mRNA_H-elongata_contig112083.981.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112083.981.1
Unique NamemRNA_H-elongata_contig112083.981.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig112083.981.1 vs. uniprot
Match: D7G642_ECTSI (DUF1995 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G642_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 1.520e-74
Identity = 114/165 (69.09%), Postives = 137/165 (83.03%), Query Frame = 1 
Query:    1 SLCFFHQLVNALARSRKVYVTCCEPGAKVILGKDLK--ADVRNLSSNDLPPAKMGDIQVVITPADQGQWKLAKTMSEAAPVVIVNGVFVNGYVPFEPVYYFKPISGFSSVVGSVVRQYPGTFTAYLAGSNKVVPCEAGLIRQGDVRRPDLRSAANALMAAYQEQQ 489
            +L F  +LV A+ +S+K YV CC+PGAK   G  ++  ADVR++++ +LPPAK GD+ VV+TPADQGQWKLAK M+E   VVIVNGVFVNGYVPFEPVYYFKPISG+    GSVVRQYPG FTAYLA SNKVVPC+AGL++QGD+RRPDLRSAANAL AA++EQQ
Sbjct:  130 TLSFAKKLVGAIGKSKKAYVVCCQPGAKADFGIGVRGAADVRDINAKNLPPAKAGDVVVVVTPADQGQWKLAKKMAETTTVVIVNGVFVNGYVPFEPVYYFKPISGW----GSVVRQYPGPFTAYLANSNKVVPCDAGLVKQGDIRRPDLRSAANALSAAFREQQ 290
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BLAST of mRNA_H-elongata_contig112083.981.1 vs. uniprot
Match: A0A7S2XUE4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUE4_9STRA)

HSP 1 Score: 132 bits (333), Expect = 5.140e-35
Identity = 69/162 (42.59%), Postives = 96/162 (59.26%), Query Frame = 1 
Query:   10 FFHQLVNALARSR-KVYVTCCEPGAKVILGKDL-----KADVRNLSSNDLPPAKMGDIQVVITPADQGQWKLAKTMSEAAPVVIVNGVFVNGYVPFEPVYYFKPISGFSSVVGSVVRQYPGTFTAYLAGSNKVVPCEAGLIRQGDVRRPDLRSAANALMAAY 477
            F  +LV +L  SR KV+V CCEPG K +L + +     K +V  LSS +LP A   D+ + +TP D  QWK+A  + E APVV+VNG+F NGY   EPVYY KP SG+    G ++RQ+P  FT YL G  K +  +  ++  G++RRPD       L + +
Sbjct:  120 FAKKLVTSLTSSRSKVWVVCCEPGYKKMLEEAIGTQNKKVEVVPLSSRNLPDASPKDVLIFLTPGDDSQWKIAAKLGETAPVVVVNGLFNNGYGALEPVYYLKPFSGW----GYLMRQFPNDFTVYLTGEKKPLDLKVTMMEMGNLRRPDSTVVGKVLQSEF 277
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112083.981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G642_ECTSI1.520e-7469.09DUF1995 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A7S2XUE4_9STRA5.140e-3542.59Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112083contigH-elongata_contig112083:30..1229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score234.2
Seed ortholog evalue4.5e-59
Seed eggNOG ortholog2880.D7G642
EggNOG OGs2E7SF@1,2SEB9@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_005050.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size504
Cds size504
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112083.981.1prot_H-elongata_contig112083.981.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112083 30..1229 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929642.7669163-CDS-H-elongata_contig112083:29..2121622929642.7669163-CDS-H-elongata_contig112083:29..212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112083 30..212 +
1691679102.8726008-CDS-H-elongata_contig112083:29..2121691679102.8726008-CDS-H-elongata_contig112083:29..212Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112083 30..212 +
1622929642.780981-CDS-H-elongata_contig112083:479..6861622929642.780981-CDS-H-elongata_contig112083:479..686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112083 480..686 +
1691679102.8877723-CDS-H-elongata_contig112083:479..6861691679102.8877723-CDS-H-elongata_contig112083:479..686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112083 480..686 +
1622929642.7984014-CDS-H-elongata_contig112083:1115..12291622929642.7984014-CDS-H-elongata_contig112083:1115..1229Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112083 1116..1229 +
1691679102.8973827-CDS-H-elongata_contig112083:1115..12291691679102.8973827-CDS-H-elongata_contig112083:1115..1229Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112083 1116..1229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112083.981.1

>prot_H-elongata_contig112083.981.1 ID=prot_H-elongata_contig112083.981.1|Name=mRNA_H-elongata_contig112083.981.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=168bp
SLCFFHQLVNALARSRKVYVTCCEPGAKVILGKDLKADVRNLSSNDLPPA
KMGDIQVVITPADQGQWKLAKTMSEAAPVVIVNGVFVNGYVPFEPVYYFK
PISGFSSVVGSVVRQYPGTFTAYLAGSNKVVPCEAGLIRQGDVRRPDLRS
AANALMAAYQEQQASRG*
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mRNA from alignment at H-elongata_contig112083:30..1229+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112083.981.1 ID=mRNA_H-elongata_contig112083.981.1|Name=mRNA_H-elongata_contig112083.981.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1200bp|location=Sequence derived from alignment at H-elongata_contig112083:30..1229+ (Himanthalia elongata Himel1 dioecious)
TCCTTGTGTTTTTTTCATCAGCTGGTGAATGCGTTGGCGCGTTCGAGAAA
AGTTTACGTGACGTGCTGTGAGCCCGGCGCGAAGGTTATCCTCGGAAAGG
ACTTGAAGGCAGATGTGCGGAACTTGAGCTCGAACGATCTGCCGCCAGCC
AAGATGGGGGACATACAAGTGGTCATTACGCCGGTGCGTGGGTGCGTTTA
CGAGCCCGCCGTAGGCCATTAGCGTCGGTTGGCGCCTAGAAATGCTCGTG
GGGAAGGAAACCAATCGAAAACGGAACAAGTCGACTCCGTCGTGCTCGCC
GTTGTTTGCTCACAAATCGACTCTAATCCCTGATCGATCATGTAGGAAAA
ATGCTCCGTCCTTCCGAGGACGCGTGGTCAAAGGTCTGATAGCGAATAAA
CACGATGCGTGAGTACACCCCTTCCTTGCGCTGTATCCACGTCCTCGAAG
GCTGACCAGGGGCAGTGGAAACTAGCAAAAACGATGTCTGAGGCAGCGCC
TGTGGTTATCGTGAACGGCGTGTTCGTCAACGGATACGTCCCCTTCGAGC
CGGTGTACTACTTCAAGCCAATCTCCGGGTTTAGCTCGGTCGTGGGCTCC
GTTGTTCGGCAGTATCCGGGAACCTTCACAGCGTACCTGGCGGGCTCCAA
CAAAGTGGTGCGCGGCTTTATAGAGTCCGATGTCGCGTTGGGTATGACGG
GAGAAAATGGTAAAAATAAGGACATAATGGTACACGAGGATTCTTCTTCG
TCACACGAGCGTGGTGACCCTCAGGCAAAATATGGTTGTTGTATTACACC
GGACTGGATCTCCGGAGGAATACCCATTGGTGGACAGGGCCCTCGCATCC
GTCTATCTTCCTGACACTGTATACTGCGGTATCGTATAAAATTGATGCTA
TGAGATCAAATGTATAATTCGGGTTATCCCTAAACGCGCAGCATATATTG
GTTTTCCGACGTTGGTGGCGACGAAATCGTGGATATCCTCACCTCCAAGG
CTCCATCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCGCCCCTTG
TCACTGAGGGTATCACTCTATTGTCGTTTTTCGCAGGTTCCTTGCGAAGC
GGGTCTCATCAGACAAGGAGATGTAAGGAGGCCCGATCTTCGAAGCGCTG
CGAACGCACTAATGGCGGCTTATCAGGAACAACAGGCTTCCCGGGGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig112083:30..1229+

>mRNA_H-elongata_contig112083.981.1 ID=mRNA_H-elongata_contig112083.981.1|Name=mRNA_H-elongata_contig112083.981.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1008bp|location=Sequence derived from alignment at H-elongata_contig112083:30..1229+ (Himanthalia elongata Himel1 dioecious)
TCCTTGTGTTTTTTTCATCAGCTGGTGAATGCGTTGGCGCGTTCGAGAAA
AGTTTACGTGACGTGCTGTGAGCCCGGCGCGAAGGTTATCCTCGGAAAGG
ACTTGAAGGCAGATGTGCGGAACTTGAGCTCGAACGATCTGCCGCCAGCC
AAGATGGGGGACATACAAGTGGTCATTACGCCGTCCTTGTGTTTTTTTCA
TCAGCTGGTGAATGCGTTGGCGCGTTCGAGAAAAGTTTACGTGACGTGCT
GTGAGCCCGGCGCGAAGGTTATCCTCGGAAAGGACTTGAAGGCAGATGTG
CGGAACTTGAGCTCGAACGATCTGCCGCCAGCCAAGATGGGGGACATACA
AGTGGTCATTACGCCGGCTGACCAGGGGCAGTGGAAACTAGCAAAAACGA
TGTCTGAGGCAGCGCCTGTGGTTATCGTGAACGGCGTGTTCGTCAACGGA
TACGTCCCCTTCGAGCCGGTGTACTACTTCAAGCCAATCTCCGGGTTTAG
CTCGGTCGTGGGCTCCGTTGTTCGGCAGTATCCGGGAACCTTCACAGCGT
ACCTGGCGGGCTCCAACAAAGTGGCTGACCAGGGGCAGTGGAAACTAGCA
AAAACGATGTCTGAGGCAGCGCCTGTGGTTATCGTGAACGGCGTGTTCGT
CAACGGATACGTCCCCTTCGAGCCGGTGTACTACTTCAAGCCAATCTCCG
GGTTTAGCTCGGTCGTGGGCTCCGTTGTTCGGCAGTATCCGGGAACCTTC
ACAGCGTACCTGGCGGGCTCCAACAAAGTGGTTCCTTGCGAAGCGGGTCT
CATCAGACAAGGAGATGTAAGGAGGCCCGATCTTCGAAGCGCTGCGAACG
CACTAATGGCGGCTTATCAGGAACAACAGGCTTCCCGGGGGTAGGTTCCT
TGCGAAGCGGGTCTCATCAGACAAGGAGATGTAAGGAGGCCCGATCTTCG
AAGCGCTGCGAACGCACTAATGGCGGCTTATCAGGAACAACAGGCTTCCC
GGGGGTAG
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