mRNA_H-elongata_contig111708.952.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111708.952.1
Unique NamemRNA_H-elongata_contig111708.952.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig111708.952.1 vs. uniprot
Match: D7FPC4_ECTSI (Ubiquitin activating enzyme E1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPC4_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 1.900e-23
Identity = 48/74 (64.86%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    1 QVLQGVPVEHHKNAFVNLAEPFVTFSEPLPAESVAGEGGEGEE--FSIWDKVIVDGAANMTVRGLISFLKSERG 216
            +++QG P+  HKN FVNLA PFV FSEPL AE + G  G G E  F+IWDKV+VDGAA++TVRGL+ FLKSERG
Sbjct:  520 KLIQGAPITDHKNGFVNLAAPFVAFSEPLEAEPIDGASGGGGEGGFTIWDKVVVDGAADLTVRGLVEFLKSERG 593          
BLAST of mRNA_H-elongata_contig111708.952.1 vs. uniprot
Match: A0A6H5KE41_9PHAE (UBA_e1_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE41_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 3.090e-22
Identity = 47/70 (67.14%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   13 GVPVEHHKNAFVNLAEPFVTFSEPLPAESVAGEGGEGEE--FSIWDKVIVDGAANMTVRGLISFLKSERG 216
            G P+  HKN FVNLA PFV FSEPL AE + G  G G E  F+IWDKV+VDGAA++TVRGL+ FLKSERG
Sbjct:  105 GAPITDHKNGFVNLAAPFVAFSEPLEAEPIDGASGGGGEGGFTIWDKVVVDGAADLTVRGLVEFLKSERG 174          
BLAST of mRNA_H-elongata_contig111708.952.1 vs. uniprot
Match: A0A835Z5W8_9STRA (UBA_e1_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5W8_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.380e-10
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = 1
Query:   34 KNAFVNLAEPFVTFSEPLPAESVAGEGGEGEEFSIWDKVIVDGAANMTVRGLISFLKSERG 216
            KNAFVNLAEPFV FSEP  AE      G    F++WD+  V GA ++T+RGL++ L+ E G
Sbjct: 1227 KNAFVNLAEPFVAFSEPAEAERAPWARGT---FTVWDRAAVRGARDLTLRGLLALLRREHG 1284          
BLAST of mRNA_H-elongata_contig111708.952.1 vs. uniprot
Match: A0A7S3UWT7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWT7_HETAK)

HSP 1 Score: 62.8 bits (151), Expect = 4.770e-10
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    1 QVLQGVPVEHHKNAFVNLAEPFVTFSEPLPAESVAGEGGEGEEFSIWDKVIVDG-AANMTVRGLISFLKSERG 216
            ++ QG P+E H+N FVNLAEPF+ FSEP PAE     G  G  F++WD+  V   AA +TV  L + L++  G
Sbjct:  157 KLAQGKPLEAHRNGFVNLAEPFLAFSEPAPAERTP-IGATGRSFTLWDRFEVAAPAAALTVGALCARLEAAFG 228          
BLAST of mRNA_H-elongata_contig111708.952.1 vs. uniprot
Match: B8C120_THAPS (Ubiquitin activating enzyme (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C120_THAPS)

HSP 1 Score: 63.5 bits (153), Expect = 4.780e-10
Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 1
Query:    1 QVLQGVPVEHHKNAFVNLAEPFVTFSEPLPAESVAGEGGEGEEFSIWDKVIVDGAAN-----MTVRGLISFLKSERG 216
            ++L+G+P+  H+NAFVN+A PF  F+ PLPAE VAG        +IWD+VIV G++      MT+R  +  +K   G
Sbjct:  865 KMLKGLPLNMHRNAFVNMALPFFAFTAPLPAEEVAGVNRSSH--TIWDRVIVKGSSKSPVGAMTLRTFLDKVKRSSG 939          
BLAST of mRNA_H-elongata_contig111708.952.1 vs. uniprot
Match: A0A7S3THA4_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3THA4_9SPIT)

HSP 1 Score: 58.2 bits (139), Expect = 3.800e-8
Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   13 GVPVEHHKNAFVNLAEPFVTFSEPLPAESVAGEGGEGEEFSIWDKVIVDGAANMTVRGLISFLKSE 210
            G P+E +KN FVNLA PF++FSEP+ A      G  G E+++WD+  VD    +T++  I F K +
Sbjct:  815 GKPLESYKNGFVNLALPFMSFSEPIAAPK-RKIGANGPEWTLWDRYEVDLGRELTLKEFIDFFKEK 879          
BLAST of mRNA_H-elongata_contig111708.952.1 vs. uniprot
Match: A0A7S0F7B5_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia arenysensis TaxID=697910 RepID=A0A7S0F7B5_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 5.210e-8
Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:    1 QVLQGVPVEHHKNAFVNLAEPFVTFSEPLPAESVAGEGGEGEEFSIWDKV 150
            +V QG+P+  H+NAF+NLA PF  F+ PLPAE    +G  GE  ++WDK+
Sbjct:  915 KVTQGLPLNRHRNAFINLALPFFAFTAPLPAEEY--QGVRGETHTLWDKI 962          
BLAST of mRNA_H-elongata_contig111708.952.1 vs. uniprot
Match: R1FAV3_EMIHU (UBA_e1_C domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FAV3_EMIHU)

HSP 1 Score: 54.7 bits (130), Expect = 6.360e-7
Identity = 25/64 (39.06%), Postives = 40/64 (62.50%), Query Frame = 1
Query:   19 PVEHHKNAFVNLAEPFVTFSEPLPAESVAGEGGEGEEFSIWDKVIVDGAANMTVRGLISFLKSE 210
            P+E  KN FVNLA PFV+FSEP+ A      G +G E+++WD+  VD    +T++  +++ +  
Sbjct:  877 PIESFKNGFVNLALPFVSFSEPIAAPK-RKIGAKGAEWTLWDRYEVDEGRELTLKEFLAYFQER 939          
BLAST of mRNA_H-elongata_contig111708.952.1 vs. uniprot
Match: W7T9G4_9STRA (Ubiquitin activating enzyme e1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9G4_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 9.860e-7
Identity = 27/67 (40.30%), Postives = 43/67 (64.18%), Query Frame = 1
Query:   19 PVEHHKNAFVNLAEPFVTFSEPLP-AESVAGEGGEGEEFSIWDKVIVDGAANMTVRGLISFLKSERG 216
            P+E  K+AFVNLA P  TFSEP P A   A   GE  ++S WD++ ++G  ++T+R  + +++ + G
Sbjct:   22 PIEDFKSAFVNLALPLFTFSEPQPPASQTAVVKGEEWKWSAWDRIDIEG--DLTLREFLKYMEEQFG 86          
BLAST of mRNA_H-elongata_contig111708.952.1 vs. uniprot
Match: A5DLS9_PICGU (Ubiquitin-activating enzyme E1 1 n=3 Tax=Meyerozyma TaxID=766728 RepID=A5DLS9_PICGU)

HSP 1 Score: 53.9 bits (128), Expect = 1.190e-6
Identity = 28/71 (39.44%), Postives = 45/71 (63.38%), Query Frame = 1
Query:    4 VLQGVPVEHHKNAFVNLAEPFVTFSEPLPAESVAGEGGEGEEFSIWDKVIVDGAANMTVRGLISFLKSERG 216
            V +   +EH+KN FVNLA PFV FSEP+ +      G E +  SIWD+  ++G  ++T++ L+ +  +E+G
Sbjct:  876 VAKDTNIEHYKNGFVNLALPFVGFSEPISSPKGKYNGVEFD--SIWDRFEIEG--DITLQELLDYFANEKG 942          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111708.952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPC4_ECTSI1.900e-2364.86Ubiquitin activating enzyme E1 n=1 Tax=Ectocarpus ... [more]
A0A6H5KE41_9PHAE3.090e-2267.14UBA_e1_C domain-containing protein n=1 Tax=Ectocar... [more]
A0A835Z5W8_9STRA1.380e-1052.46UBA_e1_C domain-containing protein n=1 Tax=Tribone... [more]
A0A7S3UWT7_HETAK4.770e-1046.58Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
B8C120_THAPS4.780e-1042.86Ubiquitin activating enzyme (Fragment) n=1 Tax=Tha... [more]
A0A7S3THA4_9SPIT3.800e-842.42Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S0F7B5_9STRA5.210e-850.00Hypothetical protein n=1 Tax=Pseudo-nitzschia aren... [more]
R1FAV3_EMIHU6.360e-739.06UBA_e1_C domain-containing protein n=2 Tax=Emilian... [more]
W7T9G4_9STRA9.860e-740.30Ubiquitin activating enzyme e1 n=1 Tax=Nannochloro... [more]
A5DLS9_PICGU1.190e-639.44Ubiquitin-activating enzyme E1 1 n=3 Tax=Meyerozym... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111708contigH-elongata_contig111708:45..263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue1.5e-19
Seed eggNOG ortholog2880.D7FPC4
Preferred nameINTS1
KEGG koko:K03178,ko:K13138
KEGG Pathwayko04120,ko05012,map04120,map05012
GOsGO:0000428,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009301,GO:0009790,GO:0009792,GO:0009892,GO:0009987,GO:0010466,GO:0010467,GO:0010605,GO:0010941,GO:0010951,GO:0016070,GO:0016073,GO:0016180,GO:0016591,GO:0018130,GO:0019222,GO:0019438,GO:0030162,GO:0030880,GO:0031123,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032039,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034470,GO:0034472,GO:0034474,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040007,GO:0042795,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043154,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043281,GO:0043628,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045861,GO:0046483,GO:0048519,GO:0048523,GO:0048589,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0052547,GO:0052548,GO:0055029,GO:0060255,GO:0060548,GO:0061695,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234,GO:2000116,GO:2000117
EggNOG free text desc.U2 snRNA 3'-end processing
EggNOG OGsCOG0476@1,KOG2012@2759,KOG4596@1,KOG4596@2759
Ec32 ortholog descriptionMolybdenum cofactor biosynthesis, MoeB
Ec32 orthologEc-15_003920.2
EC6.2.1.45
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041,ko04121,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929640.3039443-CDS-H-elongata_contig111708:44..2631622929640.3039443-CDS-H-elongata_contig111708:44..263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111708 45..263 +
1691679101.8588097-CDS-H-elongata_contig111708:44..2631691679101.8588097-CDS-H-elongata_contig111708:44..263Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111708 45..263 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111708.952.1prot_H-elongata_contig111708.952.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111708 45..263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111708.952.1

>prot_H-elongata_contig111708.952.1 ID=prot_H-elongata_contig111708.952.1|Name=mRNA_H-elongata_contig111708.952.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
QVLQGVPVEHHKNAFVNLAEPFVTFSEPLPAESVAGEGGEGEEFSIWDKV
IVDGAANMTVRGLISFLKSERG*
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mRNA from alignment at H-elongata_contig111708:45..263+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111708.952.1 ID=mRNA_H-elongata_contig111708.952.1|Name=mRNA_H-elongata_contig111708.952.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at H-elongata_contig111708:45..263+ (Himanthalia elongata Himel1 dioecious)
CAGGTGTTGCAAGGCGTACCCGTGGAGCACCACAAGAACGCCTTCGTGAA CCTGGCAGAACCCTTCGTAACCTTCTCAGAGCCCCTACCGGCAGAGTCTG TCGCGGGAGAAGGAGGGGAGGGGGAGGAGTTTTCGATTTGGGACAAAGTC ATCGTGGACGGCGCGGCGAACATGACCGTGCGGGGCCTGATTTCGTTCTT GAAGAGCGAGAGAGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig111708:45..263+

>mRNA_H-elongata_contig111708.952.1 ID=mRNA_H-elongata_contig111708.952.1|Name=mRNA_H-elongata_contig111708.952.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig111708:45..263+ (Himanthalia elongata Himel1 dioecious)
CAGGTGTTGCAAGGCGTACCCGTGGAGCACCACAAGAACGCCTTCGTGAA
CCTGGCAGAACCCTTCGTAACCTTCTCAGAGCCCCTACCGGCAGAGTCTG
TCGCGGGAGAAGGAGGGGAGGGGGAGGAGTTTTCGATTTGGGACAAAGTC
ATCGTGGACGGCGCGGCGAACATGACCGTGCGGGGCCTGATTTCGTTCTT
GAAGAGCGAGAGAGGGTGACAGGTGTTGCAAGGCGTACCCGTGGAGCACC
ACAAGAACGCCTTCGTGAACCTGGCAGAACCCTTCGTAACCTTCTCAGAG
CCCCTACCGGCAGAGTCTGTCGCGGGAGAAGGAGGGGAGGGGGAGGAGTT
TTCGATTTGGGACAAAGTCATCGTGGACGGCGCGGCGAACATGACCGTGC
GGGGCCTGATTTCGTTCTTGAAGAGCGAGAGAGGGTGA
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