mRNA_H-elongata_contig11206.979.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11206.979.1 vs. uniprot
Match: D8LF38_ECTSI (Divalent metal transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF38_ECTSI) HSP 1 Score: 300 bits (768), Expect = 7.130e-96 Identity = 158/199 (79.40%), Postives = 176/199 (88.44%), Query Frame = 1
Query: 1 LDTFTFLFIHVLGVRKLEALFVFLVSVMTVAFFVDFGISPPTASDVAEGFSFTLHSYALVTALGLIGAVIMPHNIYLHSALVLSRTFDRSNPKKLWEATKYYTIDSGIALTVAFLINLAVVCTFAKQFYDISCSTASTLSACFTGSSIDLSEPSYGTCD-EGAGVCQEIGLSAAADALKGTLGSAAKYVWAVGLLVRGR 594
LDTFTFLFIHV GVRKLEALFV LVS+MTVAFF+DF +SPP+ +DVAEGFSFT SYA V ALGLIGAVIMPHNIYLHSALVLSR DR+ P+KLWEATKYYTIDSGIAL VAF+INLAVVCTFAKQFYD +C+TAS SACF G SID ++PSYG+CD +G G+CQEIGLSAAA AL+GTLGS+AKYVWAVGLL G+
Sbjct: 212 LDTFTFLFIHVFGVRKLEALFVVLVSIMTVAFFIDFFMSPPSPADVAEGFSFTAESYATVPALGLIGAVIMPHNIYLHSALVLSRVVDRTRPRKLWEATKYYTIDSGIALMVAFMINLAVVCTFAKQFYDETCATASEPSACFVGDSIDPTQPSYGSCDADGTGLCQEIGLSAAAAALRGTLGSSAKYVWAVGLLAAGQ 410
BLAST of mRNA_H-elongata_contig11206.979.1 vs. uniprot
Match: A0A835YZC9_9STRA (Divalent metal transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZC9_9STRA) HSP 1 Score: 233 bits (595), Expect = 3.160e-70 Identity = 123/197 (62.44%), Postives = 147/197 (74.62%), Query Frame = 1
Query: 4 DTFTFLFIHVLGVRKLEALFVFLVSVMTVAFFVDFGISPPTASDVAEGFSFTLHSYALVTALGLIGAVIMPHNIYLHSALVLSRTFDRSNPKKLWEATKYYTIDSGIALTVAFLINLAVVCTFAKQFYDISCSTASTLSACFTGSSIDLSEPSYGTCDEGAGVCQEIGLSAAADALKGTLGSAAKYVWAVGLLVRGR 594
DTFTFLF+HV GVRKLE LFV LV+ MTV FF+++ PP A +V +GF + S+ VTALGL+GAVIMPHN+YLHSALVLSR R N +K+WEA KY TIDS +AL +AFLINLAVV TFA QFY + C +AC T SID P++GTC +G GVCQEIGL A DAL+G+LGS AKYVWA+GLL G+
Sbjct: 161 DTFTFLFMHVFGVRKLEGLFVVLVATMTVTFFINYASEPPAAIEVLKGFQPKITSHTSVTALGLLGAVIMPHNLYLHSALVLSRRIGRDNKRKVWEAVKYCTIDSALALGLAFLINLAVVGTFAVQFYSVDCINTRMPTACLTLGSIDRDSPTFGTCAKGLGVCQEIGLGHAGDALRGSLGSNAKYVWAIGLLAAGQ 357
BLAST of mRNA_H-elongata_contig11206.979.1 vs. uniprot
Match: A0A4D9D1G8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1G8_9STRA) HSP 1 Score: 199 bits (506), Expect = 4.460e-58 Identity = 114/198 (57.58%), Postives = 138/198 (69.70%), Query Frame = 1
Query: 1 LDTFTFLFIHVLGVRKLEALFVFLVSVMTVAFFVDFGISPPTASDVAEGFSFTLHSYALVTALGLIGAVIMPHNIYLHSALVLSRTFDRSNPKKLWEATKYYTIDSGIALTVAFLINLAVVCTFAKQFYDISCSTASTLSACFTGSSIDLSEPSYGTCDEGAGVCQEIGLSAAADALKGTLGSAAKYVWAVGLLVRGR 594
+DTFTFL IH GVRKLE++FV LV++MTV FF++FG SPP + D+AEGF + YA+++A+GLIGAVIMPHNIYLHSALVLSR DR P + EA KY+ IDS IALTV+F+INLAVV FA F+D C+TA G LS G CD CQ IGL+ A DAL LG +AKY+WAVGLL G+
Sbjct: 110 IDTFTFLGIHYFGVRKLESVFVLLVAIMTVCFFINFGKSPPPSRDIAEGFVPQIRPYAVLSAVGLIGAVIMPHNIYLHSALVLSRKVDRRRPAHVKEANKYFAIDSAIALTVSFVINLAVVSVFAYHFFDHGCATAP------GGPLACLSRTEEGVCD-----CQLIGLAGAHDALAEALGKSAKYIWAVGLLAAGQ 296
BLAST of mRNA_H-elongata_contig11206.979.1 vs. uniprot
Match: W7TP25_9STRA (2-isopropylmalate synthase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TP25_9STRA) HSP 1 Score: 199 bits (506), Expect = 1.570e-55 Identity = 114/198 (57.58%), Postives = 138/198 (69.70%), Query Frame = 1
Query: 1 LDTFTFLFIHVLGVRKLEALFVFLVSVMTVAFFVDFGISPPTASDVAEGFSFTLHSYALVTALGLIGAVIMPHNIYLHSALVLSRTFDRSNPKKLWEATKYYTIDSGIALTVAFLINLAVVCTFAKQFYDISCSTASTLSACFTGSSIDLSEPSYGTCDEGAGVCQEIGLSAAADALKGTLGSAAKYVWAVGLLVRGR 594
+DTFTFL IH GVRKLE++FV LV++MTV FF++FG SPP + D+AEGF + YA+++A+GLIGAVIMPHNIYLHSALVLSR DR P + EA KY+ IDS IALTV+F+INLAVV FA F+D C+TA G LS G CD CQ IGL+ A DAL LG +AKY+WAVGLL G+
Sbjct: 1017 IDTFTFLGIHYFGVRKLESVFVLLVAIMTVCFFINFGKSPPPSRDIAEGFVPQIRPYAVLSAVGLIGAVIMPHNIYLHSALVLSRKVDRRRPAHVKEANKYFAIDSAIALTVSFVINLAVVSVFAYHFFDHGCATAP------GGPLACLSRTEEGVCD-----CQLIGLAGAHDALAEALGKSAKYIWAVGLLAAGQ 1203
BLAST of mRNA_H-elongata_contig11206.979.1 vs. uniprot
Match: A0A7S2Y3E1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3E1_9STRA) HSP 1 Score: 177 bits (448), Expect = 5.480e-49 Identity = 97/204 (47.55%), Postives = 135/204 (66.18%), Query Frame = 1
Query: 1 LDTFTFLFIHVLGVRKLEALFVFLVSVMTVAFFVDFGISPPTASDVAEGFSFTLHSYALVTALGLIGAVIMPHNIYLHSALVLSRTFDRSNPKKLWEATKYYTIDSGIALTVAFLINLAVVCTFAKQFYDISCSTASTLSACFTGSSIDLSEPS------YGTCDEGAGVCQEIGLSAAADALKGTLGSAAKYVWAVGLLVRGR 594
+D F FL + GV+ LE F+ LV ++TV F V++ I P +VAEGF + YA+V A+GL G+ +MPHN++LHSALVL+R DR++P+K+ EA KY +IDSG+A+ V FLIN+ V+ +FA FYD C+ A SAC + ++ + S G CD G GVCQEIGLS A +AL+ +LG AK +WA+GLL G+
Sbjct: 202 IDAFAFLALRSCGVKLLEGFFISLVGMITVCFAVNYFIEAPPVEEVAEGFIPDMQGYAMVYAVGLFGSTVMPHNLFLHSALVLTRDIDRNDPRKIREANKYLSIDSGMAVFVTFLINITVIGSFAYNFYDPECAHAEVPSACVSNTAFHNEDASAQGIQVLGVCDGGQGVCQEIGLSMAGEALRESLGGNAKTLWAIGLLASGQ 405
BLAST of mRNA_H-elongata_contig11206.979.1 vs. uniprot
Match: A0A7S3YUG6_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YUG6_9EUKA) HSP 1 Score: 172 bits (435), Expect = 2.000e-47 Identity = 104/209 (49.76%), Postives = 132/209 (63.16%), Query Frame = 1
Query: 1 LDTFTFLFIHVLGVRKLEALFVFLVSVMTVAFFVDFGISPPTASDVAEG-FSFTLHSYALVTALGLIGAVIMPHNIYLHSALVLSRTFDRSNPKKLWEATKYYTIDSGIALTVAFLINLAVVCTFAKQFYDISCSTASTLS-ACFTGSSIDLSEPSY------GTC---DEGAGVCQEIGLSAAADALKGTLGSAAKYVWAVGLLVRGR 594
LDTFTFL H G+RKLE++F ++ VM V FF+++G S A G F T+ YAL+ A+G +GAVIMPHNIYLHSALVLSR DR +P K+WEA KY I+SG+AL ++F IN AVV TF F+++ C++ + AC S + E Y TC G G C EIGLS A AL TLGSAAKY+W VG+L G+
Sbjct: 162 LDTFTFLLFHYWGIRKLESVFCAMIFVMCVCFFINWGKSGTDAGQFMFGLFVPTIEDYALIPAVGTLGAVIMPHNIYLHSALVLSRKIDRRDPTKVWEAIKYNAIESGMALLISFFINAAVVVTFTTHFFNVGCASLEAGNFACVDTRSDGIPEDDYFNGISPDTCVNEHNGYGRCAEIGLSTAGHALGQTLGSAAKYIWGVGVLASGQ 370
BLAST of mRNA_H-elongata_contig11206.979.1 vs. uniprot
Match: A0A8K1CE46_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CE46_PYTOL) HSP 1 Score: 165 bits (417), Expect = 1.000e-44 Identity = 99/205 (48.29%), Postives = 129/205 (62.93%), Query Frame = 1
Query: 1 LDTFTFLFIHVLGVRKLEALFVFLVSVMTVAFFVDFGISPPTASDVAEGFSFTLHSYALVTALGLIGAVIMPHNIYLHSALVLSRTFDRSNPKKLWEATKYYTIDSGIALTVAFLINLAVVCTFAKQFYDISCSTA----STLSACFTGSSIDLSEPSYGTC---DEGAGVCQEIGLSAAADALKGTLGSAAKYVWAVGLLVRGR 594
LDTFTFL +H G+RKLEA FV L+ +M V FF +F + + GF + YA+ A+G++GAVIMPHNI+LHSALV +R D N +K+ EA KY+ I+SG AL V+FLINLAV+ FAK F+ CS + SAC G + D +YGTC + +G+CQ IGLS A AL LG A+ +WAVGLL G+
Sbjct: 191 LDTFTFLLLHRYGIRKLEAFFVSLIGIMLVCFFANFVRGGIDSEGILGGFVPEVQPYAVTQAVGILGAVIMPHNIFLHSALVQTRRIDHQNTRKVTEANKYFAIESGGALIVSFLINLAVLAVFAKGFFSPDCSASFDQFGVNSACVPGGAAD--GDTYGTCTLANGASGMCQSIGLSQAGSALSEMLGGYAEIIWAVGLLAAGQ 393
BLAST of mRNA_H-elongata_contig11206.979.1 vs. uniprot
Match: A0A7S3YLW2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLW2_HETAK) HSP 1 Score: 162 bits (411), Expect = 5.680e-44 Identity = 95/201 (47.26%), Postives = 132/201 (65.67%), Query Frame = 1
Query: 4 DTFTFLFIHVLGVRKLEALFVFLVSVMTVAFFVDFGISPPTASDVAEGFSFTLHSYALVTALGLIGAVIMPHNIYLHSALVLSRTFDRSNPKKLWEATKYYTIDSGIALTVAFLINLAVVCTFAKQFYDISCSTASTLSACFTGSSIDLSEPS--YGTCDE--GAGVCQEIGLSAAADALKGTLGSAAKYVWAVGLLVRGR 594
D F FL + G+R LEA F+ +V +M+ F ++F P A ++ GF+ L YA TA+G++GAV+MPHN++LHSALVL+R DR + ++ +A KY +DS I+L ++F+INLAV+ +FA FY +C+ AST+SAC +D EPS YG C GAG C E+GLS A D L TLG+ AK +WAVGLL G+
Sbjct: 149 DAFLFLGLKGFGIRPLEAFFMSMVGLMSATFLLNFARDAPPAGELLAGFAPLLRPYAAPTAVGVLGAVVMPHNLFLHSALVLTRGLDRRDQDQVRQALKYTYLDSAISLFISFVINLAVIGSFAYNFYSPTCARASTMSAC-VNHPLDGIEPSQLYGDCTNTLGAGQCMEVGLSQAGDVLGRTLGATAKALWAVGLLASGQ 348
BLAST of mRNA_H-elongata_contig11206.979.1 vs. uniprot
Match: K3X5J7_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X5J7_GLOUD) HSP 1 Score: 162 bits (411), Expect = 5.940e-44 Identity = 99/205 (48.29%), Postives = 133/205 (64.88%), Query Frame = 1
Query: 1 LDTFTFLFIHVLGVRKLEALFVFLVSVMTVAFFVDFGISPPTASDVAEGFSFTLHSYALVTALGLIGAVIMPHNIYLHSALVLSRTFDRSNPKKLWEATKYYTIDSGIALTVAFLINLAVVCTFAKQFYDISCSTASTL----SACFTGSSIDLSEPSYGTCDEGAG---VCQEIGLSAAADALKGTLGSAAKYVWAVGLLVRGR 594
LDTFTFL +H G+RKLEA FV L+++M V FFV+F DVA GF + YA+ A+G++GAVIMPHNI+LHSALV +R D N +K+ EA KY+ I+SG AL V+FLINLAV+ F+K F+ C+++ + SAC G + D P+YG C +G +CQ IGLS A A+ LG A+ +WA+GLL G+
Sbjct: 192 LDTFTFLLLHRYGIRKLEAFFVALITIMLVCFFVNFVRGGIDTLDVATGFLPHVERYAVTQAVGILGAVIMPHNIFLHSALVQTRQVDPHNHRKVHEANKYFAIESGGALFVSFLINLAVLGVFSKGFFSPDCTSSYDVYGVNSACVPGGTAD--GPTYGHCALASGKQGMCQGIGLSQAGQAMSEMLGGYAEVIWAIGLLAAGQ 394
BLAST of mRNA_H-elongata_contig11206.979.1 vs. uniprot
Match: A0A6A3ILC1_9STRA (Metal transporter n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ILC1_9STRA) HSP 1 Score: 162 bits (409), Expect = 1.120e-43 Identity = 99/203 (48.77%), Postives = 126/203 (62.07%), Query Frame = 1
Query: 4 DTFTFLFIHVLGVRKLEALFVFLVSVMTVAFFVDFGISPPTASDVAEGFSFTLHSYALVTALGLIGAVIMPHNIYLHSALVLSRTFDRSNPKKLWEATKYYTIDSGIALTVAFLINLAVVCTFAKQFYDISCSTA----STLSACFTGSSIDLSEPSYGTCD--EGAGVCQEIGLSAAADALKGTLGSAAKYVWAVGLLVRGR 594
DT TFL +H G+RKLEA FV L+ VM V F + + DVA GF + SYA+ A+G++GAVIMPHNI+LHSALV SR DR + +K+ EA KY+ I+SGIAL V+FLINLAV+ FAK F+ CS +AC G+ D +YG C G G+CQ IGLS A AL G G + +WA+GLL G+
Sbjct: 170 DTLTFLLLHRYGIRKLEAFFVSLIVVMLVCFCANLVRGDVASVDVARGFVPRVESYAVTQAVGIVGAVIMPHNIFLHSALVQSRQVDRHDVRKVREANKYFAIESGIALFVSFLINLAVLAVFAKGFFSSDCSATFESDGLNTACVPGAGAD--GDAYGACHLTNGEGMCQPIGLSQAGIALNGMRGQYSDVIWAIGLLAAGQ 370 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11206.979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11206.979.1 >prot_H-elongata_contig11206.979.1 ID=prot_H-elongata_contig11206.979.1|Name=mRNA_H-elongata_contig11206.979.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=198bp LDTFTFLFIHVLGVRKLEALFVFLVSVMTVAFFVDFGISPPTASDVAEGFback to top mRNA from alignment at H-elongata_contig11206:6710..8440+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11206.979.1 ID=mRNA_H-elongata_contig11206.979.1|Name=mRNA_H-elongata_contig11206.979.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1731bp|location=Sequence derived from alignment at H-elongata_contig11206:6710..8440+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11206:6710..8440+ >mRNA_H-elongata_contig11206.979.1 ID=mRNA_H-elongata_contig11206.979.1|Name=mRNA_H-elongata_contig11206.979.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1188bp|location=Sequence derived from alignment at H-elongata_contig11206:6710..8440+ (Himanthalia elongata Himel1 dioecious)back to top |