mRNA_H-elongata_contig111708.952.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig111708.952.1 vs. uniprot
Match: D7FPC4_ECTSI (Ubiquitin activating enzyme E1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPC4_ECTSI) HSP 1 Score: 101 bits (252), Expect = 1.900e-23 Identity = 48/74 (64.86%), Postives = 58/74 (78.38%), Query Frame = 1
Query: 1 QVLQGVPVEHHKNAFVNLAEPFVTFSEPLPAESVAGEGGEGEE--FSIWDKVIVDGAANMTVRGLISFLKSERG 216
+++QG P+ HKN FVNLA PFV FSEPL AE + G G G E F+IWDKV+VDGAA++TVRGL+ FLKSERG
Sbjct: 520 KLIQGAPITDHKNGFVNLAAPFVAFSEPLEAEPIDGASGGGGEGGFTIWDKVVVDGAADLTVRGLVEFLKSERG 593
BLAST of mRNA_H-elongata_contig111708.952.1 vs. uniprot
Match: A0A6H5KE41_9PHAE (UBA_e1_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE41_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 3.090e-22 Identity = 47/70 (67.14%), Postives = 54/70 (77.14%), Query Frame = 1
Query: 13 GVPVEHHKNAFVNLAEPFVTFSEPLPAESVAGEGGEGEE--FSIWDKVIVDGAANMTVRGLISFLKSERG 216
G P+ HKN FVNLA PFV FSEPL AE + G G G E F+IWDKV+VDGAA++TVRGL+ FLKSERG
Sbjct: 105 GAPITDHKNGFVNLAAPFVAFSEPLEAEPIDGASGGGGEGGFTIWDKVVVDGAADLTVRGLVEFLKSERG 174
BLAST of mRNA_H-elongata_contig111708.952.1 vs. uniprot
Match: A0A835Z5W8_9STRA (UBA_e1_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5W8_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 1.380e-10 Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = 1
Query: 34 KNAFVNLAEPFVTFSEPLPAESVAGEGGEGEEFSIWDKVIVDGAANMTVRGLISFLKSERG 216
KNAFVNLAEPFV FSEP AE G F++WD+ V GA ++T+RGL++ L+ E G
Sbjct: 1227 KNAFVNLAEPFVAFSEPAEAERAPWARGT---FTVWDRAAVRGARDLTLRGLLALLRREHG 1284
BLAST of mRNA_H-elongata_contig111708.952.1 vs. uniprot
Match: A0A7S3UWT7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWT7_HETAK) HSP 1 Score: 62.8 bits (151), Expect = 4.770e-10 Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 1
Query: 1 QVLQGVPVEHHKNAFVNLAEPFVTFSEPLPAESVAGEGGEGEEFSIWDKVIVDG-AANMTVRGLISFLKSERG 216
++ QG P+E H+N FVNLAEPF+ FSEP PAE G G F++WD+ V AA +TV L + L++ G
Sbjct: 157 KLAQGKPLEAHRNGFVNLAEPFLAFSEPAPAERTP-IGATGRSFTLWDRFEVAAPAAALTVGALCARLEAAFG 228
BLAST of mRNA_H-elongata_contig111708.952.1 vs. uniprot
Match: B8C120_THAPS (Ubiquitin activating enzyme (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C120_THAPS) HSP 1 Score: 63.5 bits (153), Expect = 4.780e-10 Identity = 33/77 (42.86%), Postives = 48/77 (62.34%), Query Frame = 1
Query: 1 QVLQGVPVEHHKNAFVNLAEPFVTFSEPLPAESVAGEGGEGEEFSIWDKVIVDGAAN-----MTVRGLISFLKSERG 216
++L+G+P+ H+NAFVN+A PF F+ PLPAE VAG +IWD+VIV G++ MT+R + +K G
Sbjct: 865 KMLKGLPLNMHRNAFVNMALPFFAFTAPLPAEEVAGVNRSSH--TIWDRVIVKGSSKSPVGAMTLRTFLDKVKRSSG 939
BLAST of mRNA_H-elongata_contig111708.952.1 vs. uniprot
Match: A0A7S3THA4_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3THA4_9SPIT) HSP 1 Score: 58.2 bits (139), Expect = 3.800e-8 Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 1
Query: 13 GVPVEHHKNAFVNLAEPFVTFSEPLPAESVAGEGGEGEEFSIWDKVIVDGAANMTVRGLISFLKSE 210
G P+E +KN FVNLA PF++FSEP+ A G G E+++WD+ VD +T++ I F K +
Sbjct: 815 GKPLESYKNGFVNLALPFMSFSEPIAAPK-RKIGANGPEWTLWDRYEVDLGRELTLKEFIDFFKEK 879
BLAST of mRNA_H-elongata_contig111708.952.1 vs. uniprot
Match: A0A7S0F7B5_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia arenysensis TaxID=697910 RepID=A0A7S0F7B5_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 5.210e-8 Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query: 1 QVLQGVPVEHHKNAFVNLAEPFVTFSEPLPAESVAGEGGEGEEFSIWDKV 150
+V QG+P+ H+NAF+NLA PF F+ PLPAE +G GE ++WDK+
Sbjct: 915 KVTQGLPLNRHRNAFINLALPFFAFTAPLPAEEY--QGVRGETHTLWDKI 962
BLAST of mRNA_H-elongata_contig111708.952.1 vs. uniprot
Match: R1FAV3_EMIHU (UBA_e1_C domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FAV3_EMIHU) HSP 1 Score: 54.7 bits (130), Expect = 6.360e-7 Identity = 25/64 (39.06%), Postives = 40/64 (62.50%), Query Frame = 1
Query: 19 PVEHHKNAFVNLAEPFVTFSEPLPAESVAGEGGEGEEFSIWDKVIVDGAANMTVRGLISFLKSE 210
P+E KN FVNLA PFV+FSEP+ A G +G E+++WD+ VD +T++ +++ +
Sbjct: 877 PIESFKNGFVNLALPFVSFSEPIAAPK-RKIGAKGAEWTLWDRYEVDEGRELTLKEFLAYFQER 939
BLAST of mRNA_H-elongata_contig111708.952.1 vs. uniprot
Match: W7T9G4_9STRA (Ubiquitin activating enzyme e1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9G4_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 9.860e-7 Identity = 27/67 (40.30%), Postives = 43/67 (64.18%), Query Frame = 1
Query: 19 PVEHHKNAFVNLAEPFVTFSEPLP-AESVAGEGGEGEEFSIWDKVIVDGAANMTVRGLISFLKSERG 216
P+E K+AFVNLA P TFSEP P A A GE ++S WD++ ++G ++T+R + +++ + G
Sbjct: 22 PIEDFKSAFVNLALPLFTFSEPQPPASQTAVVKGEEWKWSAWDRIDIEG--DLTLREFLKYMEEQFG 86
BLAST of mRNA_H-elongata_contig111708.952.1 vs. uniprot
Match: A5DLS9_PICGU (Ubiquitin-activating enzyme E1 1 n=3 Tax=Meyerozyma TaxID=766728 RepID=A5DLS9_PICGU) HSP 1 Score: 53.9 bits (128), Expect = 1.190e-6 Identity = 28/71 (39.44%), Postives = 45/71 (63.38%), Query Frame = 1
Query: 4 VLQGVPVEHHKNAFVNLAEPFVTFSEPLPAESVAGEGGEGEEFSIWDKVIVDGAANMTVRGLISFLKSERG 216
V + +EH+KN FVNLA PFV FSEP+ + G E + SIWD+ ++G ++T++ L+ + +E+G
Sbjct: 876 VAKDTNIEHYKNGFVNLALPFVGFSEPISSPKGKYNGVEFD--SIWDRFEIEG--DITLQELLDYFANEKG 942 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111708.952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig111708.952.1 >prot_H-elongata_contig111708.952.1 ID=prot_H-elongata_contig111708.952.1|Name=mRNA_H-elongata_contig111708.952.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp QVLQGVPVEHHKNAFVNLAEPFVTFSEPLPAESVAGEGGEGEEFSIWDKVback to top mRNA from alignment at H-elongata_contig111708:45..263+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig111708.952.1 ID=mRNA_H-elongata_contig111708.952.1|Name=mRNA_H-elongata_contig111708.952.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at H-elongata_contig111708:45..263+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig111708:45..263+ >mRNA_H-elongata_contig111708.952.1 ID=mRNA_H-elongata_contig111708.952.1|Name=mRNA_H-elongata_contig111708.952.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig111708:45..263+ (Himanthalia elongata Himel1 dioecious)back to top |