mRNA_H-elongata_contig111804.959.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig111804.959.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE) HSP 1 Score: 270 bits (691), Expect = 1.040e-81 Identity = 142/171 (83.04%), Postives = 147/171 (85.96%), Query Frame = 1
Query: 34 MVDVIRSSARVPEKKDCVTTMRTVKTAMMEKVSRLIQGEHVCITSDEWTSCANETYMSLTVTLITSAWKLVTLSMDCSKSEGTTTGDTLAVGIKAAVAKHGLTGKVTVVTTDCEPLMVKMGRLLE-EGNVCTHIGCCNHRLESIISIVFNGSGVKKVMVLARGLVTRYSTS 543
MV IR SARVPEKKDCVTTMRTVK MMEKVSRLI+GE VCITSD WTSCAN+TYMSLT TLITSAWKLVTLS+DCSKSEGTTTGD LA GIKA VAKHGLTGKVT VTTDCEP MVKMGRLL + V T IGCCN+RLES SIVFNG VKKVMVLARGLVTRY TS
Sbjct: 1 MVHAIRPSARVPEKKDCVTTMRTVKKCMMEKVSRLIEGEQVCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRLLAGDATVSTQIGCCNYRLESTSSIVFNGPRVKKVMVLARGLVTRYPTS 171
BLAST of mRNA_H-elongata_contig111804.959.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE) HSP 1 Score: 164 bits (415), Expect = 6.640e-44 Identity = 87/190 (45.79%), Postives = 119/190 (62.63%), Query Frame = 1
Query: 7 MLADKSFKGMVDVIRSSARVPEKKDCVTTMRTVKTAMMEKVSRLIQGEHVCITSDEWTSCANETYMSLTVTLITSAWKLVTLSMDCSKSEGTTTGDTLAVGIKAAVAKHGLTGKVTVVTTDCEPLMVKMGRLLEEGNVCTHIGCCNHRLESIISIVFNGSGVKKVMVLARGLVTRYSTSRHGNQVLVHMQ 576
M+ ++ F MV ++S A VP K+ + +R +K + ++V + GEHV +TSD WTS +N+TYM T T I+S + LV L ++C K G TTG+ L +KA +A++GLT + TTDCEP MVK GRLLEE TH+GC HRLESI S F G GV K + LAR +VTRY+ S + L M+
Sbjct: 1 MVENEHFIEMVRFLKSRATVPHKRLFLEKLRGMKKGLDQEVLGRLTGEHVAVTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARRVVTRYNMSSQASDRLEQMR 190
BLAST of mRNA_H-elongata_contig111804.959.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI) HSP 1 Score: 158 bits (399), Expect = 4.150e-41 Identity = 87/181 (48.07%), Postives = 115/181 (63.54%), Query Frame = 1
Query: 34 MVDVIRSSARVPEKKDCVTTMRTVKTAMMEKVSRLIQGEHVCITSDEWTSCANETYMSLTVTLITSAWKLVTLSMDCSKSEGTTTGDTLAVGIKAAVAKHGLTGKVTVVTTDCEPLMVKMGRLLE-EGNVCTHIGCCNHRLESIISIVFNGSGVKKVMVLARGLVTRYSTSRHGNQVLVHM 573
MV + A+VP +++ ++ MR VKTA+ +V+ ++ E V IT+D WTS NE+YMSLTV I WKL LS+DC+K GTTTG+ LA + V +H LTG+V TDCEP M+K GRLLE +G+ +HIGC NHR+ES S VFNG + + LAR LV RY S LV +
Sbjct: 1 MVSALNKRAKVPSRRELLSRMRAVKTALESEVALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRLLEVDGSTISHIGCSNHRMESTTSSVFNGRSLG-ALGLARTLVGRYKKSSQMAARLVQL 180
BLAST of mRNA_H-elongata_contig111804.959.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE) HSP 1 Score: 145 bits (365), Expect = 2.220e-36 Identity = 80/174 (45.98%), Postives = 108/174 (62.07%), Query Frame = 1
Query: 25 FKGMVDVIRSSARVPEKKDCVTTMRTVKTAMMEKVSRLIQGEHVCITSDEWTSCANETYMSLTVTLITSAWKLVTLSMDCSKSEGTTTGDTLAVGIKAAVAKHGLTGKVTVVTTDCEPLMVKMGRLLEEGNV-CTHIGCCNHRLESIISIVFNGSGVKKVMVLARGLVTRYSTS 543
F +V + AR P ++ V MR +K + +V+ ++ E+V IT+D WTS +NE+YMSLTV I W+L LS++C+K G+T G+ LA I + + +HGLTG+VT TDCEP MVK GRLLE G HIGC NHR+ES S VFNG + + AR +V RY S
Sbjct: 34 FHAVVSGLNKKARAPIRRALVEKMREIKKNLESEVALMLDDEYVAITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRLLEVGGSNLEHIGCSNHRMESTTSSVFNGKSLG-ALAKARAVVGRYKRS 206
BLAST of mRNA_H-elongata_contig111804.959.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 144 bits (363), Expect = 2.010e-35 Identity = 73/140 (52.14%), Postives = 92/140 (65.71%), Query Frame = 1
Query: 145 GEHVCITSDEWTSCANETYMSLTVTLITSAWKLVTLSMDCSKSEGTTTGDTLAVGIKAAVAKHGLTGKVTVVTTDCEPLMVKMGRLLEEGNVCTHIGCCNHRLESIISIVFNGSGVKKVMVLARGLVTRYSTSRHGNQVL 564
GEHV +TSD WT +N+TYMS T T I+S + LV L ++C K T G+ L +KA +A++GLTG+ +TTDCE MVK GRLLEE TH+GC HRLESI S F G GV K + LARG+VTRY+ S + L
Sbjct: 3 GEHVALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRLLEENEGVTHLGCFCHRLESITSQAFGGPGVSKALALARGVVTRYTISSQASDRL 142
BLAST of mRNA_H-elongata_contig111804.959.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE) HSP 1 Score: 125 bits (314), Expect = 5.040e-30 Identity = 64/131 (48.85%), Postives = 83/131 (63.36%), Query Frame = 1
Query: 181 SCANETYMSLTVTLITSAWKLVTLSMDCSKSEGTTTGDTLAVGIKAAVAKHGLTGKVTVVTTDCEPLMVKMGRLLEEGNVCTHIGCCNHRLESIISIVFNGSGVKKVMVLARGLVTRYSTSRHGNQVLVHM 573
S +N+TYM+ T T I+S + LV L ++ K G TTG+ L +KA +A++GLTG+ TTDCEP MVK GRLLEE +H+GC HR ESI S F G GV K + L RG+VTRY+ S + L M
Sbjct: 3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRLLEENEGVSHLGCFCHRFESITSQAFGGPGVSKALALPRGVVTRYTMSSQASNRLEQM 133
BLAST of mRNA_H-elongata_contig111804.959.1 vs. uniprot
Match: UPI00096AF313 (zinc finger BED domain-containing protein 1-like n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=UPI00096AF313) HSP 1 Score: 72.0 bits (175), Expect = 1.230e-10 Identity = 53/190 (27.89%), Postives = 84/190 (44.21%), Query Frame = 1
Query: 25 FKGMVDVIRSSARVPEKKDCVTTMRTV----KTAMMEKVSRLIQGEHVCITSDEWTSCANETYMSLTVTLITSAWKLVTLSMDCSKSEGTTTGDTLAVGIKAAVAKHGLT--GKVTVVTTDCEPLMVKMGRLLEEGNVCTHIGCCNHRLESIISIVFNGSGVKKVMVLARGLVTRYSTSRHGNQVLVHMQ 576
F +++ I ++P + +R K AMM+++ + TSD WTSCAN+ Y+SLT I S W+LV+ + S G TG + +K G ++ + D MV G +LEE C + C HRL+ I + S + + + A+ LVT + S + L Q
Sbjct: 142 FCALLNYIEPGYKIPSDTHIASVIRQKHEVGKRAMMQRLKN--ENAFTAFTSDIWTSCANDAYISLTAHFIDSDWQLVSCVLGSSPFPGHHTGSHIYEKLKDITHAFGFQQHSQLVALVHDAASNMVLSGEILEERLECASVCCAAHRLQLCIEDGLSVSAISRAVGAAKKLVTHFRHSALASDALKKKQ 329
BLAST of mRNA_H-elongata_contig111804.959.1 vs. uniprot
Match: A0A1X7UW18_AMPQE (BED-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UW18_AMPQE) HSP 1 Score: 72.0 bits (175), Expect = 1.330e-10 Identity = 53/190 (27.89%), Postives = 84/190 (44.21%), Query Frame = 1
Query: 25 FKGMVDVIRSSARVPEKKDCVTTMRTV----KTAMMEKVSRLIQGEHVCITSDEWTSCANETYMSLTVTLITSAWKLVTLSMDCSKSEGTTTGDTLAVGIKAAVAKHGLT--GKVTVVTTDCEPLMVKMGRLLEEGNVCTHIGCCNHRLESIISIVFNGSGVKKVMVLARGLVTRYSTSRHGNQVLVHMQ 576
F +++ I ++P + +R K AMM+++ + TSD WTSCAN+ Y+SLT I S W+LV+ + S G TG + +K G ++ + D MV G +LEE C + C HRL+ I + S + + + A+ LVT + S + L Q
Sbjct: 139 FCALLNYIEPGYKIPSDTHIASVIRQKHEVGKRAMMQRLKN--ENAFTAFTSDIWTSCANDAYISLTAHFIDSDWQLVSCVLGSSPFPGHHTGSHIYEKLKDITHAFGFQQHSQLVALVHDAASNMVLSGEILEERLECASVCCAAHRLQLCIEDGLSVSAISRAVGAAKKLVTHFRHSALASDALKKKQ 326
BLAST of mRNA_H-elongata_contig111804.959.1 vs. uniprot
Match: UPI001F4FE454 (E3 SUMO-protein ligase ZBED1-like n=6 Tax=Schistocerca TaxID=7008 RepID=UPI001F4FE454) HSP 1 Score: 67.8 bits (164), Expect = 3.170e-9 Identity = 47/155 (30.32%), Postives = 74/155 (47.74%), Query Frame = 1
Query: 7 MLADKSFKGMVDVIRSSARVPEKKDCVTTM-RTVKTAMMEKV-SRLIQGEHVCITSDEWTSCANETYMSLTVTLITSAWKLVTLSMDCSKSEGTTTGDTLAVGIKAAVAKHGLTGKVTVVTTDCEPLMVKMGRLLEEGNVCTHIGCCNHRLESII 465
++ D F+G V + +P +K M + TA EKV +L + VC+T+D WTS ANE YM++T ++ + L ++ + CS+ G T L+ + LT KV +V TD P + +L+ H GC H L I+
Sbjct: 129 VVEDSGFRGFVRALNPGYELPSRKHISDVMLQAAYTAAKEKVVDKLSAAKTVCLTTDCWTSAANEGYMAVTGHFVSEDFTLQSVLLGCSQLSGAHTAPNLSASLIGTTDNFRLTDKVLLVVTDNAPNIKNAVSILK----WKHFGCYAHTLNLIV 279
BLAST of mRNA_H-elongata_contig111804.959.1 vs. uniprot
Match: UPI00148AD8D1 (zinc finger BED domain-containing protein 1-like n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148AD8D1) HSP 1 Score: 66.2 bits (160), Expect = 9.440e-9 Identity = 51/172 (29.65%), Postives = 79/172 (45.93%), Query Frame = 1
Query: 67 PEKKDCVTTMRTVKTAMMEKVSRLI--QGEHVCITSDEWTSCANETYMSLTVTLITSAWKLVTLSMDCSKSEGTTTGDTLAVGIKAAVAKHGLTGKVTVVTTDCEPLMVKMGRLLEEGNVCTHIGCCNHRLESIISIVFNGSGVKKVMVLARGLVTRYSTSRHGNQVLVHMQ 576
P K + + M K M EKV+R + + + IT D W+SCA E+Y ++T ITSAW+L ++ + + +G+ T + +A G+K V+ L V TD K +L GC HR+ I+ V K++ R LV + S N L+ Q
Sbjct: 157 PTKHEILKLMNEKKIKMAEKVARDLPPKSGSIAITHDGWSSCATESYSTVTAHFITSAWELRSVVLHTHQVQGSHTSEKIADGLKETVSTWNLPDPTCV--TDNAANEKKAVEILG----WERSGCYGHRINLIVKHALEVPEVHKILSKCRKLVGHFHKSTSLNDCLIEKQ 322 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111804.959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig111804.959.1 >prot_H-elongata_contig111804.959.1 ID=prot_H-elongata_contig111804.959.1|Name=mRNA_H-elongata_contig111804.959.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=199bp MLADKSFKGMVDVIRSSARVPEKKDCVTTMRTVKTAMMEKVSRLIQGEHVback to top mRNA from alignment at H-elongata_contig111804:1164..2027- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig111804.959.1 ID=mRNA_H-elongata_contig111804.959.1|Name=mRNA_H-elongata_contig111804.959.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=864bp|location=Sequence derived from alignment at H-elongata_contig111804:1164..2027- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig111804:1164..2027- >mRNA_H-elongata_contig111804.959.1 ID=mRNA_H-elongata_contig111804.959.1|Name=mRNA_H-elongata_contig111804.959.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1194bp|location=Sequence derived from alignment at H-elongata_contig111804:1164..2027- (Himanthalia elongata Himel1 dioecious)back to top |