mRNA_H-elongata_contig111633.947.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111633.947.1
Unique NamemRNA_H-elongata_contig111633.947.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig111633.947.1 vs. uniprot
Match: A0A6H5KG36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG36_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 8.470e-7
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   28 GHVPGVGSRSSTRCSPLDLLEMATVITATPKSQVA 132
            GHVPGVGSRSSTRCSPLD LE  TV+T  PKSQ A
Sbjct:  828 GHVPGVGSRSSTRCSPLDFLEAPTVVT--PKSQTA 860
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111633.947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KG36_9PHAE8.470e-780.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111633contigH-elongata_contig111633:150..365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size218
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929639.149723-CDS-H-elongata_contig111633:149..3651622929639.149723-CDS-H-elongata_contig111633:149..365Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111633 150..365 +
1691679101.4254036-CDS-H-elongata_contig111633:149..3651691679101.4254036-CDS-H-elongata_contig111633:149..365Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111633 150..365 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111633.947.1prot_H-elongata_contig111633.947.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111633 150..365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111633.947.1

>prot_H-elongata_contig111633.947.1 ID=prot_H-elongata_contig111633.947.1|Name=mRNA_H-elongata_contig111633.947.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
GSSALFPFFGHVPGVGSRSSTRCSPLDLLEMATVITATPKSQVAANDSSE
MAATGEASAASVEATEARTEGA
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mRNA from alignment at H-elongata_contig111633:150..365+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111633.947.1 ID=mRNA_H-elongata_contig111633.947.1|Name=mRNA_H-elongata_contig111633.947.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig111633:150..365+ (Himanthalia elongata Himel1 dioecious)
GGCTCGTCGGCGCTGTTTCCGTTCTTTGGGCATGTACCGGGAGTAGGGTC
CCGCAGCAGCACGCGCTGCTCTCCCCTTGACTTGCTGGAGATGGCAACCG
TCATTACAGCGACTCCCAAGTCACAGGTGGCGGCGAACGACTCATCGGAG
ATGGCTGCCACGGGGGAAGCATCCGCCGCGAGCGTCGAGGCAACGGAGGC
TCGGACAGAGGGTGCC
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Coding sequence (CDS) from alignment at H-elongata_contig111633:150..365+

>mRNA_H-elongata_contig111633.947.1 ID=mRNA_H-elongata_contig111633.947.1|Name=mRNA_H-elongata_contig111633.947.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig111633:150..365+ (Himanthalia elongata Himel1 dioecious)
GGCTCGTCGGCGCTGTTTCCGTTCTTTGGGCATGTACCGGGAGTAGGGTC
CCGCAGCAGCACGCGCTGCTCTCCCCTTGACTTGCTGGAGATGGCAACCG
TCATTACAGCGACTCCCAAGTCACAGGTGGCGGCGAACGACTCATCGGAG
ATGGCTGCCACGGGGGAAGCATCCGCCGCGAGCGTCGAGGCAACGGAGGC
TCGGACAGAGGGTGCCGGCTCGTCGGCGCTGTTTCCGTTCTTTGGGCATG
TACCGGGAGTAGGGTCCCGCAGCAGCACGCGCTGCTCTCCCCTTGACTTG
CTGGAGATGGCAACCGTCATTACAGCGACTCCCAAGTCACAGGTGGCGGC
GAACGACTCATCGGAGATGGCTGCCACGGGGGAAGCATCCGCCGCGAGCG
TCGAGGCAACGGAGGCTCGGACAGAGGGTGCC
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