mRNA_H-elongata_contig112142.989.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112142.989.1
Unique NamemRNA_H-elongata_contig112142.989.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112142.989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112142contigH-elongata_contig112142:775..1133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size359
Cds size330
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929643.5858579-UTR-H-elongata_contig112142:774..8031622929643.5858579-UTR-H-elongata_contig112142:774..803Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112142 775..803 +
1691679103.1797187-UTR-H-elongata_contig112142:774..8031691679103.1797187-UTR-H-elongata_contig112142:774..803Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig112142 775..803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929643.6070395-CDS-H-elongata_contig112142:803..11331622929643.6070395-CDS-H-elongata_contig112142:803..1133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112142 804..1133 +
1691679103.188667-CDS-H-elongata_contig112142:803..11331691679103.188667-CDS-H-elongata_contig112142:803..1133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112142 804..1133 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112142.989.1prot_H-elongata_contig112142.989.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112142 804..1133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112142.989.1

>prot_H-elongata_contig112142.989.1 ID=prot_H-elongata_contig112142.989.1|Name=mRNA_H-elongata_contig112142.989.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
MSRLSGLWRASLAMQVIAARSSQSEIAEERLLADRHALLLLQSQSQSRSQ
PLSQPQPQPQSLSQSEGDGHDHGHGDGCLSVSLNGNSNHGADGNRARKNV
RLGQEKKEVE
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mRNA from alignment at H-elongata_contig112142:775..1133+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112142.989.1 ID=mRNA_H-elongata_contig112142.989.1|Name=mRNA_H-elongata_contig112142.989.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=359bp|location=Sequence derived from alignment at H-elongata_contig112142:775..1133+ (Himanthalia elongata Himel1 dioecious)
AGCGCCGCGTGACCTCTCGACGCCACCATATGTCAAGGCTCTCGGGGCTG
TGGAGGGCTAGCCTCGCGATGCAGGTCATCGCGGCGCGATCCAGTCAATC
CGAGATTGCGGAGGAGCGTCTTCTGGCCGACCGGCACGCCCTGCTCCTCC
TGCAGAGCCAGAGCCAGAGCCGGTCTCAACCTCTATCTCAACCTCAACCT
CAACCTCAATCCCTCTCTCAGTCTGAGGGTGATGGTCACGACCATGGTCA
TGGCGATGGATGCCTATCAGTGTCGTTGAACGGGAACAGTAACCATGGCG
CTGACGGCAACCGCGCCAGGAAGAACGTTCGCCTTGGCCAGGAGAAGAAG
GAGGTGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig112142:775..1133+

>mRNA_H-elongata_contig112142.989.1 ID=mRNA_H-elongata_contig112142.989.1|Name=mRNA_H-elongata_contig112142.989.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig112142:775..1133+ (Himanthalia elongata Himel1 dioecious)
ATGTCAAGGCTCTCGGGGCTGTGGAGGGCTAGCCTCGCGATGCAGGTCAT
CGCGGCGCGATCCAGTCAATCCGAGATTGCGGAGGAGCGTCTTCTGGCCG
ACCGGCACGCCCTGCTCCTCCTGCAGAGCCAGAGCCAGAGCCGGTCTCAA
CCTCTATCTCAACCTCAACCTCAACCTCAATCCCTCTCTCAGTCTGAGGG
TGATGGTCACGACCATGGTCATGGCGATGGATGCCTATCAGTGTCGTTGA
ACGGGAACAGTAACCATGGCGCTGACGGCAACCGCGCCAGGAAGAACGTT
CGCCTTGGCCAGGAGAAGAAGGAGGTGGAGATGTCAAGGCTCTCGGGGCT
GTGGAGGGCTAGCCTCGCGATGCAGGTCATCGCGGCGCGATCCAGTCAAT
CCGAGATTGCGGAGGAGCGTCTTCTGGCCGACCGGCACGCCCTGCTCCTC
CTGCAGAGCCAGAGCCAGAGCCGGTCTCAACCTCTATCTCAACCTCAACC
TCAACCTCAATCCCTCTCTCAGTCTGAGGGTGATGGTCACGACCATGGTC
ATGGCGATGGATGCCTATCAGTGTCGTTGAACGGGAACAGTAACCATGGC
GCTGACGGCAACCGCGCCAGGAAGAACGTTCGCCTTGGCCAGGAGAAGAA
GGAGGTGGAG
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