mRNA_H-elongata_contig112035.976.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig112035.976.1
Unique NamemRNA_H-elongata_contig112035.976.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig112035.976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig112035contigH-elongata_contig112035:226..728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size396
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929642.3631182-CDS-H-elongata_contig112035:225..4301622929642.3631182-CDS-H-elongata_contig112035:225..430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112035 226..430 -
1691679102.710076-CDS-H-elongata_contig112035:225..4301691679102.710076-CDS-H-elongata_contig112035:225..430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112035 226..430 -
1622929642.3809752-CDS-H-elongata_contig112035:537..7281622929642.3809752-CDS-H-elongata_contig112035:537..728Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112035 538..728 -
1691679102.7188344-CDS-H-elongata_contig112035:537..7281691679102.7188344-CDS-H-elongata_contig112035:537..728Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig112035 538..728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig112035.976.1prot_H-elongata_contig112035.976.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig112035 226..728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig112035.976.1

>prot_H-elongata_contig112035.976.1 ID=prot_H-elongata_contig112035.976.1|Name=mRNA_H-elongata_contig112035.976.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
ETWWADGDGNCFWRSLSLSIWRSQRFHRQVKLVVLVYASEKPENLVSEGH
HLHNSITYYCCCCWFVGSGNATQHDFMLLAVLSPLCSDGNWTGRIMACLA
FEAFGCIVKFIHPVDKDARVKKDASAVSSGRG
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mRNA from alignment at H-elongata_contig112035:226..728-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig112035.976.1 ID=mRNA_H-elongata_contig112035.976.1|Name=mRNA_H-elongata_contig112035.976.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=503bp|location=Sequence derived from alignment at H-elongata_contig112035:226..728- (Himanthalia elongata Himel1 dioecious)
GAAACCTGGTGGGCCGACGGAGACGGAAATTGTTTTTGGCGGTCGTTGTC
GCTGAGTATATGGAGGTCGCAGCGCTTTCACAGACAGGTGAAGCTCGTCG
TGCTGGTATACGCTTCGGAAAAACCAGAGAACCTCGTAAGCGAAGGCCAC
CATCTCCACAACAGCATCACCTACTATTGTTGTTGTTGTTGGTCGCACTT
TTAGCAGAAGGAAGAGCCGGATATGGTTACCTTCTGCTCGTGGTCAGCTT
TACAGGGTTTCCCCTGTAAATACAGTACGATTCATCCGTGGTGCAAAGGT
TTGTGGGCTCCGGGAATGCAACGCAGCACGATTTTATGCTTTTGGCAGTA
CTTTCTCCCCTCTGTTCTGACGGCAATTGGACCGGACGGATTATGGCGTG
CTTGGCCTTTGAAGCTTTTGGCTGCATCGTTAAATTCATCCATCCCGTGG
ACAAAGATGCCAGGGTAAAGAAAGACGCGAGTGCGGTCTCCAGTGGAAGA
GGA
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Coding sequence (CDS) from alignment at H-elongata_contig112035:226..728-

>mRNA_H-elongata_contig112035.976.1 ID=mRNA_H-elongata_contig112035.976.1|Name=mRNA_H-elongata_contig112035.976.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig112035:226..728- (Himanthalia elongata Himel1 dioecious)
GAAACCTGGTGGGCCGACGGAGACGGAAATTGTTTTTGGCGGTCGTTGTC
GCTGAGTATATGGAGGTCGCAGCGCTTTCACAGACAGGTGAAGCTCGTCG
TGCTGGTATACGCTTCGGAAAAACCAGAGAACCTCGTAAGCGAAGGCCAC
CATCTCCACAACAGCATCACCTACTATTGTTGTTGTTGTTGGAAACCTGG
TGGGCCGACGGAGACGGAAATTGTTTTTGGCGGTCGTTGTCGCTGAGTAT
ATGGAGGTCGCAGCGCTTTCACAGACAGGTGAAGCTCGTCGTGCTGGTAT
ACGCTTCGGAAAAACCAGAGAACCTCGTAAGCGAAGGCCACCATCTCCAC
AACAGCATCACCTACTATTGTTGTTGTTGTTGGTTTGTGGGCTCCGGGAA
TGCAACGCAGCACGATTTTATGCTTTTGGCAGTACTTTCTCCCCTCTGTT
CTGACGGCAATTGGACCGGACGGATTATGGCGTGCTTGGCCTTTGAAGCT
TTTGGCTGCATCGTTAAATTCATCCATCCCGTGGACAAAGATGCCAGGGT
AAAGAAAGACGCGAGTGCGGTCTCCAGTGGAAGAGGAGTTTGTGGGCTCC
GGGAATGCAACGCAGCACGATTTTATGCTTTTGGCAGTACTTTCTCCCCT
CTGTTCTGACGGCAATTGGACCGGACGGATTATGGCGTGCTTGGCCTTTG
AAGCTTTTGGCTGCATCGTTAAATTCATCCATCCCGTGGACAAAGATGCC
AGGGTAAAGAAAGACGCGAGTGCGGTCTCCAGTGGAAGAGGA
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