mRNA_H-elongata_contig111616.946.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111616.946.1
Unique NamemRNA_H-elongata_contig111616.946.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111616.946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111616contigH-elongata_contig111616:1285..2085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size775
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111616.946.1prot_H-elongata_contig111616.946.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111616 1519..1949 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929638.9927611-UTR-H-elongata_contig111616:1284..15181622929638.9927611-UTR-H-elongata_contig111616:1284..1518Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig111616 1285..1518 -
1691679101.3728964-UTR-H-elongata_contig111616:1284..15181691679101.3728964-UTR-H-elongata_contig111616:1284..1518Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig111616 1285..1518 -
1622929639.043947-UTR-H-elongata_contig111616:1949..20851622929639.043947-UTR-H-elongata_contig111616:1949..2085Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig111616 1950..2085 -
1691679101.4088602-UTR-H-elongata_contig111616:1949..20851691679101.4088602-UTR-H-elongata_contig111616:1949..2085Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig111616 1950..2085 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929639.0101762-CDS-H-elongata_contig111616:1518..16061622929639.0101762-CDS-H-elongata_contig111616:1518..1606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111616 1519..1606 -
1691679101.3845606-CDS-H-elongata_contig111616:1518..16061691679101.3845606-CDS-H-elongata_contig111616:1518..1606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111616 1519..1606 -
1622929639.0271535-CDS-H-elongata_contig111616:1632..19491622929639.0271535-CDS-H-elongata_contig111616:1632..1949Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111616 1633..1949 -
1691679101.3969934-CDS-H-elongata_contig111616:1632..19491691679101.3969934-CDS-H-elongata_contig111616:1632..1949Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111616 1633..1949 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111616.946.1

>prot_H-elongata_contig111616.946.1 ID=prot_H-elongata_contig111616.946.1|Name=mRNA_H-elongata_contig111616.946.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
MFIRSPTIALISTIDVLKSTTIALISTIDVLKSTTIALIYTKVLLKPLTN
YIISTINALISTTSVIISTTNTYSNDTGTNEQASWTPRVVIPCLFRTSDL
WTHQPGFLHIPSAMLVIFFSSREKDLAVPLPRRP*
back to top

mRNA from alignment at H-elongata_contig111616:1285..2085-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111616.946.1 ID=mRNA_H-elongata_contig111616.946.1|Name=mRNA_H-elongata_contig111616.946.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=801bp|location=Sequence derived from alignment at H-elongata_contig111616:1285..2085- (Himanthalia elongata Himel1 dioecious)
TTGTCGCATTCGCTGAAAGCGTGTAAATATATATTTCAAAAATAATGTCA
CTACTTTACTTATTTTCTGTCGCCCATTCCAACAGCCTAGATTATTTTCC
CCATTCGAACTACCAGCGTCTATTATATCCACCACCATGTTTATTCGATC
CCCCACCATTGCCCTTATATCCACCATCGATGTCCTTAAATCCACCACCA
TTGCCCTTATATCCACCATCGATGTCCTTAAATCCACCACCATTGCCCTT
ATCTACACCAAAGTGTTATTAAAACCCCTCACCAATTATATTATATCCAC
CATCAATGCCCTGATATCCACCACCAGCGTCATTATATCCACCACCAATA
CGTACAGTAATGACACTGGAACAAACGAGCAAGCATCGTGGACCCCACGT
GTTGTTATCCCATGTTTATTCCGTACGTCAGACTTGTGGACGCACCAGCC
GGGGTCACACAGGAGGAAAGCCACACAAGATTTCTCCATATTCCTTCTGC
GATGCTTGTCATATTTTTTTCATCGCGAGAAAAAGACTTAGCCGTCCCTC
TCCCTCGTCGACCGTGAATAGTATACTGGATATAGTATGTCGAATTTTGT
GAACCTACTAAATAATCGTTCTCAACTTGTTGGGCATGATGTCAGAGAAA
ATCCCAGCTCATGGGACTGCGCCGAGATTCGAACTCACGTCCCAACTTCA
ACGGGTTTCGAGGTTATCGACTAAACCATCGGGGCGACTGCAGGTGCCGG
GTTGAAGAGACCTTAAGCCTCTAACTATTAATAACACGCTACACTACCAC
T
back to top

Coding sequence (CDS) from alignment at H-elongata_contig111616:1285..2085-

>mRNA_H-elongata_contig111616.946.1 ID=mRNA_H-elongata_contig111616.946.1|Name=mRNA_H-elongata_contig111616.946.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig111616:1285..2085- (Himanthalia elongata Himel1 dioecious)
ATGTTTATTCGATCCCCCACCATTGCCCTTATATCCACCATCGATGTCCT
TAAATCCACCACCATTGCCCTTATATCCACCATCGATGTCCTTAAATCCA
CCACCATTGCCCTTATCTACACCAAAGTGTTATTAAAACCCCTCACCAAT
TATATTATATCCACCATCAATGCCCTGATATCCACCACCAGCGTCATTAT
ATCCACCACCAATACGTACAGTAATGACACTGGAACAAACGAGCAAGCAT
CGTGGACCCCACGTGTTGTTATCCCATGTTTATTCCGTACGTCAGACTTG
TGGACGCACCAGCCGGGATGTTTATTCGATCCCCCACCATTGCCCTTATA
TCCACCATCGATGTCCTTAAATCCACCACCATTGCCCTTATATCCACCAT
CGATGTCCTTAAATCCACCACCATTGCCCTTATCTACACCAAAGTGTTAT
TAAAACCCCTCACCAATTATATTATATCCACCATCAATGCCCTGATATCC
ACCACCAGCGTCATTATATCCACCACCAATACGTACAGTAATGACACTGG
AACAAACGAGCAAGCATCGTGGACCCCACGTGTTGTTATCCCATGTTTAT
TCCGTACGTCAGACTTGTGGACGCACCAGCCGGGATTTCTCCATATTCCT
TCTGCGATGCTTGTCATATTTTTTTCATCGCGAGAAAAAGACTTAGCCGT
CCCTCTCCCTCGTCGACCGTGAATTTCTCCATATTCCTTCTGCGATGCTT
GTCATATTTTTTTCATCGCGAGAAAAAGACTTAGCCGTCCCTCTCCCTCG
TCGACCGTGA
back to top