mRNA_H-elongata_contig111442.936.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111442.936.1
Unique NamemRNA_H-elongata_contig111442.936.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig111442.936.1 vs. uniprot
Match: D7FHT8_ECTSI (Pseudouridylate synthase 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHT8_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 5.020e-34
Identity = 63/78 (80.77%), Postives = 70/78 (89.74%), Query Frame = 1 
Query:  454 GAHVTEIDYCRMLNRVLPPDIRALAWAPVTEGFSARFSCSDRT-RYFFLARDLDIKAMDAAASRIVGEHDFRNLCKIG 684
            G  VTEIDYC +LNRVLPP +R LAWAPVTEGFSARFSCSDRT RYFF+ARD+D+KAM+ AAS+IVG HDFRNLCKIG
Sbjct:  366 GGEVTEIDYCGILNRVLPPGVRTLAWAPVTEGFSARFSCSDRTYRYFFMARDMDVKAMNEAASKIVGSHDFRNLCKIG 443
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BLAST of mRNA_H-elongata_contig111442.936.1 vs. uniprot
Match: A0A6H5JEX6_9PHAE (PseudoU_synth_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX6_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 2.230e-32
Identity = 63/77 (81.82%), Postives = 70/77 (90.91%), Query Frame = 1 
Query:  454 GAHVTEIDYCRMLNRVLPPDIRALAWAPVTEGFSARFSCSDRT-RYFFLARDLDIKAMDAAASRIVGEHDFRNLCKI 681
            G  +TEIDYC +LNRVLPP IRALAWAPVTEGFSARFSCSDRT RYFF+ARD++IKAM+ AAS+IVG HDFRNLCKI
Sbjct:  375 GGEITEIDYCGILNRVLPPGIRALAWAPVTEGFSARFSCSDRTYRYFFMARDMNIKAMNEAASKIVGSHDFRNLCKI 451
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BLAST of mRNA_H-elongata_contig111442.936.1 vs. uniprot
Match: K7EAA9_ORNAN (Pseudouridine synthase 3 n=2 Tax=Monotremata TaxID=9255 RepID=K7EAA9_ORNAN)

HSP 1 Score: 107 bits (267), Expect = 3.130e-23
Identity = 52/79 (65.82%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:  448 RTGAHVTEIDYCRMLNRVLPPDIRALAWAPVTEGFSARFSCSDRT-RYFFLARDLDIKAMDAAASRIVGEHDFRNLCKI 681
            R  A   EI Y  +LNRVLPPDIR LAWAPV  GFSARF+C  RT RYFF   DLD++AMD AA + VG HDFRNLCK+
Sbjct:  147 RMDARTAEIRYTHILNRVLPPDIRVLAWAPVGSGFSARFNCLQRTYRYFFPRADLDLEAMDRAAQKYVGTHDFRNLCKM 225
[Close]
BLAST of mRNA_H-elongata_contig111442.936.1 vs. uniprot
Match: A0A7K6TLG9_9AVES (PUS3 synthase (Fragment) n=1 Tax=Aegotheles bennettii TaxID=48278 RepID=A0A7K6TLG9_9AVES)

HSP 1 Score: 106 bits (265), Expect = 3.640e-23
Identity = 53/77 (68.83%), Postives = 57/77 (74.03%), Query Frame = 1 
Query:  454 GAHVTEIDYCRMLNRVLPPDIRALAWAPVTEGFSARFSCSDRT-RYFFLARDLDIKAMDAAASRIVGEHDFRNLCKI 681
            G+   E+ Y  MLNRVLPPDIRALAWAPV   FSARFSC  RT RYFF   DLD+  MDAAA R VG HDFRNLCK+
Sbjct:  141 GSGGEELRYTHMLNRVLPPDIRALAWAPVEPRFSARFSCLSRTYRYFFPRADLDVALMDAAAQRFVGTHDFRNLCKM 217
[Close]
BLAST of mRNA_H-elongata_contig111442.936.1 vs. uniprot
Match: A0A2I0TCL3_LIMLA (tRNA pseudouridine synthase n=1 Tax=Limosa lapponica baueri TaxID=1758121 RepID=A0A2I0TCL3_LIMLA)

HSP 1 Score: 104 bits (260), Expect = 1.190e-22
Identity = 51/72 (70.83%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:  469 EIDYCRMLNRVLPPDIRALAWAPVTEGFSARFSCSDRT-RYFFLARDLDIKAMDAAASRIVGEHDFRNLCKI 681
            E+ Y  +LNRVLPPDIRALAWAPV   FSARFSC  RT RYFF   DLD+  MDAAA R VG HDFRNLCK+
Sbjct:   65 ELRYTHILNRVLPPDIRALAWAPVEPDFSARFSCLQRTYRYFFPCADLDVALMDAAAQRYVGTHDFRNLCKM 136
[Close]
BLAST of mRNA_H-elongata_contig111442.936.1 vs. uniprot
Match: A0A7L4DBW5_9AVES (PUS3 synthase (Fragment) n=2 Tax=Coraciiformes TaxID=8936 RepID=A0A7L4DBW5_9AVES)

HSP 1 Score: 105 bits (261), Expect = 1.350e-22
Identity = 51/72 (70.83%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:  469 EIDYCRMLNRVLPPDIRALAWAPVTEGFSARFSCSDRT-RYFFLARDLDIKAMDAAASRIVGEHDFRNLCKI 681
            E+ Y  +LNRVLPPDIRALAWAPV  GFSARFSC  RT RYFF   DLD+  M+AAA R VG HDFRNLCK+
Sbjct:  163 ELRYTHILNRVLPPDIRALAWAPVEPGFSARFSCLKRTYRYFFPCADLDVDLMNAAAQRYVGTHDFRNLCKM 234
[Close]
BLAST of mRNA_H-elongata_contig111442.936.1 vs. uniprot
Match: K7G5U2_PELSI (PseudoU_synth_1 domain-containing protein n=13 Tax=Testudines TaxID=8459 RepID=K7G5U2_PELSI)

HSP 1 Score: 105 bits (262), Expect = 1.430e-22
Identity = 51/79 (64.56%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:  448 RTGAHVTEIDYCRMLNRVLPPDIRALAWAPVTEGFSARFSCSDRT-RYFFLARDLDIKAMDAAASRIVGEHDFRNLCKI 681
            +T +   EI Y  +LNRVLPPDIR LAWAPV   FSARFSC  RT RYFF   DLD+  MDAAA + VG HDFRNLCK+
Sbjct:  156 KTSSSANEIRYTHILNRVLPPDIRVLAWAPVEPSFSARFSCLKRTYRYFFPRADLDVTLMDAAAQKYVGTHDFRNLCKM 234
[Close]
BLAST of mRNA_H-elongata_contig111442.936.1 vs. uniprot
Match: A0A851D926_TODME (tRNA pseudouridine synthase (Fragment) n=1 Tax=Todus mexicanus TaxID=135184 RepID=A0A851D926_TODME)

HSP 1 Score: 103 bits (257), Expect = 1.510e-22
Identity = 50/72 (69.44%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:  469 EIDYCRMLNRVLPPDIRALAWAPVTEGFSARFSCSDRT-RYFFLARDLDIKAMDAAASRIVGEHDFRNLCKI 681
            E+ Y  +LNRVLPPDIRALAWAPV   FSARFSC  RT RYFF   DLD++ M+AAA R VG HDFRNLCK+
Sbjct:   38 ELRYTHILNRVLPPDIRALAWAPVEPSFSARFSCLKRTYRYFFPCADLDVELMNAAAQRYVGTHDFRNLCKM 109
[Close]
BLAST of mRNA_H-elongata_contig111442.936.1 vs. uniprot
Match: A0A7K7WVJ4_9AVES (PUS3 synthase (Fragment) n=8 Tax=Tinamidae TaxID=8803 RepID=A0A7K7WVJ4_9AVES)

HSP 1 Score: 104 bits (260), Expect = 1.630e-22
Identity = 54/83 (65.06%), Postives = 57/83 (68.67%), Query Frame = 1 
Query:  436 EEAVRTGAHVTEIDYCRMLNRVLPPDIRALAWAPVTEGFSARFSCSDRT-RYFFLARDLDIKAMDAAASRIVGEHDFRNLCKI 681
            EE  R      E+ Y  MLNRVLPPDIR LAWAPV   FSARFSC  RT RYFF A  LD+  MDAAA R VG HDFRNLCK+
Sbjct:  140 EELARGECTRGELRYAHMLNRVLPPDIRVLAWAPVEAAFSARFSCLRRTYRYFFPAAGLDVALMDAAAQRFVGTHDFRNLCKM 222
[Close]
BLAST of mRNA_H-elongata_contig111442.936.1 vs. uniprot
Match: A0A7L0EUA4_TROML (PUS3 synthase (Fragment) n=1 Tax=Trogon melanurus TaxID=56311 RepID=A0A7L0EUA4_TROML)

HSP 1 Score: 104 bits (260), Expect = 2.170e-22
Identity = 51/72 (70.83%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:  469 EIDYCRMLNRVLPPDIRALAWAPVTEGFSARFSCSDRT-RYFFLARDLDIKAMDAAASRIVGEHDFRNLCKI 681
            E+ Y  +LNRVLPPDIRALAWAPV   FSARFSC  RT RYFF   DLD+  MDAAA R VG HDFRNLCK+
Sbjct:  159 ELRYTHILNRVLPPDIRALAWAPVAPDFSARFSCLKRTYRYFFPCADLDVALMDAAAQRYVGTHDFRNLCKM 230
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111442.936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHT8_ECTSI5.020e-3480.77Pseudouridylate synthase 3 n=1 Tax=Ectocarpus sili... [more]
A0A6H5JEX6_9PHAE2.230e-3281.82PseudoU_synth_1 domain-containing protein n=1 Tax=... [more]
K7EAA9_ORNAN3.130e-2365.82Pseudouridine synthase 3 n=2 Tax=Monotremata TaxID... [more]
A0A7K6TLG9_9AVES3.640e-2368.83PUS3 synthase (Fragment) n=1 Tax=Aegotheles bennet... [more]
A0A2I0TCL3_LIMLA1.190e-2270.83tRNA pseudouridine synthase n=1 Tax=Limosa lapponi... [more]
A0A7L4DBW5_9AVES1.350e-2270.83PUS3 synthase (Fragment) n=2 Tax=Coraciiformes Tax... [more]
K7G5U2_PELSI1.430e-2264.56PseudoU_synth_1 domain-containing protein n=13 Tax... [more]
A0A851D926_TODME1.510e-2269.44tRNA pseudouridine synthase (Fragment) n=1 Tax=Tod... [more]
A0A7K7WVJ4_9AVES1.630e-2265.06PUS3 synthase (Fragment) n=8 Tax=Tinamidae TaxID=8... [more]
A0A7L0EUA4_TROML2.170e-2270.83PUS3 synthase (Fragment) n=1 Tax=Trogon melanurus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111442contigH-elongata_contig111442:1053..2004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.4
Seed ortholog evalue2.1e-30
Seed eggNOG ortholog2880.D7FHT8
Preferred namePUS3
KEGG koko:K01855
GOsGO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016556,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360,GO:1990481
EggNOG free text desc.mRNA pseudouridine synthesis
EggNOG OGsCOG0101@1,KOG2554@2759
EC5.4.99.45
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Exons2
Model size708
Cds size708
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929638.1245399-CDS-H-elongata_contig111442:1052..11791622929638.1245399-CDS-H-elongata_contig111442:1052..1179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111442 1053..1179 -
1691679101.0607483-CDS-H-elongata_contig111442:1052..11791691679101.0607483-CDS-H-elongata_contig111442:1052..1179Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111442 1053..1179 -
1622929638.1492074-CDS-H-elongata_contig111442:1423..20041622929638.1492074-CDS-H-elongata_contig111442:1423..2004Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111442 1424..2004 -
1691679101.0718532-CDS-H-elongata_contig111442:1423..20041691679101.0718532-CDS-H-elongata_contig111442:1423..2004Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111442 1424..2004 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111442.936.1prot_H-elongata_contig111442.936.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111442 1053..2004 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111442.936.1

>prot_H-elongata_contig111442.936.1 ID=prot_H-elongata_contig111442.936.1|Name=mRNA_H-elongata_contig111442.936.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=236bp
VITVSVRSNFPKDLDTEVPTSPLGSLWIPNNRNTTAGDNANCSVNPEPEN
LREQGGAIACCPAKADSVEDNPETVRGARDCSGREQNGGWVVDPEGSLDC
GGGDDGGKGGDGRGQKVIEDGCSKSGASVESSPTSLEQQPKVKRKEEAVR
TGAHVTEIDYCRMLNRVLPPDIRALAWAPVTEGFSARFSCSDRTRYFFLA
RDLDIKAMDAAASRIVGEHDFRNLCKIGELTPCPS*
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mRNA from alignment at H-elongata_contig111442:1053..2004-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111442.936.1 ID=mRNA_H-elongata_contig111442.936.1|Name=mRNA_H-elongata_contig111442.936.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=952bp|location=Sequence derived from alignment at H-elongata_contig111442:1053..2004- (Himanthalia elongata Himel1 dioecious)
GTTATCACGGTGTCAGTGCGGTCCAACTTTCCGAAAGATCTGGACACGGA
AGTGCCGACTTCGCCGTTGGGGTCGCTGTGGATACCGAATAATCGCAACA
CAACCGCCGGTGATAACGCCAACTGTAGTGTAAACCCGGAGCCCGAAAAT
CTCCGGGAACAAGGAGGAGCTATTGCATGTTGTCCCGCGAAGGCTGACAG
CGTCGAGGACAATCCAGAAACGGTCCGCGGCGCGCGCGATTGTTCCGGGC
GTGAACAAAACGGCGGATGGGTCGTCGACCCCGAGGGTTCTCTAGATTGT
GGAGGGGGGGACGACGGGGGCAAGGGCGGGGATGGGCGGGGGCAAAAAGT
TATAGAGGACGGCTGTAGCAAAAGTGGCGCTTCGGTCGAGAGTTCGCCGA
CAAGCTTGGAGCAGCAGCCGAAGGTGAAAAGGAAGGAGGAGGCGGTGCGA
ACTGGCGCCCACGTGACTGAAATTGACTACTGTCGCATGCTCAACCGGGT
GCTGCCCCCGGACATTCGCGCGCTCGCGTGGGCGCCCGTAACGGAGGGGT
TCAGTGCCCGGTTCAGCTGTTCCGACAGGACGTACAGGCGAGAGAAGCTA
GGTTGAGCGATGGACCCGGCGTTTTAGATAAGGGGGGAGGGGGGGGGGTA
GCCATTTAGCGGTACCAAGATAGAGCTATATATGCCACCATATTTCTTCA
GTTTACAGCCTCTCTTGAATTCGCCTGACATATCTCAAGCCAAAAACAAC
GCAGCCGGGTCACCTACCACCTCTGTTTGCGTGGGTGGATGCAAAATTTA
CCACCTTACGCCGCCCGGCGGGTAGCAGGTACTTTTTCTTGGCGAGGGAT
CTGGACATCAAGGCCATGGATGCCGCGGCCTCACGCATCGTGGGGGAACA
CGACTTCAGAAACCTCTGCAAGATAGGCGAGTTGACCCCTTGCCCTTCTT
GA
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Coding sequence (CDS) from alignment at H-elongata_contig111442:1053..2004-

>mRNA_H-elongata_contig111442.936.1 ID=mRNA_H-elongata_contig111442.936.1|Name=mRNA_H-elongata_contig111442.936.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1416bp|location=Sequence derived from alignment at H-elongata_contig111442:1053..2004- (Himanthalia elongata Himel1 dioecious)
GTTATCACGGTGTCAGTGCGGTCCAACTTTCCGAAAGATCTGGACACGGA
AGTGCCGACTTCGCCGTTGGGGTCGCTGTGGATACCGAATAATCGCAACA
CAACCGCCGGTGATAACGCCAACTGTAGTGTAAACCCGGAGCCCGAAAAT
CTCCGGGAACAAGGAGGAGCTATTGCATGTTGTCCCGCGAAGGCTGACAG
CGTCGAGGACAATCCAGAAACGGTCCGCGGCGCGCGCGATTGTTCCGGGC
GTGAACAAAACGGCGGATGGGTCGTCGACCCCGAGGGTTCTCTAGATTGT
GGAGGGGGGGACGACGGGGGCAAGGGCGGGGATGGGCGGGGGCAAAAAGT
TATAGAGGACGGCTGTAGCAAAAGTGGCGCTTCGGTCGAGAGTTCGCCGA
CAAGCTTGGAGCAGCAGCCGAAGGTGAAAAGGAAGGAGGAGGCGGTGCGA
ACTGGCGCCCACGTGACTGAAATTGACTACTGTCGCATGCTCAACCGGGT
GCTGCCCCCGGACATTCGCGCGCTCGCGTGGGCGCCCGTAACGGAGGGGT
TCAGTGCCCGGTTCAGCTGTTCCGACAGGACGTTATCACGGTGTCAGTGC
GGTCCAACTTTCCGAAAGATCTGGACACGGAAGTGCCGACTTCGCCGTTG
GGGTCGCTGTGGATACCGAATAATCGCAACACAACCGCCGGTGATAACGC
CAACTGTAGTGTAAACCCGGAGCCCGAAAATCTCCGGGAACAAGGAGGAG
CTATTGCATGTTGTCCCGCGAAGGCTGACAGCGTCGAGGACAATCCAGAA
ACGGTCCGCGGCGCGCGCGATTGTTCCGGGCGTGAACAAAACGGCGGATG
GGTCGTCGACCCCGAGGGTTCTCTAGATTGTGGAGGGGGGGACGACGGGG
GCAAGGGCGGGGATGGGCGGGGGCAAAAAGTTATAGAGGACGGCTGTAGC
AAAAGTGGCGCTTCGGTCGAGAGTTCGCCGACAAGCTTGGAGCAGCAGCC
GAAGGTGAAAAGGAAGGAGGAGGCGGTGCGAACTGGCGCCCACGTGACTG
AAATTGACTACTGTCGCATGCTCAACCGGGTGCTGCCCCCGGACATTCGC
GCGCTCGCGTGGGCGCCCGTAACGGAGGGGTTCAGTGCCCGGTTCAGCTG
TTCCGACAGGACCAGGTACTTTTTCTTGGCGAGGGATCTGGACATCAAGG
CCATGGATGCCGCGGCCTCACGCATCGTGGGGGAACACGACTTCAGAAAC
CTCTGCAAGATAGGCGAGTTGACCCCTTGCCCTTCTTGACAGGTACTTTT
TCTTGGCGAGGGATCTGGACATCAAGGCCATGGATGCCGCGGCCTCACGC
ATCGTGGGGGAACACGACTTCAGAAACCTCTGCAAGATAGGCGAGTTGAC
CCCTTGCCCTTCTTGA
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