mRNA_H-elongata_contig111576.944.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111576.944.1
Unique NamemRNA_H-elongata_contig111576.944.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig111576.944.1 vs. uniprot
Match: D7G3L9_ECTSI (Monooxygenase, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3L9_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 2.440e-37
Identity = 67/95 (70.53%), Postives = 78/95 (82.11%), Query Frame = 1
Query:    1 VIMQPGVVEAAERGVYDHRVPAFKRLTPTGVAWDEAE--------AEVDVIIWCTGYRANTSHLSRLGVVREDSTVAMDPRDVGETDVPGVFAVG 261
            +IMQPGV+EAAERGVYD RVP   RLTPTGVAW+ +E        A+VD IIWCTGYR+NTSHLSRLG+VR +STV MD R++GET+VPGVFAVG
Sbjct:  315 IIMQPGVIEAAERGVYDQRVPKLARLTPTGVAWEASEDGSIPGGHADVDAIIWCTGYRSNTSHLSRLGLVRPNSTVGMDGREMGETEVPGVFAVG 409          
BLAST of mRNA_H-elongata_contig111576.944.1 vs. uniprot
Match: A0A1G6U214_9PSED (Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD n=4 Tax=Pseudomonas TaxID=286 RepID=A0A1G6U214_9PSED)

HSP 1 Score: 70.9 bits (172), Expect = 1.830e-12
Identity = 34/72 (47.22%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    1 VIMQPGVVEAAERGVYDHRVPAFKRLTPTGVAW-DEAEAEVDVIIWCTGYRANTSHLSRLGVVREDSTVAMD 213
            V+M P VVEA ERGV  H V  F+R T  GV W D  ++EVDV+IWCTG++    HL+ LG++ ++  + +D
Sbjct:  239 VVMVPPVVEARERGVL-HAVRPFQRFTRDGVVWPDGMQSEVDVVIWCTGFKPALEHLASLGLITDEGRIEVD 309          
BLAST of mRNA_H-elongata_contig111576.944.1 vs. uniprot
Match: A0A646MLB4_ACILW (NAD(P)/FAD-dependent oxidoreductase n=28 Tax=Proteobacteria TaxID=1224 RepID=A0A646MLB4_ACILW)

HSP 1 Score: 69.7 bits (169), Expect = 4.670e-12
Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = 1
Query:    1 VIMQPGVVEAAERGVYDHRVPAFKRLTPTGVAWDEAE-AEVDVIIWCTGYRANTSHLSRLGVVREDSTVAMDPRDVGETDVPGVFAVG 261
            ++M   V +A ERG+   R P F   T  GV W++   A VDV+IWCTG++A  +HLS LG+++ D T+A+  ++     VP ++ VG
Sbjct:  238 IVMIDSVKDARERGILQSRRP-FSAFTEHGVIWEDGSTAHVDVVIWCTGFKAALNHLSSLGIIQPDQTIAV--QNGRSVQVPNLWLVG 322          
BLAST of mRNA_H-elongata_contig111576.944.1 vs. uniprot
Match: A0A4R7VVN6_9PSEU (Pyridine nucleotide-disulfide oxidoreductase n=2 Tax=Actinophytocola oryzae TaxID=502181 RepID=A0A4R7VVN6_9PSEU)

HSP 1 Score: 68.6 bits (166), Expect = 1.230e-11
Identity = 41/86 (47.67%), Postives = 49/86 (56.98%), Query Frame = 1
Query:    7 MQPGVVEAAERGVYDHRVPAFKRLTPTGVAW-DEAEAEVDVIIWCTGYRANTSHLSRLGVVREDSTVAMDPRDVGETDVPGVFAVG 261
            + P VVEA  RG+   R P F RL PTGVAW D A  +VDVI+WCTG+RA   HL+ LG+      + MD   V     P V  VG
Sbjct:  243 LTPEVVEARHRGLLARR-PMFDRLVPTGVAWADGATLDVDVILWCTGWRAALEHLAPLGLRGPGGGIVMDGTRV--VTEPRVHLVG 325          
BLAST of mRNA_H-elongata_contig111576.944.1 vs. uniprot
Match: A0A1I1S3T5_9ACTN (Pyridine nucleotide-disulphide oxidoreductase n=5 Tax=Klenkia TaxID=2183612 RepID=A0A1I1S3T5_9ACTN)

HSP 1 Score: 68.2 bits (165), Expect = 1.610e-11
Identity = 38/76 (50.00%), Postives = 47/76 (61.84%), Query Frame = 1
Query:   19 VVEAAERGVYDHRVPAFKRLTPTGVAWDEAEAE--VDVIIWCTGYRANTSHLSRL-------GVVREDSTVAMDPR 219
            V  A ERGV D R PAF R+TPTGVAWD+   E  VDV++W TG+RA   HL+ L       G+V E + V  +PR
Sbjct:  237 VRRARERGVLDRR-PAFDRMTPTGVAWDDPAGELAVDVVLWATGFRAALDHLAPLHLRAPGGGIVVEGTRVVAEPR 311          
BLAST of mRNA_H-elongata_contig111576.944.1 vs. uniprot
Match: D6Z8D5_SEGRD (Flavin-containing monooxygenase FMO n=2 Tax=Segniliparus rotundus TaxID=286802 RepID=D6Z8D5_SEGRD)

HSP 1 Score: 67.0 bits (162), Expect = 4.640e-11
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    1 VIMQPGVVEAAERGVYDHRVPAFKRLTPTGVAWDEA-EAEVDVIIWCTGYRANTSHLSRLGVVREDSTVAMDPR 219
            ++  P + EA  RGV + R+P F+RLTP+G  W++    +VDVI+WCTG+RAN  HL+ LG+      +A+  R
Sbjct:  260 LVWTPQLREAEARGVLE-RLPMFQRLTPSGAQWEDCTRVDVDVILWCTGFRANLGHLAPLGLRSPGGGIALTGR 332          
BLAST of mRNA_H-elongata_contig111576.944.1 vs. uniprot
Match: UPI00094E8DDC (uncharacterized protein LOC109534505 n=1 Tax=Dendroctonus ponderosae TaxID=77166 RepID=UPI00094E8DDC)

HSP 1 Score: 65.1 bits (157), Expect = 1.500e-10
Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = 1
Query:   10 QPGVVEAAERGVYDHRVPAFKRLTPTGVAWDEAE-AEVDVIIWCTGYRANTSHLSRLGVVREDSTVAM 210
            Q  V +A ERG+   R P F   T  GV W++   A VDV+IWCTG++A  +HLS LG+++ D T+A+
Sbjct:  132 QQEVKDARERGILQSRRP-FSAFTEHGVIWEDGSTAHVDVVIWCTGFKAALNHLSSLGIIQPDQTIAV 198          
BLAST of mRNA_H-elongata_contig111576.944.1 vs. uniprot
Match: UPI0018156BC9 (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Nonomuraea sp. TaxID=1883105 RepID=UPI0018156BC9)

HSP 1 Score: 64.7 bits (156), Expect = 2.900e-10
Identity = 36/77 (46.75%), Postives = 47/77 (61.04%), Query Frame = 1
Query:   13 PGVVEAAERGVYDHRVPAFKRLTPTGVAWDEAE-AEVDVIIWCTGYRANTSHLSRL-------GVVREDSTVAMDPR 219
            P V+ A E+G  D R+P F R+TP GVAW   E AEVDVIIW TG+R+   HL+RL       G+  + + V  +PR
Sbjct:  240 PVVLSALEKGALD-RLPMFARITPGGVAWASGETAEVDVIIWATGFRSALDHLARLRLREPGGGIKLDGTRVVKEPR 315          
BLAST of mRNA_H-elongata_contig111576.944.1 vs. uniprot
Match: A0A0L8K9X7_STRVR (Pyridine nucleotide-disulfide oxidoreductase n=4 Tax=Streptomyces TaxID=1883 RepID=A0A0L8K9X7_STRVR)

HSP 1 Score: 64.7 bits (156), Expect = 2.990e-10
Identity = 35/75 (46.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:    7 MQPGVVEAAERGVYDHRVPAFKRLTPTGVAWDEAE-AEVDVIIWCTGYRANTSHLSRL------GVVREDSTVAM 210
            +   + +A ERG+ D R+P F R+TPTGVAWD+   A+VDVI+W TG+RA   HL+ L      G VR + T A+
Sbjct:  247 LNDAIRDARERGILD-RLPMFDRITPTGVAWDDGRTADVDVILWATGFRAAIDHLTPLRLREPGGGVRVEGTRAV 320          
BLAST of mRNA_H-elongata_contig111576.944.1 vs. uniprot
Match: A0A837ZZY9_9MYCO (NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Mycobacteroides sp. LB1 TaxID=2750814 RepID=A0A837ZZY9_9MYCO)

HSP 1 Score: 64.7 bits (156), Expect = 3.000e-10
Identity = 33/70 (47.14%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   13 PGVVEAAERGVYDHRVPAFKRLTPTGVAW-DEAEAEVDVIIWCTGYRANTSHLSRLGVVREDSTVAMDPR 219
            P + EA++RGV   R P F R+TPTGVAW D +  +VDVI+WCTG+R    HLS L +      + M  R
Sbjct:  255 PDIAEASQRGVLARR-PMFTRITPTGVAWPDGSSLDVDVILWCTGFRHALDHLSPLRLRNSRGGITMTGR 323          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111576.944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3L9_ECTSI2.440e-3770.53Monooxygenase, putative n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1G6U214_9PSED1.830e-1247.22Predicted flavoprotein CzcO associated with the ca... [more]
A0A646MLB4_ACILW4.670e-1239.77NAD(P)/FAD-dependent oxidoreductase n=28 Tax=Prote... [more]
A0A4R7VVN6_9PSEU1.230e-1147.67Pyridine nucleotide-disulfide oxidoreductase n=2 T... [more]
A0A1I1S3T5_9ACTN1.610e-1150.00Pyridine nucleotide-disulphide oxidoreductase n=5 ... [more]
D6Z8D5_SEGRD4.640e-1143.24Flavin-containing monooxygenase FMO n=2 Tax=Segnil... [more]
UPI00094E8DDC1.500e-1045.59uncharacterized protein LOC109534505 n=1 Tax=Dendr... [more]
UPI0018156BC92.900e-1046.75NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Nonomu... [more]
A0A0L8K9X7_STRVR2.990e-1046.67Pyridine nucleotide-disulfide oxidoreductase n=4 T... [more]
A0A837ZZY9_9MYCO3.000e-1047.14NAD(P)/FAD-dependent oxidoreductase n=1 Tax=Mycoba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111576contigH-elongata_contig111576:1534..1866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.1
Seed ortholog evalue3.8e-30
Seed eggNOG ortholog2880.D7G3L9
EggNOG free text desc.N,N-dimethylaniline monooxygenase activity
EggNOG OGsCOG2072@1,KOG1399@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111576.944.1prot_H-elongata_contig111576.944.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111576 1540..1866 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929638.8231504-UTR-H-elongata_contig111576:1533..15391622929638.8231504-UTR-H-elongata_contig111576:1533..1539Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig111576 1534..1539 +
1691679101.2989755-UTR-H-elongata_contig111576:1533..15391691679101.2989755-UTR-H-elongata_contig111576:1533..1539Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig111576 1534..1539 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929638.83877-CDS-H-elongata_contig111576:1539..16351622929638.83877-CDS-H-elongata_contig111576:1539..1635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111576 1540..1635 +
1691679101.3080668-CDS-H-elongata_contig111576:1539..16351691679101.3080668-CDS-H-elongata_contig111576:1539..1635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111576 1540..1635 +
1622929638.8569865-CDS-H-elongata_contig111576:1704..18661622929638.8569865-CDS-H-elongata_contig111576:1704..1866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111576 1705..1866 +
1691679101.3156455-CDS-H-elongata_contig111576:1704..18661691679101.3156455-CDS-H-elongata_contig111576:1704..1866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111576 1705..1866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111576.944.1

>prot_H-elongata_contig111576.944.1 ID=prot_H-elongata_contig111576.944.1|Name=mRNA_H-elongata_contig111576.944.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
MQPGVVEAAERGVYDHRVPAFKRLTPTGVAWDEAEAEVDVIIWCTGYRAN
TSHLSRLGVVREDSTVAMDPRDVGETDVPGVFAVG*
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mRNA from alignment at H-elongata_contig111576:1534..1866+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111576.944.1 ID=mRNA_H-elongata_contig111576.944.1|Name=mRNA_H-elongata_contig111576.944.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=333bp|location=Sequence derived from alignment at H-elongata_contig111576:1534..1866+ (Himanthalia elongata Himel1 dioecious)
GTGATCATGCAGCCCGGAGTGGTGGAAGCGGCTGAGCGGGGGGTCTACGA TCACCGCGTCCCCGCTTTCAAGCGCTTGACGCCCACGGGGGTGGCATGGG ACGTGCCTCACTGCTCTCCCTCCTCCCAAACGCCGCCTGTCAACGACGAC GGAGGCGTTACATCCGCCGAGGAGGCGGAAGCGGAGGTTGACGTGATAAT ATGGTGCACCGGCTACCGGGCGAACACGTCGCACCTGTCGCGTCTGGGCG TGGTACGGGAGGACTCCACCGTAGCGATGGACCCCAGGGATGTAGGCGAA ACCGACGTTCCGGGAGTGTTCGCGGTCGGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig111576:1534..1866+

>mRNA_H-elongata_contig111576.944.1 ID=mRNA_H-elongata_contig111576.944.1|Name=mRNA_H-elongata_contig111576.944.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig111576:1534..1866+ (Himanthalia elongata Himel1 dioecious)
ATGCAGCCCGGAGTGGTGGAAGCGGCTGAGCGGGGGGTCTACGATCACCG
CGTCCCCGCTTTCAAGCGCTTGACGCCCACGGGGGTGGCATGGGACATGC
AGCCCGGAGTGGTGGAAGCGGCTGAGCGGGGGGTCTACGATCACCGCGTC
CCCGCTTTCAAGCGCTTGACGCCCACGGGGGTGGCATGGGACGAGGCGGA
AGCGGAGGTTGACGTGATAATATGGTGCACCGGCTACCGGGCGAACACGT
CGCACCTGTCGCGTCTGGGCGTGGTACGGGAGGACTCCACCGTAGCGATG
GACCCCAGGGATGTAGGCGAAACCGACGTTCCGGGAGTGTTCGCGGTCGG
GTGAGAGGCGGAAGCGGAGGTTGACGTGATAATATGGTGCACCGGCTACC
GGGCGAACACGTCGCACCTGTCGCGTCTGGGCGTGGTACGGGAGGACTCC
ACCGTAGCGATGGACCCCAGGGATGTAGGCGAAACCGACGTTCCGGGAGT
GTTCGCGGTCGGGTGA
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