mRNA_H-elongata_contig111728.954.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111728.954.1
Unique NamemRNA_H-elongata_contig111728.954.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig111728.954.1 vs. uniprot
Match: D8LFI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI5_ECTSI)

HSP 1 Score: 423 bits (1088), Expect = 1.110e-137
Identity = 207/232 (89.22%), Postives = 220/232 (94.83%), Query Frame = 1 
Query:    1 VQDAFNKLREQIIICHQQPREHRGGLNMINNTNLEFFNFKQKAELFRLKGIFLSSLGAKQEANNAYSHAVQISGDFAKGWYSWARYCDGIFAEQTKVHCAVQAMACYLQAINHNSAGARLMMSRVLWLLSLDDDKSTLGRTLETYGKTLPEWVWIPWIPQLLTSLTRREAQHVTTLVKAISHKYPQSVYYTLRAFLLERREQPDR--SVAAAVDSSKLAKATTVRLQTGGTV 690
            VQDAFNKLREQIIICH+QPREHRGGLNMINNTNLEFFN KQKAELFRLKG+FL+SLGAKQEANNAYSHAVQISGDFAKGWYSWARYCDGIFAEQTKVHCAVQAMACYLQAINHNSAGARLMMSRVLWLLSLDD+KSTLGRTLETYG+TLPEWVWIPWIPQLLTSLTRREA +VTTLVKA+S +YPQSVYYT+RAFLLERREQPDR  S   A DS+KL KA +VRL +GGT+
Sbjct:  295 VQDAFNKLREQIIICHKQPREHRGGLNMINNTNLEFFNSKQKAELFRLKGVFLTSLGAKQEANNAYSHAVQISGDFAKGWYSWARYCDGIFAEQTKVHCAVQAMACYLQAINHNSAGARLMMSRVLWLLSLDDEKSTLGRTLETYGRTLPEWVWIPWIPQLLTSLTRREAHYVTTLVKALSQRYPQSVYYTMRAFLLERREQPDRGGSSTNAADSNKLPKAMSVRLPSGGTM 526
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BLAST of mRNA_H-elongata_contig111728.954.1 vs. uniprot
Match: A0A6H5KAF7_9PHAE (FAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF7_9PHAE)

HSP 1 Score: 422 bits (1084), Expect = 1.180e-132
Identity = 207/232 (89.22%), Postives = 219/232 (94.40%), Query Frame = 1 
Query:    1 VQDAFNKLREQIIICHQQPREHRGGLNMINNTNLEFFNFKQKAELFRLKGIFLSSLGAKQEANNAYSHAVQISGDFAKGWYSWARYCDGIFAEQTKVHCAVQAMACYLQAINHNSAGARLMMSRVLWLLSLDDDKSTLGRTLETYGKTLPEWVWIPWIPQLLTSLTRREAQHVTTLVKAISHKYPQSVYYTLRAFLLERREQPDR--SVAAAVDSSKLAKATTVRLQTGGTV 690
            VQDAFNKLREQIIICH+QPREHRGGLNMINNTNLEFFN KQKAELFRLKG+FL+SLGAKQEANNAYSHAVQISGDFAKGWYSWARYCDGIFAEQTKVHCAVQAMACYLQAINHNSAGARLMMSRVLWLLSLDD+KSTLGRTLETYG+TLPEWVWIPWIPQLLTSLTRREA +VT LVKA+S  YPQSVYYT+RAFLLERREQPDR  S A A DS+KL KA +VRL +GGT+
Sbjct: 2675 VQDAFNKLREQIIICHKQPREHRGGLNMINNTNLEFFNSKQKAELFRLKGVFLTSLGAKQEANNAYSHAVQISGDFAKGWYSWARYCDGIFAEQTKVHCAVQAMACYLQAINHNSAGARLMMSRVLWLLSLDDEKSTLGRTLETYGRTLPEWVWIPWIPQLLTSLTRREAHYVTALVKALSQMYPQSVYYTMRAFLLERREQPDRGGSSANAADSNKLPKAMSVRLPSGGTM 2906
[Close]
BLAST of mRNA_H-elongata_contig111728.954.1 vs. uniprot
Match: A0A835YW58_9STRA (FAT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW58_9STRA)

HSP 1 Score: 274 bits (700), Expect = 2.620e-81
Identity = 124/202 (61.39%), Postives = 160/202 (79.21%), Query Frame = 1 
Query:    4 QDAFNKLREQIIICHQQPREHRGGLNMINNTNLEFFNFKQKAELFRLKGIFLSSLGAKQEANNAYSHAVQISGDFAKGWYSWARYCDGIFAEQTKVHCAVQAMACYLQAINHNSAGARLMMSRVLWLLSLDDDKSTLGRTLETYGKTLPEWVWIPWIPQLLTSLTRREAQHVTTLVKAISHKYPQSVYYTLRAFLLERREQP 609
            QD F  LREQI++C      +RGGL++INN N+E F+ +QKAELFR+KG FL  LGA+ EAN A+SH++Q+SG+F KGWYSWA+ CD + AEQ KVHCA+Q+MACY+QA+ H    A+ M++RVLWLLS+DD+K TL R LETYG  LPE VW+PWIPQLL+SLTR EA  V +L+K I  K+PQ++YY++RAF+LERRE P
Sbjct:  454 QDKFELLREQILVCLSSAAHYRGGLHVINNVNMESFDSQQKAELFRMKGQFLHKLGARNEANAAFSHSLQVSGNFGKGWYSWAQCCDAVLAEQMKVHCAMQSMACYMQAVQHRCDSAKPMLARVLWLLSMDDEKFTLARALETYGANLPELVWVPWIPQLLSSLTRPEAPQVKSLLKKIISKFPQAIYYSMRAFVLERRELP 655
[Close]
BLAST of mRNA_H-elongata_contig111728.954.1 vs. uniprot
Match: A0A6G0X4V8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X4V8_9STRA)

HSP 1 Score: 255 bits (652), Expect = 1.370e-74
Identity = 113/201 (56.22%), Postives = 155/201 (77.11%), Query Frame = 1 
Query:    1 VQDAFNKLREQIIICHQQPREHRGGLNMINNTNLEFFNFKQKAELFRLKGIFLSSLGAKQEANNAYSHAVQISGDFAKGWYSWARYCDGIFAEQTKVHCAVQAMACYLQAINHNSAGARLMMSRVLWLLSLDDDKSTLGRTLETYGKTLPEWVWIPWIPQLLTSLTRREAQHVTTLVKAISHKYPQSVYYTLRAFLLERRE 603
            VQDAF+KLREQ+ ICH+  ++ +GGL+++N TNLE+F+ +QKAELFR+KG+FL +LG K EAN A+SH++QI   + KGW SW +YCD +F E+ ++  A Q +ACYLQA++H S  ARLM++RVLWLLS+D++K  L +  ET+GK LP W WI WIPQLL SL R EA  +  L++ +S K+PQ++YYT+RAF LE RE
Sbjct: 3547 VQDAFSKLREQLSICHETSKDFQGGLSILNQTNLEYFDIRQKAELFRMKGLFLDALGDKNEANKAFSHSLQICDSYGKGWLSWGQYCDKLFVERKEIEFAAQTIACYLQAVHHRSTYARLMLARVLWLLSMDNEKGVLIQAFETHGKQLPIWTWIVWIPQLLMSLCRPEAPQIRGLLRGLSAKFPQALYYTMRAFFLENRE 3747
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BLAST of mRNA_H-elongata_contig111728.954.1 vs. uniprot
Match: A0A485KK61_9STRA (Aste57867_8383 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KK61_9STRA)

HSP 1 Score: 254 bits (649), Expect = 3.460e-74
Identity = 112/201 (55.72%), Postives = 155/201 (77.11%), Query Frame = 1 
Query:    1 VQDAFNKLREQIIICHQQPREHRGGLNMINNTNLEFFNFKQKAELFRLKGIFLSSLGAKQEANNAYSHAVQISGDFAKGWYSWARYCDGIFAEQTKVHCAVQAMACYLQAINHNSAGARLMMSRVLWLLSLDDDKSTLGRTLETYGKTLPEWVWIPWIPQLLTSLTRREAQHVTTLVKAISHKYPQSVYYTLRAFLLERRE 603
            VQDAF+KLREQ+ IC++  ++ +GGL+++N TNLE+F+ +QKAELFR+KG+F+ +LG K EAN A+SH +QI   + KGW SW +YCD +F E+ ++  A Q +ACYLQA++H S  ARLM++RVLWLLS+D+DK  L +  ET+GK LP W+WI WIPQLL SL R EA  +  L++ +S K+PQ++YYT+RAF LE RE
Sbjct: 3592 VQDAFSKLREQVSICYETSKDFQGGLSILNQTNLEYFDTRQKAELFRMKGLFMDALGDKNEANQAFSHCLQICDSYGKGWLSWGQYCDKLFVERKEIEFAAQTIACYLQAVHHRSTYARLMLARVLWLLSMDNDKGVLIQAFETHGKQLPIWIWIVWIPQLLMSLCRPEAPQIRGLLRGLSAKFPQALYYTMRAFFLENRE 3792
[Close]
BLAST of mRNA_H-elongata_contig111728.954.1 vs. uniprot
Match: T0PY38_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PY38_SAPDV)

HSP 1 Score: 253 bits (647), Expect = 6.420e-74
Identity = 116/225 (51.56%), Postives = 166/225 (73.78%), Query Frame = 1 
Query:    1 VQDAFNKLREQIIICHQQPREHRGGLNMINNTNLEFFNFKQKAELFRLKGIFLSSLGAKQEANNAYSHAVQISGDFAKGWYSWARYCDGIFAEQTKVHCAVQAMACYLQAINHNSAGARLMMSRVLWLLSLDDDKSTLGRTLETYGKTLPEWVWIPWIPQLLTSLTRREAQHVTTLVKAISHKYPQSVYYTLRAFLLERRE----QPDRSVAAAVDSSKLAKATT 663
            VQDAF+KLREQ+ IC++  +E +GGL+++NNTNL++F+ +QKAELFRLKG+FL +LG K +AN A+SH++Q+   + KGW SW +YCD +F E+  +  A Q +ACYLQA++H S+ ARL ++RVLWLLS+D++K  L +  E +GK LP W+WI WIPQLL SL R EA  +  L++ +S K+PQ++YYT+RAF LE RE      D+ +A+A  +   + ATT
Sbjct: 3530 VQDAFSKLREQVSICYETTKEFKGGLSLLNNTNLDYFDARQKAELFRLKGLFLDALGDKSDANMAFSHSLQLCDSYGKGWLSWGQYCDALFTERKDLDFAAQTIACYLQAVHHRSSSARLYLARVLWLLSMDNEKGVLIQAFEAHGKQLPIWIWIVWIPQLLMSLCRPEAPQIRNLLRGLSAKFPQALYYTMRAFFLENRELLSMDKDKLLASAPPTPLASTATT 3754
[Close]
BLAST of mRNA_H-elongata_contig111728.954.1 vs. uniprot
Match: A0A1V9ZBZ5_9STRA (Phosphatidylinositol kinase (PIK-L3) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZBZ5_9STRA)

HSP 1 Score: 253 bits (645), Expect = 1.190e-73
Identity = 110/201 (54.73%), Postives = 154/201 (76.62%), Query Frame = 1 
Query:    1 VQDAFNKLREQIIICHQQPREHRGGLNMINNTNLEFFNFKQKAELFRLKGIFLSSLGAKQEANNAYSHAVQISGDFAKGWYSWARYCDGIFAEQTKVHCAVQAMACYLQAINHNSAGARLMMSRVLWLLSLDDDKSTLGRTLETYGKTLPEWVWIPWIPQLLTSLTRREAQHVTTLVKAISHKYPQSVYYTLRAFLLERRE 603
            VQDAF+KLREQ+ IC++  +E++GGL+++NNTNL++F+ +QKAELFRLKG+F+ +LG   +AN A+SH +Q+   + KGW SW RYCD +F E+ ++  A Q +ACYLQA++H S+ ARL ++RVLWLLS+D+D   L    ET+GK LP W+WI WIPQLL SL R EA  +  L++ +S K+PQ++YYT+RAF LE RE
Sbjct: 3535 VQDAFSKLREQVSICYETTKEYKGGLSLLNNTNLDYFDARQKAELFRLKGLFMEALGEMSDANQAFSHCLQLCDSYGKGWLSWGRYCDTLFNERKEIEFAAQTIACYLQAVHHRSSSARLYLARVLWLLSMDNDNGVLIHAFETHGKQLPIWIWIIWIPQLLMSLCRPEAPQIRGLLRGLSAKFPQALYYTMRAFFLENRE 3735
[Close]
BLAST of mRNA_H-elongata_contig111728.954.1 vs. uniprot
Match: A0A067D1L0_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D1L0_SAPPC)

HSP 1 Score: 251 bits (642), Expect = 3.010e-73
Identity = 110/201 (54.73%), Postives = 155/201 (77.11%), Query Frame = 1 
Query:    1 VQDAFNKLREQIIICHQQPREHRGGLNMINNTNLEFFNFKQKAELFRLKGIFLSSLGAKQEANNAYSHAVQISGDFAKGWYSWARYCDGIFAEQTKVHCAVQAMACYLQAINHNSAGARLMMSRVLWLLSLDDDKSTLGRTLETYGKTLPEWVWIPWIPQLLTSLTRREAQHVTTLVKAISHKYPQSVYYTLRAFLLERRE 603
            VQDAF+KLREQ+ IC++  +E +GGL+++NNTNL++F+ +QKAELFRLKG+FL +LG K +AN A+SH++Q+   + KGW SW +YCD +F E+  +  A Q +ACYLQA++H S+ ARL ++RVLWLLS+D++K  L +  E +GK LP W+WI WIPQLL SL R EA  +  L++ +S K+PQ++YYT+RAF LE RE
Sbjct: 3446 VQDAFSKLREQVSICYETTKEFKGGLSLLNNTNLDYFDARQKAELFRLKGLFLDALGDKSDANMAFSHSLQLCDSYGKGWLSWGQYCDALFTERKDLDFAAQTIACYLQAVHHRSSSARLYLARVLWLLSMDNEKGVLIQAFEAHGKQLPIWIWIIWIPQLLMSLCRPEAPQIRNLLRGLSAKFPQALYYTMRAFFLENRE 3646
[Close]
BLAST of mRNA_H-elongata_contig111728.954.1 vs. uniprot
Match: A0A024UM79_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UM79_9STRA)

HSP 1 Score: 249 bits (637), Expect = 1.420e-72
Identity = 111/201 (55.22%), Postives = 154/201 (76.62%), Query Frame = 1 
Query:    1 VQDAFNKLREQIIICHQQPREHRGGLNMINNTNLEFFNFKQKAELFRLKGIFLSSLGAKQEANNAYSHAVQISGDFAKGWYSWARYCDGIFAEQTKVHCAVQAMACYLQAINHNSAGARLMMSRVLWLLSLDDDKSTLGRTLETYGKTLPEWVWIPWIPQLLTSLTRREAQHVTTLVKAISHKYPQSVYYTLRAFLLERRE 603
            VQDAF+KLREQ+ IC++  ++++GG+ ++N TNLE+F+ +QKAELFR+KG+F+ +LG   EAN A+S  +QI   + KGW SW +YCD +FAE+  V  A Q +ACYLQA++H S+ ARLM++RVLWLLS+D+DK  L +  ET+GK LP W+WI WIPQLL SL R EA  +  L++ +S K+PQ++YYT+RAF LE RE
Sbjct: 3682 VQDAFSKLREQVSICYETSKDYQGGVTILNQTNLEYFDTRQKAELFRMKGLFMDALGDTHEANQAFSRCLQICDSYGKGWLSWGQYCDKLFAERMDVEFAAQTIACYLQAVHHRSSFARLMLARVLWLLSMDNDKCVLIQAFETHGKQLPIWIWIVWIPQLLMSLCRPEAPQIRGLLRGLSAKFPQALYYTMRAFFLENRE 3882
[Close]
BLAST of mRNA_H-elongata_contig111728.954.1 vs. uniprot
Match: A0A1V9ZEG8_9STRA (Phosphatidylinositol kinase (PIK-L3) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZEG8_9STRA)

HSP 1 Score: 246 bits (627), Expect = 3.120e-71
Identity = 107/201 (53.23%), Postives = 154/201 (76.62%), Query Frame = 1 
Query:    1 VQDAFNKLREQIIICHQQPREHRGGLNMINNTNLEFFNFKQKAELFRLKGIFLSSLGAKQEANNAYSHAVQISGDFAKGWYSWARYCDGIFAEQTKVHCAVQAMACYLQAINHNSAGARLMMSRVLWLLSLDDDKSTLGRTLETYGKTLPEWVWIPWIPQLLTSLTRREAQHVTTLVKAISHKYPQSVYYTLRAFLLERRE 603
            VQDAF+KLREQ+ IC++  +E +GGL+++NNTNL++F+ +QKAELFRLK +FL +LG K +AN A+SH +Q+   + KGW SW +YCD +++E+  +  A Q +AC+LQA++H S+ ARL ++RVLWLLS+D++   L +  ET+GK LP W+WI WIPQLL SL R EA  +  L++ +S K+PQ++YYT+RAF LE RE
Sbjct: 3545 VQDAFSKLREQVSICYETTKEFKGGLSLLNNTNLDYFDARQKAELFRLKALFLDALGDKTDANVAFSHCLQLCDSYGKGWLSWGQYCDALYSERGDIDFAAQTIACFLQAVHHRSSSARLYLARVLWLLSMDNENGVLIQAFETHGKQLPIWIWIVWIPQLLMSLCRPEAPQIRGLLRGLSAKFPQALYYTMRAFFLENRE 3745
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111728.954.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFI5_ECTSI1.110e-13789.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAF7_9PHAE1.180e-13289.22FAT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YW58_9STRA2.620e-8161.39FAT domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6G0X4V8_9STRA1.370e-7456.22Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485KK61_9STRA3.460e-7455.72Aste57867_8383 protein n=1 Tax=Aphanomyces stellat... [more]
T0PY38_SAPDV6.420e-7451.56Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A1V9ZBZ5_9STRA1.190e-7354.73Phosphatidylinositol kinase (PIK-L3) n=1 Tax=Thrau... [more]
A0A067D1L0_SAPPC3.010e-7354.73Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A024UM79_9STRA1.420e-7255.22Uncharacterized protein n=3 Tax=Aphanomyces invada... [more]
A0A1V9ZEG8_9STRA3.120e-7153.23Phosphatidylinositol kinase (PIK-L3) n=1 Tax=Achly... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111728contigH-elongata_contig111728:287..1538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score424.5
Seed ortholog evalue3.2e-116
Seed eggNOG ortholog2880.D8LFI5
KEGG koko:K08874
KEGG Pathwayko05166,map05166
GOsGO:0000123,GO:0000166,GO:0003674,GO:0003712,GO:0003824,GO:0004402,GO:0004672,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006464,GO:0006468,GO:0006473,GO:0006475,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008080,GO:0008144,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010556,GO:0016043,GO:0016301,GO:0016310,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016773,GO:0017076,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0030554,GO:0031248,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034212,GO:0034641,GO:0035267,GO:0035639,GO:0036094,GO:0036211,GO:0043167,GO:0043168,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051716,GO:0060255,GO:0061733,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140096,GO:0140110,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902493,GO:1902494,GO:1902562,GO:1903506,GO:1990234,GO:2001141
EggNOG free text desc.phosphatidylinositol kinase activity
EggNOG OGsCOG5032@1,KOG0889@2759
COG Functional cat.BDLTU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size690
Cds size690
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929640.4409776-CDS-H-elongata_contig111728:286..7891622929640.4409776-CDS-H-elongata_contig111728:286..789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111728 287..789 +
1691679101.906087-CDS-H-elongata_contig111728:286..7891691679101.906087-CDS-H-elongata_contig111728:286..789Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111728 287..789 +
1622929640.458555-CDS-H-elongata_contig111728:1351..15381622929640.458555-CDS-H-elongata_contig111728:1351..1538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111728 1352..1538 +
1691679101.9212308-CDS-H-elongata_contig111728:1351..15381691679101.9212308-CDS-H-elongata_contig111728:1351..1538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111728 1352..1538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111728.954.1prot_H-elongata_contig111728.954.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111728 287..1538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111728.954.1

>prot_H-elongata_contig111728.954.1 ID=prot_H-elongata_contig111728.954.1|Name=mRNA_H-elongata_contig111728.954.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=230bp
VQDAFNKLREQIIICHQQPREHRGGLNMINNTNLEFFNFKQKAELFRLKG
IFLSSLGAKQEANNAYSHAVQISGDFAKGWYSWARYCDGIFAEQTKVHCA
VQAMACYLQAINHNSAGARLMMSRVLWLLSLDDDKSTLGRTLETYGKTLP
EWVWIPWIPQLLTSLTRREAQHVTTLVKAISHKYPQSVYYTLRAFLLERR
EQPDRSVAAAVDSSKLAKATTVRLQTGGTV
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mRNA from alignment at H-elongata_contig111728:287..1538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111728.954.1 ID=mRNA_H-elongata_contig111728.954.1|Name=mRNA_H-elongata_contig111728.954.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1252bp|location=Sequence derived from alignment at H-elongata_contig111728:287..1538+ (Himanthalia elongata Himel1 dioecious)
GTCCAGGACGCGTTCAACAAGCTGCGTGAGCAGATCATCATTTGCCACCA
GCAGCCCCGCGAGCACCGAGGGGGGCTCAACATGATCAACAACACCAACC
TGGAATTTTTCAACTTCAAGCAGAAGGCCGAGCTCTTCCGCCTCAAGGGG
ATCTTTCTCAGCAGCCTAGGGGCCAAGCAGGAGGCCAACAACGCCTACAG
CCACGCGGTCCAGATCTCCGGAGACTTCGCTAAGGGGTGGTACTCGTGGG
CGCGATACTGCGACGGCATCTTCGCAGAGCAGACCAAAGTCCACTGCGCG
GTTCAGGCGATGGCTTGCTACCTCCAGGCTATAAACCACAACTCGGCGGG
TGCCCGTCTAATGATGTCTCGAGTACTGTGGCTGCTCAGCCTGGATGACG
ATAAGTCGACGTTGGGGCGCACGCTGGAGACGTACGGCAAGACTCTCCCG
GAGTGGGTCTGGATCCCGTGGATCCCGCAGCTTCTGACGTCACTCACCAG
GCGGTGAGGGCGACCGACCGATCGTCTTCCAAATAAACGCAAACTGTGTC
CTATTCCTATAAGGTTTAAAAATATTAACAGCATTAAAAGTAATCCCTCT
CACGACCCCCCCCCCCGATCCCTCTTCGATCAATGTTTGATCGTAACAAA
ATTATACATTTCTCTGAAATTTAAAATGAAAATTGATGTACCTCCGGCCG
ACTTAGGCTCTCAGCCAGCGCTACCGTCTTCGTCCTGATAGGCTTTTTCC
CCCCTTCCCCAATCTTGAGCCACTAGTTGGTTCCCTTGACTTCACTCTGG
CTGTAATAAAGTATACCAGGTATAGGATATATTATTATAGTGTCGATGTT
CGAAGGGTGTGATTGAGTTCATTTTTTTTTAATATATATATAAAAATACT
TTTAGTACGGCCAAGACCCACACTTCGAAACCATGGTTTGTAGAGAAGGC
AGTTCTTGTCCTTCCACAGTTTGCGTCTCACCCCCCTCCCCCCTTCGTAC
ACACGCTTTTCCTGTCCCCCATCCCCATTTCCCGTGAAACCCTTTGGAAC
TCCGTGGTCACGCAGGGAGGCTCAGCACGTGACGACTCTGGTGAAGGCCA
TCTCTCACAAGTACCCGCAGTCGGTGTACTACACCTTGAGGGCGTTTTTG
TTGGAGAGGCGCGAGCAGCCGGACAGGAGTGTCGCAGCCGCCGTGGACAG
CAGCAAGCTTGCGAAGGCTACAACGGTCCGCCTGCAAACAGGGGGAACGG
TA
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Coding sequence (CDS) from alignment at H-elongata_contig111728:287..1538+

>mRNA_H-elongata_contig111728.954.1 ID=mRNA_H-elongata_contig111728.954.1|Name=mRNA_H-elongata_contig111728.954.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1380bp|location=Sequence derived from alignment at H-elongata_contig111728:287..1538+ (Himanthalia elongata Himel1 dioecious)
GTCCAGGACGCGTTCAACAAGCTGCGTGAGCAGATCATCATTTGCCACCA
GCAGCCCCGCGAGCACCGAGGGGGGCTCAACATGATCAACAACACCAACC
TGGAATTTTTCAACTTCAAGCAGAAGGCCGAGCTCTTCCGCCTCAAGGGG
ATCTTTCTCAGCAGCCTAGGGGCCAAGCAGGAGGCCAACAACGCCTACAG
CCACGCGGTCCAGATCTCCGGAGACTTCGCTAAGGGGTGGTACTCGTGGG
CGCGATACTGCGACGGCATCTTCGCAGAGCAGACCAAAGTCCACTGCGCG
GTTCAGGCGATGGCTTGCTACCTCCAGGCTATAAACCACAACTCGGCGGG
TGCCCGTCTAATGATGTCTCGAGTACTGTGGCTGCTCAGCCTGGATGACG
ATAAGTCGACGTTGGGGCGCACGCTGGAGACGTACGGCAAGACTCTCCCG
GAGTGGGTCTGGATCCCGTGGATCCCGCAGCTTCTGACGTCACTCACCAG
GCGGTCCAGGACGCGTTCAACAAGCTGCGTGAGCAGATCATCATTTGCCA
CCAGCAGCCCCGCGAGCACCGAGGGGGGCTCAACATGATCAACAACACCA
ACCTGGAATTTTTCAACTTCAAGCAGAAGGCCGAGCTCTTCCGCCTCAAG
GGGATCTTTCTCAGCAGCCTAGGGGCCAAGCAGGAGGCCAACAACGCCTA
CAGCCACGCGGTCCAGATCTCCGGAGACTTCGCTAAGGGGTGGTACTCGT
GGGCGCGATACTGCGACGGCATCTTCGCAGAGCAGACCAAAGTCCACTGC
GCGGTTCAGGCGATGGCTTGCTACCTCCAGGCTATAAACCACAACTCGGC
GGGTGCCCGTCTAATGATGTCTCGAGTACTGTGGCTGCTCAGCCTGGATG
ACGATAAGTCGACGTTGGGGCGCACGCTGGAGACGTACGGCAAGACTCTC
CCGGAGTGGGTCTGGATCCCGTGGATCCCGCAGCTTCTGACGTCACTCAC
CAGGCGGGAGGCTCAGCACGTGACGACTCTGGTGAAGGCCATCTCTCACA
AGTACCCGCAGTCGGTGTACTACACCTTGAGGGCGTTTTTGTTGGAGAGG
CGCGAGCAGCCGGACAGGAGTGTCGCAGCCGCCGTGGACAGCAGCAAGCT
TGCGAAGGCTACAACGGTCCGCCTGCAAACAGGGGGAACGGTAGGAGGCT
CAGCACGTGACGACTCTGGTGAAGGCCATCTCTCACAAGTACCCGCAGTC
GGTGTACTACACCTTGAGGGCGTTTTTGTTGGAGAGGCGCGAGCAGCCGG
ACAGGAGTGTCGCAGCCGCCGTGGACAGCAGCAAGCTTGCGAAGGCTACA
ACGGTCCGCCTGCAAACAGGGGGAACGGTA
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