mRNA_H-elongata_contig112142.990.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112142.990.1
Unique NamemRNA_H-elongata_contig112142.990.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112142.990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112142contigH-elongata_contig112142:1158..1644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size488
Cds size486
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929643.6537971-CDS-H-elongata_contig112142:1157..16431622929643.6537971-CDS-H-elongata_contig112142:1157..1643Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112142 1158..1643 +
1691679103.1999106-CDS-H-elongata_contig112142:1157..16431691679103.1999106-CDS-H-elongata_contig112142:1157..1643Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112142 1158..1643 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112142.990.1prot_H-elongata_contig112142.990.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112142 1158..1643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112142.990.1

>prot_H-elongata_contig112142.990.1 ID=prot_H-elongata_contig112142.990.1|Name=mRNA_H-elongata_contig112142.990.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp
GEAGSALLAASSTASALPSPEAVEEATGLLPGQCETAGSGSGAGADVRAG
QSFLDVKAEAEAEDGGGDAGATAADDDDVMSEDVKATTGARIVSGDVDDV
TVIADATVCADVDATAAADNDVDGVDDDGPDGGLPDGRRPAYDLSKSTEE
NHRADHGRFTDR
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mRNA from alignment at H-elongata_contig112142:1158..1644+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112142.990.1 ID=mRNA_H-elongata_contig112142.990.1|Name=mRNA_H-elongata_contig112142.990.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=487bp|location=Sequence derived from alignment at H-elongata_contig112142:1158..1644+ (Himanthalia elongata Himel1 dioecious)
GGCGAAGCTGGATCGGCATTATTAGCGGCATCATCAACAGCATCAGCGTT
GCCATCACCCGAAGCTGTAGAGGAAGCGACCGGCCTATTGCCTGGCCAAT
GCGAAACAGCGGGATCTGGTTCTGGGGCGGGGGCTGACGTTAGAGCTGGC
CAGTCCTTTCTTGATGTAAAGGCGGAAGCGGAAGCGGAAGACGGCGGTGG
GGATGCTGGTGCCACTGCTGCTGATGATGATGATGTCATGTCCGAAGACG
TCAAGGCGACCACCGGTGCTCGTATCGTGTCCGGAGACGTTGATGATGTC
ACTGTTATTGCCGATGCCACTGTATGTGCAGATGTTGATGCCACTGCTGC
TGCTGATAATGATGTTGATGGTGTTGACGATGATGGGCCTGATGGTGGTC
TCCCCGATGGCCGACGCCCTGCGTACGACTTGAGCAAGAGCACGGAGGAG
AACCACCGGGCAGATCACGGGAGGTTTACGGACAGGT
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Coding sequence (CDS) from alignment at H-elongata_contig112142:1158..1644+

>mRNA_H-elongata_contig112142.990.1 ID=mRNA_H-elongata_contig112142.990.1|Name=mRNA_H-elongata_contig112142.990.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig112142:1158..1644+ (Himanthalia elongata Himel1 dioecious)
GGCGAAGCTGGATCGGCATTATTAGCGGCATCATCAACAGCATCAGCGTT
GCCATCACCCGAAGCTGTAGAGGAAGCGACCGGCCTATTGCCTGGCCAAT
GCGAAACAGCGGGATCTGGTTCTGGGGCGGGGGCTGACGTTAGAGCTGGC
CAGTCCTTTCTTGATGTAAAGGCGGAAGCGGAAGCGGAAGACGGCGGTGG
GGATGCTGGTGCCACTGCTGCTGATGATGATGATGTCATGTCCGAAGACG
TCAAGGCGACCACCGGTGCTCGTATCGTGTCCGGAGACGTTGATGATGTC
ACTGTTATTGCCGATGCCACTGTATGTGCAGATGTTGATGCCACTGCTGC
TGCTGATAATGATGTTGATGGTGTTGACGATGATGGGCCTGATGGTGGTC
TCCCCGATGGCCGACGCCCTGCGTACGACTTGAGCAAGAGCACGGAGGAG
AACCACCGGGCAGATCACGGGAGGTTTACGGACAGGGGCGAAGCTGGATC
GGCATTATTAGCGGCATCATCAACAGCATCAGCGTTGCCATCACCCGAAG
CTGTAGAGGAAGCGACCGGCCTATTGCCTGGCCAATGCGAAACAGCGGGA
TCTGGTTCTGGGGCGGGGGCTGACGTTAGAGCTGGCCAGTCCTTTCTTGA
TGTAAAGGCGGAAGCGGAAGCGGAAGACGGCGGTGGGGATGCTGGTGCCA
CTGCTGCTGATGATGATGATGTCATGTCCGAAGACGTCAAGGCGACCACC
GGTGCTCGTATCGTGTCCGGAGACGTTGATGATGTCACTGTTATTGCCGA
TGCCACTGTATGTGCAGATGTTGATGCCACTGCTGCTGCTGATAATGATG
TTGATGGTGTTGACGATGATGGGCCTGATGGTGGTCTCCCCGATGGCCGA
CGCCCTGCGTACGACTTGAGCAAGAGCACGGAGGAGAACCACCGGGCAGA
TCACGGGAGGTTTACGGACAGG
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