mRNA_H-elongata_contig111933.972.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111933.972.1
Unique NamemRNA_H-elongata_contig111933.972.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig111933.972.1 vs. uniprot
Match: D7FUR5_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUR5_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 9.280e-28
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:   13 WESQEGAHTPSGSKTPIMICGWLYKMKRKKRKFRSTWNRRWFTVEDGALHWYKTS 177
            WESQEGAHTPSGSKTPI+ICGWL KMKR+ RKFRSTWNRRWFTVEDGA +WYKTS
Sbjct:   16 WESQEGAHTPSGSKTPIIICGWLLKMKREHRKFRSTWNRRWFTVEDGAFNWYKTS 70
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BLAST of mRNA_H-elongata_contig111933.972.1 vs. uniprot
Match: A0A835ZH79_9STRA (PH domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH79_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 7.910e-14
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:   58 PIMICGWLYKMKRKKRKFRSTWNRRWFTVEDGALHWY 168
            PI +CGWL+KMKR +RKFRSTW RRWFTV+DG L WY
Sbjct:    1 PIYLCGWLHKMKRTQRKFRSTWARRWFTVQDGCLLWY 37
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BLAST of mRNA_H-elongata_contig111933.972.1 vs. uniprot
Match: A0A7S2HE46_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HE46_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.740e-10
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   55 TPIMICGWLYKMKRKKRKFRSTWNRRWFTVEDGALHWYKTSR 180
            +PI++ GWL K+KR +R F STWNRRWFT++DG L+WY   R
Sbjct:    8 SPIVMRGWLLKLKRNQRLFMSTWNRRWFTIQDGRLNWYSGKR 49
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111933.972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FUR5_ECTSI9.280e-2889.09PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A835ZH79_9STRA7.910e-1475.68PH domain-containing protein (Fragment) n=1 Tax=Tr... [more]
A0A7S2HE46_9STRA1.740e-1059.52Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111933contigH-elongata_contig111933:1638..1820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPleckstrin homology domain
Ec32 orthologEc-19_004210.1
Exons1
Model size183
Cds size183
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929642.0094378-CDS-H-elongata_contig111933:1637..18201622929642.0094378-CDS-H-elongata_contig111933:1637..1820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111933 1638..1820 +
1691679102.542028-CDS-H-elongata_contig111933:1637..18201691679102.542028-CDS-H-elongata_contig111933:1637..1820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111933 1638..1820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111933.972.1prot_H-elongata_contig111933.972.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111933 1638..1820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111933.972.1

>prot_H-elongata_contig111933.972.1 ID=prot_H-elongata_contig111933.972.1|Name=mRNA_H-elongata_contig111933.972.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
MLRPWESQEGAHTPSGSKTPIMICGWLYKMKRKKRKFRSTWNRRWFTVED
GALHWYKTSR*
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mRNA from alignment at H-elongata_contig111933:1638..1820+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111933.972.1 ID=mRNA_H-elongata_contig111933.972.1|Name=mRNA_H-elongata_contig111933.972.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig111933:1638..1820+ (Himanthalia elongata Himel1 dioecious)
ATGCTTCGGCCATGGGAGAGTCAAGAGGGTGCGCACACTCCTTCCGGATC
GAAGACGCCTATCATGATATGTGGCTGGCTCTATAAGATGAAGCGTAAGA
AACGCAAGTTCCGATCGACCTGGAACCGGCGTTGGTTCACGGTGGAGGAC
GGAGCTCTCCACTGGTACAAGACATCTAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig111933:1638..1820+

>mRNA_H-elongata_contig111933.972.1 ID=mRNA_H-elongata_contig111933.972.1|Name=mRNA_H-elongata_contig111933.972.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig111933:1638..1820+ (Himanthalia elongata Himel1 dioecious)
ATGCTTCGGCCATGGGAGAGTCAAGAGGGTGCGCACACTCCTTCCGGATC
GAAGACGCCTATCATGATATGTGGCTGGCTCTATAAGATGAAGCGTAAGA
AACGCAAGTTCCGATCGACCTGGAACCGGCGTTGGTTCACGGTGGAGGAC
GGAGCTCTCCACTGGTACAAGACATCTAGGTGAATGCTTCGGCCATGGGA
GAGTCAAGAGGGTGCGCACACTCCTTCCGGATCGAAGACGCCTATCATGA
TATGTGGCTGGCTCTATAAGATGAAGCGTAAGAAACGCAAGTTCCGATCG
ACCTGGAACCGGCGTTGGTTCACGGTGGAGGACGGAGCTCTCCACTGGTA
CAAGACATCTAGGTGA
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