mRNA_H-elongata_contig111899.970.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111899.970.1
Unique NamemRNA_H-elongata_contig111899.970.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig111899.970.1 vs. uniprot
Match: D7FLX7_ECTSI (PepX_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLX7_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.670e-17
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    4 QDSIEVLDWIEGQPWSNGRVGLWGVSYEGTSAFFTSLLRHPTV 132
            QDS+EVLDWI+ Q WSNGRV LWGVSYEGTSAFFTSLLRHP+V
Sbjct:  230 QDSLEVLDWIDQQSWSNGRVALWGVSYEGTSAFFTSLLRHPSV 272
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BLAST of mRNA_H-elongata_contig111899.970.1 vs. uniprot
Match: A0A485LIF8_9STRA (Aste57867_21547 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LIF8_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 9.230e-13
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    7 DSIEVLDWIEGQPWSNGRVGLWGVSYEGTSAFFTSLLRHPTV 132
            DS+++LDWI  QPWSNG VGLWG+SYEGT+A+ T+ + HP V
Sbjct:  182 DSVDMLDWITRQPWSNGSVGLWGISYEGTAAYLTASMNHPAV 223
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BLAST of mRNA_H-elongata_contig111899.970.1 vs. uniprot
Match: W4H306_9STRA (PepX_C domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H306_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.360e-12
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    4 QDSIEVLDWIEGQPWSNGRVGLWGVSYEGTSAFFTSLLRHPTV 132
            QDS++V+DWI  QPWSNGRVGLWG+SYE T+A+ T    HP +
Sbjct:  175 QDSVDVIDWITRQPWSNGRVGLWGMSYEATAAYLTVSTHHPAI 217
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BLAST of mRNA_H-elongata_contig111899.970.1 vs. uniprot
Match: W4H479_9STRA (Peptidase_S15 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H479_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.360e-12
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    4 QDSIEVLDWIEGQPWSNGRVGLWGVSYEGTSAFFTSLLRHPTV 132
            QDS++V+DWI  QPWSNGRVGLWG+SYE T+A+ T    HP +
Sbjct:  175 QDSVDVIDWITRQPWSNGRVGLWGMSYEATAAYLTVSTHHPAI 217
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BLAST of mRNA_H-elongata_contig111899.970.1 vs. uniprot
Match: A0A397B2V1_9STRA (Peptidase_S15 domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397B2V1_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.720e-12
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    4 QDSIEVLDWIEGQPWSNGRVGLWGVSYEGTSAFFTSLLRHPTV 132
            QDS++V+DWI  QPWSNGRVGLWG+SYE T+A+ T    HP +
Sbjct:  101 QDSVDVVDWITRQPWSNGRVGLWGMSYEATAAYLTVSTHHPAI 143
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BLAST of mRNA_H-elongata_contig111899.970.1 vs. uniprot
Match: A0A397CJB9_9STRA (PepX_C domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CJB9_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.150e-12
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    4 QDSIEVLDWIEGQPWSNGRVGLWGVSYEGTSAFFTSLLRHPTV 132
            QDS++V+DWI  QPWSNGRVGLWG+SYE T+A+ T    HP +
Sbjct:  101 QDSVDVVDWITRQPWSNGRVGLWGMSYEATAAYLTVSTHHPAI 143
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BLAST of mRNA_H-elongata_contig111899.970.1 vs. uniprot
Match: A0A024TL73_9STRA (PepX_C domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TL73_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.220e-12
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:    4 QDSIEVLDWIEGQPWSNGRVGLWGVSYEGTSAFFTSLLRHPTV 132
            QDS++V+DWI  QPWSNGRVGLWG+SYE T+A+ T    HP +
Sbjct:  191 QDSVDVIDWITRQPWSNGRVGLWGMSYEATAAYLTVSKHHPAI 233
[Close]
BLAST of mRNA_H-elongata_contig111899.970.1 vs. uniprot
Match: A0A1V9YDQ9_9STRA (PepX_C domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YDQ9_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 8.210e-12
Identity = 25/42 (59.52%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    7 DSIEVLDWIEGQPWSNGRVGLWGVSYEGTSAFFTSLLRHPTV 132
            DS+EV+DWI  Q WSNG++GLWG+SYEGT+A+ ++ ++HP V
Sbjct:  167 DSVEVMDWIVRQSWSNGQIGLWGISYEGTAAYLSASMQHPAV 208
[Close]
BLAST of mRNA_H-elongata_contig111899.970.1 vs. uniprot
Match: A0A067CFB8_SAPPC (PepX_C domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CFB8_SAPPC)

HSP 1 Score: 66.6 bits (161), Expect = 1.120e-11
Identity = 26/42 (61.90%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    7 DSIEVLDWIEGQPWSNGRVGLWGVSYEGTSAFFTSLLRHPTV 132
            DS+EVLDWI  QP+SNG++ LWG+SYEGT+A+ T+ ++HP V
Sbjct:   94 DSVEVLDWIVQQPFSNGQIALWGISYEGTAAYLTASMKHPAV 135
[Close]
BLAST of mRNA_H-elongata_contig111899.970.1 vs. uniprot
Match: A0A6G0X515_9STRA (PepX_C domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X515_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.870e-11
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 1 
Query:    4 QDSIEVLDWIEGQPWSNGRVGLWGVSYEGTSAFFTSLLRHPTV 132
            QDS ++LDWI  Q WSNGRVGLWG+SYE  +A+ T+ L HP V
Sbjct:  176 QDSADILDWITKQSWSNGRVGLWGISYEAVAAYKTASLNHPAV 218
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111899.970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLX7_ECTSI1.670e-1786.05PepX_C domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A485LIF8_9STRA9.230e-1364.29Aste57867_21547 protein n=1 Tax=Aphanomyces stella... [more]
W4H306_9STRA2.360e-1262.79PepX_C domain-containing protein n=1 Tax=Aphanomyc... [more]
W4H479_9STRA2.360e-1262.79Peptidase_S15 domain-containing protein n=2 Tax=Ap... [more]
A0A397B2V1_9STRA2.720e-1262.79Peptidase_S15 domain-containing protein n=4 Tax=Ap... [more]
A0A397CJB9_9STRA3.150e-1262.79PepX_C domain-containing protein n=4 Tax=Aphanomyc... [more]
A0A024TL73_9STRA3.220e-1262.79PepX_C domain-containing protein n=2 Tax=Aphanomyc... [more]
A0A1V9YDQ9_9STRA8.210e-1259.52PepX_C domain-containing protein n=1 Tax=Achlya hy... [more]
A0A067CFB8_SAPPC1.120e-1161.90PepX_C domain-containing protein n=1 Tax=Saprolegn... [more]
A0A6G0X515_9STRA2.870e-1162.79PepX_C domain-containing protein n=1 Tax=Aphanomyc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111899contigH-elongata_contig111899:304..435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog2880.D7FLX7
EggNOG free text desc.X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
EggNOG OGs2A9IM@1,2RYIS@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size132
Cds size132
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929641.8722732-CDS-H-elongata_contig111899:303..4351622929641.8722732-CDS-H-elongata_contig111899:303..435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111899 304..435 +
1691679102.4862237-CDS-H-elongata_contig111899:303..4351691679102.4862237-CDS-H-elongata_contig111899:303..435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111899 304..435 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111899.970.1prot_H-elongata_contig111899.970.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111899 304..435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111899.970.1

>prot_H-elongata_contig111899.970.1 ID=prot_H-elongata_contig111899.970.1|Name=mRNA_H-elongata_contig111899.970.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=44bp
MQDSIEVLDWIEGQPWSNGRVGLWGVSYEGTSAFFTSLLRHPTV
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mRNA from alignment at H-elongata_contig111899:304..435+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111899.970.1 ID=mRNA_H-elongata_contig111899.970.1|Name=mRNA_H-elongata_contig111899.970.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at H-elongata_contig111899:304..435+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGATTCGATAGAAGTCCTGGACTGGATCGAGGGTCAGCCTTGGAG
CAACGGGAGGGTGGGACTGTGGGGAGTGAGCTACGAGGGCACCAGCGCCT
TCTTCACGTCGCTGCTGAGACATCCCACCGTG
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Coding sequence (CDS) from alignment at H-elongata_contig111899:304..435+

>mRNA_H-elongata_contig111899.970.1 ID=mRNA_H-elongata_contig111899.970.1|Name=mRNA_H-elongata_contig111899.970.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=264bp|location=Sequence derived from alignment at H-elongata_contig111899:304..435+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGATTCGATAGAAGTCCTGGACTGGATCGAGGGTCAGCCTTGGAG
CAACGGGAGGGTGGGACTGTGGGGAGTGAGCTACGAGGGCACCAGCGCCT
TCTTCACGTCGCTGCTGAGACATCCCACCGTGATGCAGGATTCGATAGAA
GTCCTGGACTGGATCGAGGGTCAGCCTTGGAGCAACGGGAGGGTGGGACT
GTGGGGAGTGAGCTACGAGGGCACCAGCGCCTTCTTCACGTCGCTGCTGA
GACATCCCACCGTG
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