mRNA_H-elongata_contig111829.962.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111829.962.1
Unique NamemRNA_H-elongata_contig111829.962.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig111829.962.1 vs. uniprot
Match: A0A6H5KU22_9PHAE (UAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU22_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 8.680e-22
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 QPSISEEAKTYCRRYNVTGFPHIALIDPRTGLKVWSYQGFLGTPEFIEK 147
            QPSISEEAK YCRRYN TGFPHIALIDPRTG++VW++QGFL  PEFIEK
Sbjct:  263 QPSISEEAKLYCRRYNATGFPHIALIDPRTGMRVWNFQGFLAPPEFIEK 311
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BLAST of mRNA_H-elongata_contig111829.962.1 vs. uniprot
Match: D7FS95_ECTSI (UBX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS95_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 2.460e-21
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 QPSISEEAKTYCRRYNVTGFPHIALIDPRTGLKVWSYQGFLGTPEFIEK 147
            QPSISEEAK YCRRYN TGFPHIALIDPRTG+KVW++ GFL  PEFIEK
Sbjct:  263 QPSISEEAKLYCRRYNATGFPHIALIDPRTGMKVWNFHGFLAPPEFIEK 311
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BLAST of mRNA_H-elongata_contig111829.962.1 vs. uniprot
Match: A0A1Z5JIC2_FISSO (UBX domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIC2_FISSO)

HSP 1 Score: 52.0 bits (123), Expect = 2.040e-6
Identity = 21/40 (52.50%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    1 QPSISEEAKTYCRRYNVTGFPHIALIDPRTGLKVWSYQGF 120
            Q  I+ E +TY  RY VT +PH+A+IDPRTG  VW  +G+
Sbjct:  228 QRDITPEGQTYVERYKVTDYPHVAIIDPRTGRLVWKKEGW 267
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BLAST of mRNA_H-elongata_contig111829.962.1 vs. uniprot
Match: A0A7S1E568_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E568_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 1.590e-5
Identity = 19/42 (45.24%), Postives = 26/42 (61.90%), Query Frame = 1 
Query:   13 SEEAKTYCRRYNVTGFPHIALIDPRTGLKVWSYQGFLGTPEF 138
            S + +TY  RY V  FPHIA++DPRTG  +W  +G+     F
Sbjct:   12 SADGQTYAERYKVCAFPHIAIVDPRTGRSLWKKEGWTQVKPF 53
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BLAST of mRNA_H-elongata_contig111829.962.1 vs. uniprot
Match: K0RPX8_THAOC (UBX domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RPX8_THAOC)

HSP 1 Score: 48.9 bits (115), Expect = 2.500e-5
Identity = 20/49 (40.82%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:   13 SEEAKTYCRRYNVTGFPHIALIDPRTGLKVWSYQGF-----LGTPEFIE 144
            S E +TY +RY V+G+PH+ ++DPRTG  +W  +G+     L   +F+E
Sbjct:  130 SAEGQTYVQRYRVSGYPHLGIVDPRTGTLLWRKEGWTQVEPLTAEQFVE 178
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BLAST of mRNA_H-elongata_contig111829.962.1 vs. uniprot
Match: A0A7S1E3V9_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E3V9_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 3.040e-5
Identity = 19/42 (45.24%), Postives = 26/42 (61.90%), Query Frame = 1 
Query:   13 SEEAKTYCRRYNVTGFPHIALIDPRTGLKVWSYQGFLGTPEF 138
            S + +TY  RY V  FPHIA++DPRTG  +W  +G+     F
Sbjct:   12 SADGQTYAERYKVCAFPHIAIVDPRTGRSLWKKEGWTQVKPF 53
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BLAST of mRNA_H-elongata_contig111829.962.1 vs. uniprot
Match: A0A7S4JAM1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JAM1_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 3.180e-5
Identity = 17/37 (45.95%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:   10 ISEEAKTYCRRYNVTGFPHIALIDPRTGLKVWSYQGF 120
            +S +  TY +RY+V  +PH+A+IDPRTG  +W  +G+
Sbjct:  155 VSNDGSTYAQRYSVLSYPHVAIIDPRTGRLMWKKEGW 191
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BLAST of mRNA_H-elongata_contig111829.962.1 vs. uniprot
Match: A0A7S4JAM3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JAM3_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 3.420e-5
Identity = 17/37 (45.95%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:   10 ISEEAKTYCRRYNVTGFPHIALIDPRTGLKVWSYQGF 120
            +S +  TY +RY+V  +PH+A+IDPRTG  +W  +G+
Sbjct:  155 VSNDGSTYAQRYSVLSYPHVAIIDPRTGRLMWKKEGW 191
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BLAST of mRNA_H-elongata_contig111829.962.1 vs. uniprot
Match: A0A2C6LBM1_9APIC (Thioredoxin-like protein (Fragment) n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6LBM1_9APIC)

HSP 1 Score: 47.4 bits (111), Expect = 8.790e-5
Identity = 26/54 (48.15%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:   13 SEEAKTYCRRYNVTGFPHIALIDPRTG--LKVWSYQGF---LGTP----EFIEK 147
            + E K +C  Y V  FPHIA+IDPRTG  +K WSY+ F   +G      EF+EK
Sbjct:  278 TSEGKVFCELYKVFTFPHIAVIDPRTGRSMKQWSYRRFSEPVGAQSELFEFLEK 331
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BLAST of mRNA_H-elongata_contig111829.962.1 vs. uniprot
Match: B8CEK1_THAPS (UBX domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CEK1_THAPS)

HSP 1 Score: 47.4 bits (111), Expect = 8.790e-5
Identity = 20/51 (39.22%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:    7 SISEEAKTYCRRYNVTGFPHIALIDPRTGLKVWSYQGF-----LGTPEFIE 144
            S + + +TY  RY V G+PH+A++DPRTG  +W  +G+     L   +F+E
Sbjct:  344 SNTNDGQTYITRYKVQGYPHLAILDPRTGSLLWKKEGWTQVDPLTAEQFVE 394
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111829.962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KU22_9PHAE8.680e-2283.67UAS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FS95_ECTSI2.460e-2183.67UBX domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A1Z5JIC2_FISSO2.040e-652.50UBX domain-containing protein n=2 Tax=Fistulifera ... [more]
A0A7S1E568_9STRA1.590e-545.24Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
K0RPX8_THAOC2.500e-540.82UBX domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A7S1E3V9_9STRA3.040e-545.24Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S4JAM1_9STRA3.180e-545.95Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S4JAM3_9STRA3.420e-545.95Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A2C6LBM1_9APIC8.790e-548.15Thioredoxin-like protein (Fragment) n=1 Tax=Cystoi... [more]
B8CEK1_THAPS8.790e-539.22UBX domain-containing protein n=1 Tax=Thalassiosir... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111829contigH-elongata_contig111829:345..491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue9.5e-18
Seed eggNOG ortholog2880.D7FS95
Preferred nameUBXN7
KEGG rclassRC00029
KEGG koko:K00006
KEGG ReactionR00842
KEGG Pathwayko00564,ko01110,ko04011,map00564,map01110,map04011
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0012505,GO:0016020,GO:0016604,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0030674,GO:0031625,GO:0031974,GO:0031981,GO:0031984,GO:0032182,GO:0032991,GO:0034098,GO:0036211,GO:0042175,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0051603,GO:0060090,GO:0070013,GO:0071704,GO:0098796,GO:0098827,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.ubiquitin binding
EggNOG OGsKOG1364@1,KOG1364@2759
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-05_004870.1
EC1.1.1.8
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929641.2774181-CDS-H-elongata_contig111829:344..4911622929641.2774181-CDS-H-elongata_contig111829:344..491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111829 345..491 -
1691679102.2722957-CDS-H-elongata_contig111829:344..4911691679102.2722957-CDS-H-elongata_contig111829:344..491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111829 345..491 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111829.962.1prot_H-elongata_contig111829.962.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111829 345..491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111829.962.1

>prot_H-elongata_contig111829.962.1 ID=prot_H-elongata_contig111829.962.1|Name=mRNA_H-elongata_contig111829.962.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
QPSISEEAKTYCRRYNVTGFPHIALIDPRTGLKVWSYQGFLGTPEFIEK
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mRNA from alignment at H-elongata_contig111829:345..491-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111829.962.1 ID=mRNA_H-elongata_contig111829.962.1|Name=mRNA_H-elongata_contig111829.962.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig111829:345..491- (Himanthalia elongata Himel1 dioecious)
CAACCGTCAATCTCCGAGGAGGCGAAGACGTACTGCAGGAGATACAACGT
CACGGGGTTTCCACACATCGCGCTCATCGATCCACGGACGGGGCTCAAGG
TTTGGAGCTACCAGGGCTTCCTCGGAACGCCGGAGTTCATCGAGAAA
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Coding sequence (CDS) from alignment at H-elongata_contig111829:345..491-

>mRNA_H-elongata_contig111829.962.1 ID=mRNA_H-elongata_contig111829.962.1|Name=mRNA_H-elongata_contig111829.962.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig111829:345..491- (Himanthalia elongata Himel1 dioecious)
CAACCGTCAATCTCCGAGGAGGCGAAGACGTACTGCAGGAGATACAACGT
CACGGGGTTTCCACACATCGCGCTCATCGATCCACGGACGGGGCTCAAGG
TTTGGAGCTACCAGGGCTTCCTCGGAACGCCGGAGTTCATCGAGAAACAA
CCGTCAATCTCCGAGGAGGCGAAGACGTACTGCAGGAGATACAACGTCAC
GGGGTTTCCACACATCGCGCTCATCGATCCACGGACGGGGCTCAAGGTTT
GGAGCTACCAGGGCTTCCTCGGAACGCCGGAGTTCATCGAGAAA
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