..2141 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score62.8
Seed ortholog evalue1.3e-07
Seed eggNOG ortholog6334.EFV57947
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929644.5244458-CDS-H-elongata_contig112272:1778..21411622929644.5244458-CDS-H-elongata_contig112272:1778..2141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112272 1779..2141 +
1691679103.435988-CDS-H-elongata_contig112272:1778..21411691679103.435988-CDS-H-elongata_contig112272:1778..2141Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112272 1779..2141 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112272.998.1prot_H-elongata_contig112272.998.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112272 1779..2141 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112272.998.1

>prot_H-elongata_contig112272.998.1 ID=prot_H-elongata_contig112272.998.1|Name=mRNA_H-elongata_contig112272.998.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
GNLYSFVLDLSADGYGSKEIAMNAVANDQVWHRRLGHLHAQSLDILRKRY
GTGITFEGGVSDCGVCAVGKAQQLAHPKTANHNVNRSFQLCYGDLMGPFT
PVAIGGYKYISKITDKYTKWT
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mRNA from alignment at H-elongata_contig112272:1779..2141+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112272.998.1 ID=mRNA_H-elongata_contig112272.998.1|Name=mRNA_H-elongata_contig112272.998.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=363bp|location=Sequence derived from alignment at H-elongata_contig112272:1779..2141+ (Himanthalia elongata Himel1 dioecious)
GGCAACCTCTACTCCTTCGTGCTGGACTTGAGTGCGGACGGATATGGCTC
CAAGGAGATAGCAATGAACGCAGTCGCAAATGACCAGGTGTGGCACCGAC
GGCTGGGTCATCTCCATGCGCAGAGCCTGGACATTCTACGCAAGCGATAC
GGCACTGGCATCACCTTCGAGGGGGGCGTCTCGGACTGCGGCGTTTGCGC
CGTGGGGAAGGCTCAACAGCTTGCTCATCCCAAGACAGCCAATCACAACG
TCAACCGGTCTTTCCAGCTGTGCTATGGAGACCTGATGGGGCCCTTCACG
CCTGTGGCCATAGGCGGCTACAAGTACATCAGCAAAATAACCGATAAGTA
CACAAAGTGGACG
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Coding sequence (CDS) from alignment at H-elongata_contig112272:1779..2141+

>mRNA_H-elongata_contig112272.998.1 ID=mRNA_H-elongata_contig112272.998.1|Name=mRNA_H-elongata_contig112272.998.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig112272:1779..2141+ (Himanthalia elongata Himel1 dioecious)
GGCAACCTCTACTCCTTCGTGCTGGACTTGAGTGCGGACGGATATGGCTC
CAAGGAGATAGCAATGAACGCAGTCGCAAATGACCAGGTGTGGCACCGAC
GGCTGGGTCATCTCCATGCGCAGAGCCTGGACATTCTACGCAAGCGATAC
GGCACTGGCATCACCTTCGAGGGGGGCGTCTCGGACTGCGGCGTTTGCGC
CGTGGGGAAGGCTCAACAGCTTGCTCATCCCAAGACAGCCAATCACAACG
TCAACCGGTCTTTCCAGCTGTGCTATGGAGACCTGATGGGGCCCTTCACG
CCTGTGGCCATAGGCGGCTACAAGTACATCAGCAAAATAACCGATAAGTA
CACAAAGTGGACGGGCAACCTCTACTCCTTCGTGCTGGACTTGAGTGCGG
ACGGATATGGCTCCAAGGAGATAGCAATGAACGCAGTCGCAAATGACCAG
GTGTGGCACCGACGGCTGGGTCATCTCCATGCGCAGAGCCTGGACATTCT
ACGCAAGCGATACGGCACTGGCATCACCTTCGAGGGGGGCGTCTCGGACT
GCGGCGTTTGCGCCGTGGGGAAGGCTCAACAGCTTGCTCATCCCAAGACA
GCCAATCACAACGTCAACCGGTCTTTCCAGCTGTGCTATGGAGACCTGAT
GGGGCCCTTCACGCCTGTGGCCATAGGCGGCTACAAGTACATCAGCAAAA
TAACCGATAAGTACACAAAGTGGACG
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