mRNA_H-elongata_contig111887.969.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111887.969.1
Unique NamemRNA_H-elongata_contig111887.969.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig111887.969.1 vs. uniprot
Match: A0A6H5JRE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE2_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.930e-11
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:    1 RDEEGRLLRVKGRIRERWVRFFRSLLNAKSDMLDPDIPKRLPHHPVASALGIEPTEEEIVKAIKAMANVKAVGPNGLPAKLLK 249
            +DE+G++LR     R+RW R+F  LLN +S  +D     R+   P    L   P+  E+ +A++ MAN KAVGP+ LPA+L+K
Sbjct:   16 KDEDGKVLRDPTLTRQRWARWFHKLLNTRSPTIDLHATDRVKQWPTCVPLDDIPSLFEVEEAVRGMANRKAVGPDDLPAELIK 98
[Close]
BLAST of mRNA_H-elongata_contig111887.969.1 vs. uniprot
Match: A0A6H5K0P7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P7_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.530e-11
Identity = 35/83 (42.17%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:    1 RDEEGRLLRVKGRIRERWVRFFRSLLNAKSDMLDPDIPKRLPHHPVASALGIEPTEEEIVKAIKAMANVKAVGPNGLPAKLLK 249
            +DE+G++LR    IR+RW R+F  LLN KS  +D     ++   P    L   P+  E+ +A++ MAN KAVGP+ LPA+L+K
Sbjct:   61 KDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIK 143
[Close]
BLAST of mRNA_H-elongata_contig111887.969.1 vs. uniprot
Match: A0A6H5KXZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXZ7_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.680e-11
Identity = 35/83 (42.17%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:    1 RDEEGRLLRVKGRIRERWVRFFRSLLNAKSDMLDPDIPKRLPHHPVASALGIEPTEEEIVKAIKAMANVKAVGPNGLPAKLLK 249
            +DE+G++LR    IR+RW R+F  LLN KS  +D     ++   P    L   P+  E+ +A++ MAN KAVGP+ LPA+L+K
Sbjct:   60 KDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIK 142
[Close]
BLAST of mRNA_H-elongata_contig111887.969.1 vs. uniprot
Match: A0A6H5L012_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L012_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.810e-11
Identity = 35/83 (42.17%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:    1 RDEEGRLLRVKGRIRERWVRFFRSLLNAKSDMLDPDIPKRLPHHPVASALGIEPTEEEIVKAIKAMANVKAVGPNGLPAKLLK 249
            +DE+G++LR    IR+RW R+F  LLN KS  +D     ++   P    L   P+  E+ +A++ MAN KAVGP+ LPA+L+K
Sbjct:   83 KDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLREVEEAVREMANRKAVGPDDLPAELIK 165
[Close]
BLAST of mRNA_H-elongata_contig111887.969.1 vs. uniprot
Match: A0A6H5JP69_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP69_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 3.550e-11
Identity = 35/83 (42.17%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:    1 RDEEGRLLRVKGRIRERWVRFFRSLLNAKSDMLDPDIPKRLPHHPVASALGIEPTEEEIVKAIKAMANVKAVGPNGLPAKLLK 249
            +DE+G +LR    IR+RW R+F  LLN KS  +D     ++   P    L   P+  E+ +A++ MAN KAVGP+ LPA+L+K
Sbjct:   16 KDEDGEVLRDPTFIRQRWARWFLKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIK 98
[Close]
BLAST of mRNA_H-elongata_contig111887.969.1 vs. uniprot
Match: A0A6H5JQE0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQE0_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 8.530e-11
Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:    1 RDEEGRLLRVKGRIRERWVRFFRSLLNAKSDMLDPDIPKRLPHHPVASALGIEPTEEEIVKAIKAMANVKAVGPNGLPAKLLK 249
            +DE+G++L+    IR+RW R+F  LLN KS  +D     ++   P    L   P+  E+ +A++ MAN KAVGP+ LPA+L+K
Sbjct:   18 KDEDGKVLQDPAFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIK 100
[Close]
BLAST of mRNA_H-elongata_contig111887.969.1 vs. uniprot
Match: A0A6H5JLR4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLR4_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.000e-10
Identity = 35/83 (42.17%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:    1 RDEEGRLLRVKGRIRERWVRFFRSLLNAKSDMLDPDIPKRLPHHPVASALGIEPTEEEIVKAIKAMANVKAVGPNGLPAKLLK 249
            +DE+G++LR    IR+RW R+F  LLN KS  +D     ++   P    L   P+  E+ +A++ MAN KAVGP+ LPA+L+K
Sbjct:   17 KDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRGPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIK 99
[Close]
BLAST of mRNA_H-elongata_contig111887.969.1 vs. uniprot
Match: A0A6H5K2N1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2N1_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.100e-10
Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:    1 RDEEGRLLRVKGRIRERWVRFFRSLLNAKSDMLDPDIPKRLPHHPVASALGIEPTEEEIVKAIKAMANVKAVGPNGLPAKLLK 249
            ++E G++LR    IR+RW R+F  LLN KS  +D     ++   P    L + P+  E+ +A++ MAN KAVGP+ LPA+L+K
Sbjct:  414 KEENGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCEPLDVMPSLLEVEEAVRDMANGKAVGPDDLPAELIK 496
[Close]
BLAST of mRNA_H-elongata_contig111887.969.1 vs. uniprot
Match: A0A6H5K0F8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0F8_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.110e-10
Identity = 35/82 (42.68%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:    4 DEEGRLLRVKGRIRERWVRFFRSLLNAKSDMLDPDIPKRLPHHPVASALGIEPTEEEIVKAIKAMANVKAVGPNGLPAKLLK 249
            DE+G++LR    IR+RW R+F  LLN KS  +D     ++   P    L   P+  E+ +A++ MAN KAVGP+ LPA+L+K
Sbjct:   74 DEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIK 155
[Close]
BLAST of mRNA_H-elongata_contig111887.969.1 vs. uniprot
Match: A0A6H5JGC2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGC2_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.320e-10
Identity = 35/83 (42.17%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:    1 RDEEGRLLRVKGRIRERWVRFFRSLLNAKSDMLDPDIPKRLPHHPVASALGIEPTEEEIVKAIKAMANVKAVGPNGLPAKLLK 249
            +DE+G++LR    IR+RW R+F  LLN KS  +D     ++   P    L   P+  E+ +A++ MAN KAVGP+ LPA+L+K
Sbjct:  233 KDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDNLPAELIK 315
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111887.969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRE2_9PHAE1.930e-1140.96Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K0P7_9PHAE2.530e-1142.17Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KXZ7_9PHAE2.680e-1142.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L012_9PHAE2.810e-1142.17Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP69_9PHAE3.550e-1142.17Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQE0_9PHAE8.530e-1140.96Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JLR4_9PHAE1.000e-1042.17Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K2N1_9PHAE1.100e-1040.96Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K0F8_9PHAE1.110e-1042.68Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JGC2_9PHAE1.320e-1042.17Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111887contigH-elongata_contig111887:1889..2137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score61.2
Seed ortholog evalue2.6e-07
Seed eggNOG ortholog6500.XP_005096957.1
EggNOG free text desc.protein kinase activity
EggNOG OGs39TZY@33154,3BI15@33208,KOG1075@1,KOG1075@2759
COG Functional cat.J
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929641.8230822-CDS-H-elongata_contig111887:1888..21371622929641.8230822-CDS-H-elongata_contig111887:1888..2137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111887 1889..2137 +
1691679102.4706893-CDS-H-elongata_contig111887:1888..21371691679102.4706893-CDS-H-elongata_contig111887:1888..2137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111887 1889..2137 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111887.969.1prot_H-elongata_contig111887.969.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111887 1889..2137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111887.969.1

>prot_H-elongata_contig111887.969.1 ID=prot_H-elongata_contig111887.969.1|Name=mRNA_H-elongata_contig111887.969.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
RDEEGRLLRVKGRIRERWVRFFRSLLNAKSDMLDPDIPKRLPHHPVASAL
GIEPTEEEIVKAIKAMANVKAVGPNGLPAKLLK
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mRNA from alignment at H-elongata_contig111887:1889..2137+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111887.969.1 ID=mRNA_H-elongata_contig111887.969.1|Name=mRNA_H-elongata_contig111887.969.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=249bp|location=Sequence derived from alignment at H-elongata_contig111887:1889..2137+ (Himanthalia elongata Himel1 dioecious)
AGAGATGAGGAAGGAAGACTGCTACGCGTCAAAGGGCGTATCCGCGAGAG
GTGGGTGCGATTCTTCCGCTCGTTGTTGAACGCTAAATCCGACATGCTCG
ATCCCGATATCCCGAAGAGGCTGCCACATCATCCAGTTGCGAGTGCCCTC
GGTATCGAGCCCACGGAGGAGGAGATTGTCAAAGCGATTAAGGCAATGGC
AAACGTGAAAGCAGTGGGGCCGAATGGTCTTCCCGCGAAACTGCTGAAA
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Coding sequence (CDS) from alignment at H-elongata_contig111887:1889..2137+

>mRNA_H-elongata_contig111887.969.1 ID=mRNA_H-elongata_contig111887.969.1|Name=mRNA_H-elongata_contig111887.969.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig111887:1889..2137+ (Himanthalia elongata Himel1 dioecious)
AGAGATGAGGAAGGAAGACTGCTACGCGTCAAAGGGCGTATCCGCGAGAG
GTGGGTGCGATTCTTCCGCTCGTTGTTGAACGCTAAATCCGACATGCTCG
ATCCCGATATCCCGAAGAGGCTGCCACATCATCCAGTTGCGAGTGCCCTC
GGTATCGAGCCCACGGAGGAGGAGATTGTCAAAGCGATTAAGGCAATGGC
AAACGTGAAAGCAGTGGGGCCGAATGGTCTTCCCGCGAAACTGCTGAAAA
GAGATGAGGAAGGAAGACTGCTACGCGTCAAAGGGCGTATCCGCGAGAGG
TGGGTGCGATTCTTCCGCTCGTTGTTGAACGCTAAATCCGACATGCTCGA
TCCCGATATCCCGAAGAGGCTGCCACATCATCCAGTTGCGAGTGCCCTCG
GTATCGAGCCCACGGAGGAGGAGATTGTCAAAGCGATTAAGGCAATGGCA
AACGTGAAAGCAGTGGGGCCGAATGGTCTTCCCGCGAAACTGCTGAAA
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