mRNA_H-elongata_contig111409.935.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig111409.935.1 vs. uniprot
Match: D7FUP3_ECTSI (Proline--tRNA ligase, central part n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP3_ECTSI) HSP 1 Score: 212 bits (539), Expect = 1.210e-64 Identity = 95/110 (86.36%), Postives = 104/110 (94.55%), Query Frame = 1
Query: 1 PCKGCMVIRPWGMAIWDSFREDMDKRIKEHGVENAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRLSKGPDGTLIPDPEAKLEEPLVIRPTSETIIWTMFRKWIDSYR 330
P KGCMVIRPWGMAIWD+F++DMDKRIK + V+NAYFPLLIPQSFLTKEAEHV+GFAKECAVVTHHRL K DGTLIPDPEAKLEEPLV+RPTSET+IWTM+RKWIDSYR
Sbjct: 120 PTKGCMVIRPWGMAIWDAFKDDMDKRIKTYDVDNAYFPLLIPQSFLTKEAEHVDGFAKECAVVTHHRLCKSDDGTLIPDPEAKLEEPLVVRPTSETVIWTMYRKWIDSYR 229
BLAST of mRNA_H-elongata_contig111409.935.1 vs. uniprot
Match: A0A7S2GJS1_9STRA (Proline--tRNA ligase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GJS1_9STRA) HSP 1 Score: 187 bits (476), Expect = 3.630e-55 Identity = 83/111 (74.77%), Postives = 96/111 (86.49%), Query Frame = 1
Query: 1 PCKGCMVIRPWGMAIWDSFREDMDKRIKEHGVENAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRLSKGPDGT-LIPDPEAKLEEPLVIRPTSETIIWTMFRKWIDSYR 330
P +GCMVIRPWGMA+WD R+D+DKRIK G +NAYFPL+IP SFL+KEA+HV+GFAKECAV+THHRL PDG LIPDP AKLEEPLV+RPTSET+IW MF KWIDS+R
Sbjct: 40 PVRGCMVIRPWGMALWDLMRDDLDKRIKATGAQNAYFPLMIPTSFLSKEADHVDGFAKECAVITHHRLCANPDGAGLIPDPSAKLEEPLVVRPTSETVIWNMFNKWIDSHR 150
BLAST of mRNA_H-elongata_contig111409.935.1 vs. uniprot
Match: A0A7S1TD86_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD86_9RHOD) HSP 1 Score: 178 bits (452), Expect = 1.350e-54 Identity = 81/110 (73.64%), Postives = 93/110 (84.55%), Query Frame = 1
Query: 1 PCKGCMVIRPWGMAIWDSFREDMDKRIKEHGVENAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRLSKGPDGTLIPDPEAKLEEPLVIRPTSETIIWTMFRKWIDSYR 330
P +GCMVIRP G AIWD+ R ++D+RI+E GV NAYFPL IPQSFL+KEAEHVEGFAKECAVVTHHRL G+L PDP+AKLEEPL++RPTSET+IW MF KWI SYR
Sbjct: 69 PVRGCMVIRPHGYAIWDAMRVELDRRIRETGVSNAYFPLFIPQSFLSKEAEHVEGFAKECAVVTHHRLRSDGSGSLEPDPDAKLEEPLIVRPTSETMIWYMFGKWIQSYR 178
BLAST of mRNA_H-elongata_contig111409.935.1 vs. uniprot
Match: A0A835Z2K2_9STRA (Proline--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2K2_9STRA) HSP 1 Score: 187 bits (475), Expect = 3.980e-54 Identity = 86/111 (77.48%), Postives = 96/111 (86.49%), Query Frame = 1
Query: 1 PCKGCMVIRPWGMAIWDSFREDMDKRIKEHGVENAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRLSKGPDGT-LIPDPEAKLEEPLVIRPTSETIIWTMFRKWIDSYR 330
P KGCMVIRPWGMA+WD+ R D+D RIK+ GV NAYFPL IP+SFL+KEAEHVEGFAKECAVVTHHRL P+G L+PDPEAKLEEPLV+RPTSETIIW MF KWI S+R
Sbjct: 172 PVKGCMVIRPWGMAVWDALRNDLDARIKDKGVSNAYFPLFIPRSFLSKEAEHVEGFAKECAVVTHHRLCADPNGGGLVPDPEAKLEEPLVVRPTSETIIWHMFGKWISSHR 282
BLAST of mRNA_H-elongata_contig111409.935.1 vs. uniprot
Match: L1JIE1_GUITC (Proline--tRNA ligase (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JIE1_GUITC) HSP 1 Score: 184 bits (468), Expect = 4.270e-54 Identity = 83/111 (74.77%), Postives = 95/111 (85.59%), Query Frame = 1
Query: 1 PCKGCMVIRPWGMAIWDSFREDMDKRIKEHGVENAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRLSKGPDGT-LIPDPEAKLEEPLVIRPTSETIIWTMFRKWIDSYR 330
P KGCMVIRPWGMA+WD ++++++RIKE G +NAYFPL IP SFL+KEAEHVEGFAKECAVVTHHRL P G L+ DPEAKLEEPL++RPTSETIIW MFRKWI SYR
Sbjct: 32 PVKGCMVIRPWGMAVWDELKDELNRRIKETGTQNAYFPLFIPMSFLSKEAEHVEGFAKECAVVTHHRLCADPSGKGLMADPEAKLEEPLIVRPTSETIIWDMFRKWISSYR 142
BLAST of mRNA_H-elongata_contig111409.935.1 vs. uniprot
Match: A0A7S3XX04_HETAK (Proline--tRNA ligase n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XX04_HETAK) HSP 1 Score: 187 bits (476), Expect = 4.590e-54 Identity = 86/111 (77.48%), Postives = 97/111 (87.39%), Query Frame = 1
Query: 1 PCKGCMVIRPWGMAIWDSFREDMDKRIKEHGVENAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRLSKGPDGT-LIPDPEAKLEEPLVIRPTSETIIWTMFRKWIDSYR 330
P +GCMVI+PWGMAIWD+ RED+D+ IK V+NAYFPL IP+SFL+KEAEHVEGFAKECAVVTHHRL P+G LIPDP+AKLEEPLV+RPTSETIIW MF KWIDSYR
Sbjct: 187 PVRGCMVIKPWGMAIWDALREDLDREIKAKEVQNAYFPLFIPRSFLSKEAEHVEGFAKECAVVTHHRLCADPEGGGLIPDPQAKLEEPLVVRPTSETIIWNMFGKWIDSYR 297
BLAST of mRNA_H-elongata_contig111409.935.1 vs. uniprot
Match: B8BV30_THAPS (Proline--tRNA ligase (Fragment) n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8BV30_THAPS) HSP 1 Score: 184 bits (467), Expect = 9.510e-54 Identity = 83/112 (74.11%), Postives = 98/112 (87.50%), Query Frame = 1
Query: 1 PCKGCMVIRPWGMAIWDSFREDMDKRIKEHGVENAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRLSKGP--DGTLIPDPEAKLEEPLVIRPTSETIIWTMFRKWIDSYR 330
P +GCMVI+PWGM+IWD R D+D RIKEHG ENAYFPLLIP+SFL+KEAEHV+GFAKECAVVTHHRL+ P +G LI DPEA+LE+PL+IRPTSET+IW MF+KWI S+R
Sbjct: 40 PVRGCMVIKPWGMSIWDQIRNDLDARIKEHGAENAYFPLLIPKSFLSKEAEHVDGFAKECAVVTHHRLTVDPSGEGGLIADPEAELEDPLIIRPTSETMIWNMFKKWIVSHR 151
BLAST of mRNA_H-elongata_contig111409.935.1 vs. uniprot
Match: A0A7S2SII9_9STRA (Proline--tRNA ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SII9_9STRA) HSP 1 Score: 184 bits (466), Expect = 4.130e-53 Identity = 81/111 (72.97%), Postives = 95/111 (85.59%), Query Frame = 1
Query: 1 PCKGCMVIRPWGMAIWDSFREDMDKRIKEHGVENAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRLSKGPDGT-LIPDPEAKLEEPLVIRPTSETIIWTMFRKWIDSYR 330
P +GCMVI+PWGMAIWD+ R D+D+RI + G NAYFPL IPQSFL+KEAEHVEGFAKECAVVTHHRL PDG LIPDP+A+LEEPL++RPTSET+IW M KWI+S+R
Sbjct: 115 PVRGCMVIKPWGMAIWDNLRNDLDRRISDSGASNAYFPLFIPQSFLSKEAEHVEGFAKECAVVTHHRLCASPDGNGLIPDPDAELEEPLIVRPTSETVIWNMLSKWINSHR 225
BLAST of mRNA_H-elongata_contig111409.935.1 vs. uniprot
Match: A0A7S4KUY6_GUITH (Proline--tRNA ligase (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KUY6_GUITH) HSP 1 Score: 184 bits (468), Expect = 5.810e-53 Identity = 83/111 (74.77%), Postives = 95/111 (85.59%), Query Frame = 1
Query: 1 PCKGCMVIRPWGMAIWDSFREDMDKRIKEHGVENAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRLSKGPDGT-LIPDPEAKLEEPLVIRPTSETIIWTMFRKWIDSYR 330
P KGCMVIRPWGMA+WD ++++++RIKE G +NAYFPL IP SFL+KEAEHVEGFAKECAVVTHHRL P G L+ DPEAKLEEPL++RPTSETIIW MFRKWI SYR
Sbjct: 210 PVKGCMVIRPWGMAVWDELKDELNRRIKETGTQNAYFPLFIPMSFLSKEAEHVEGFAKECAVVTHHRLCADPSGKGLMADPEAKLEEPLIVRPTSETIIWDMFRKWISSYR 320
BLAST of mRNA_H-elongata_contig111409.935.1 vs. uniprot
Match: A0A7S4AUK4_9STRA (Proline--tRNA ligase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AUK4_9STRA) HSP 1 Score: 183 bits (465), Expect = 1.760e-52 Identity = 83/112 (74.11%), Postives = 98/112 (87.50%), Query Frame = 1
Query: 1 PCKGCMVIRPWGMAIWDSFREDMDKRIKEHGVENAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRL--SKGPDGTLIPDPEAKLEEPLVIRPTSETIIWTMFRKWIDSYR 330
P +GCMVI+PWGMA+WD R ++D RIKEHG ENAYFPLLIP+SFL+KEAEHV+GFAKECAVVTHHRL S DG L+ DPEA+LE+PL+IRPTSET+IW MFRKWI+S+R
Sbjct: 184 PVRGCMVIKPWGMALWDKVRTELDSRIKEHGAENAYFPLLIPKSFLSKEAEHVDGFAKECAVVTHHRLKSSDEEDGGLVVDPEAELEDPLIIRPTSETMIWYMFRKWINSHR 295 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111409.935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig111409.935.1 >prot_H-elongata_contig111409.935.1 ID=prot_H-elongata_contig111409.935.1|Name=mRNA_H-elongata_contig111409.935.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp MVIRPWGMAIWDSFREDMDKRIKEHGVENAYFPLLIPQSFLTKEAEHVEGback to top mRNA from alignment at H-elongata_contig111409:25..1554+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig111409.935.1 ID=mRNA_H-elongata_contig111409.935.1|Name=mRNA_H-elongata_contig111409.935.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1530bp|location=Sequence derived from alignment at H-elongata_contig111409:25..1554+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig111409:25..1554+ >mRNA_H-elongata_contig111409.935.1 ID=mRNA_H-elongata_contig111409.935.1|Name=mRNA_H-elongata_contig111409.935.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig111409:25..1554+ (Himanthalia elongata Himel1 dioecious)back to top |