mRNA_H-elongata_contig111409.935.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111409.935.1
Unique NamemRNA_H-elongata_contig111409.935.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig111409.935.1 vs. uniprot
Match: D7FUP3_ECTSI (Proline--tRNA ligase, central part n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP3_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 1.210e-64
Identity = 95/110 (86.36%), Postives = 104/110 (94.55%), Query Frame = 1
Query:    1 PCKGCMVIRPWGMAIWDSFREDMDKRIKEHGVENAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRLSKGPDGTLIPDPEAKLEEPLVIRPTSETIIWTMFRKWIDSYR 330
            P KGCMVIRPWGMAIWD+F++DMDKRIK + V+NAYFPLLIPQSFLTKEAEHV+GFAKECAVVTHHRL K  DGTLIPDPEAKLEEPLV+RPTSET+IWTM+RKWIDSYR
Sbjct:  120 PTKGCMVIRPWGMAIWDAFKDDMDKRIKTYDVDNAYFPLLIPQSFLTKEAEHVDGFAKECAVVTHHRLCKSDDGTLIPDPEAKLEEPLVVRPTSETVIWTMYRKWIDSYR 229          
BLAST of mRNA_H-elongata_contig111409.935.1 vs. uniprot
Match: A0A7S2GJS1_9STRA (Proline--tRNA ligase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GJS1_9STRA)

HSP 1 Score: 187 bits (476), Expect = 3.630e-55
Identity = 83/111 (74.77%), Postives = 96/111 (86.49%), Query Frame = 1
Query:    1 PCKGCMVIRPWGMAIWDSFREDMDKRIKEHGVENAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRLSKGPDGT-LIPDPEAKLEEPLVIRPTSETIIWTMFRKWIDSYR 330
            P +GCMVIRPWGMA+WD  R+D+DKRIK  G +NAYFPL+IP SFL+KEA+HV+GFAKECAV+THHRL   PDG  LIPDP AKLEEPLV+RPTSET+IW MF KWIDS+R
Sbjct:   40 PVRGCMVIRPWGMALWDLMRDDLDKRIKATGAQNAYFPLMIPTSFLSKEADHVDGFAKECAVITHHRLCANPDGAGLIPDPSAKLEEPLVVRPTSETVIWNMFNKWIDSHR 150          
BLAST of mRNA_H-elongata_contig111409.935.1 vs. uniprot
Match: A0A7S1TD86_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD86_9RHOD)

HSP 1 Score: 178 bits (452), Expect = 1.350e-54
Identity = 81/110 (73.64%), Postives = 93/110 (84.55%), Query Frame = 1
Query:    1 PCKGCMVIRPWGMAIWDSFREDMDKRIKEHGVENAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRLSKGPDGTLIPDPEAKLEEPLVIRPTSETIIWTMFRKWIDSYR 330
            P +GCMVIRP G AIWD+ R ++D+RI+E GV NAYFPL IPQSFL+KEAEHVEGFAKECAVVTHHRL     G+L PDP+AKLEEPL++RPTSET+IW MF KWI SYR
Sbjct:   69 PVRGCMVIRPHGYAIWDAMRVELDRRIRETGVSNAYFPLFIPQSFLSKEAEHVEGFAKECAVVTHHRLRSDGSGSLEPDPDAKLEEPLIVRPTSETMIWYMFGKWIQSYR 178          
BLAST of mRNA_H-elongata_contig111409.935.1 vs. uniprot
Match: A0A835Z2K2_9STRA (Proline--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2K2_9STRA)

HSP 1 Score: 187 bits (475), Expect = 3.980e-54
Identity = 86/111 (77.48%), Postives = 96/111 (86.49%), Query Frame = 1
Query:    1 PCKGCMVIRPWGMAIWDSFREDMDKRIKEHGVENAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRLSKGPDGT-LIPDPEAKLEEPLVIRPTSETIIWTMFRKWIDSYR 330
            P KGCMVIRPWGMA+WD+ R D+D RIK+ GV NAYFPL IP+SFL+KEAEHVEGFAKECAVVTHHRL   P+G  L+PDPEAKLEEPLV+RPTSETIIW MF KWI S+R
Sbjct:  172 PVKGCMVIRPWGMAVWDALRNDLDARIKDKGVSNAYFPLFIPRSFLSKEAEHVEGFAKECAVVTHHRLCADPNGGGLVPDPEAKLEEPLVVRPTSETIIWHMFGKWISSHR 282          
BLAST of mRNA_H-elongata_contig111409.935.1 vs. uniprot
Match: L1JIE1_GUITC (Proline--tRNA ligase (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JIE1_GUITC)

HSP 1 Score: 184 bits (468), Expect = 4.270e-54
Identity = 83/111 (74.77%), Postives = 95/111 (85.59%), Query Frame = 1
Query:    1 PCKGCMVIRPWGMAIWDSFREDMDKRIKEHGVENAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRLSKGPDGT-LIPDPEAKLEEPLVIRPTSETIIWTMFRKWIDSYR 330
            P KGCMVIRPWGMA+WD  ++++++RIKE G +NAYFPL IP SFL+KEAEHVEGFAKECAVVTHHRL   P G  L+ DPEAKLEEPL++RPTSETIIW MFRKWI SYR
Sbjct:   32 PVKGCMVIRPWGMAVWDELKDELNRRIKETGTQNAYFPLFIPMSFLSKEAEHVEGFAKECAVVTHHRLCADPSGKGLMADPEAKLEEPLIVRPTSETIIWDMFRKWISSYR 142          
BLAST of mRNA_H-elongata_contig111409.935.1 vs. uniprot
Match: A0A7S3XX04_HETAK (Proline--tRNA ligase n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XX04_HETAK)

HSP 1 Score: 187 bits (476), Expect = 4.590e-54
Identity = 86/111 (77.48%), Postives = 97/111 (87.39%), Query Frame = 1
Query:    1 PCKGCMVIRPWGMAIWDSFREDMDKRIKEHGVENAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRLSKGPDGT-LIPDPEAKLEEPLVIRPTSETIIWTMFRKWIDSYR 330
            P +GCMVI+PWGMAIWD+ RED+D+ IK   V+NAYFPL IP+SFL+KEAEHVEGFAKECAVVTHHRL   P+G  LIPDP+AKLEEPLV+RPTSETIIW MF KWIDSYR
Sbjct:  187 PVRGCMVIKPWGMAIWDALREDLDREIKAKEVQNAYFPLFIPRSFLSKEAEHVEGFAKECAVVTHHRLCADPEGGGLIPDPQAKLEEPLVVRPTSETIIWNMFGKWIDSYR 297          
BLAST of mRNA_H-elongata_contig111409.935.1 vs. uniprot
Match: B8BV30_THAPS (Proline--tRNA ligase (Fragment) n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8BV30_THAPS)

HSP 1 Score: 184 bits (467), Expect = 9.510e-54
Identity = 83/112 (74.11%), Postives = 98/112 (87.50%), Query Frame = 1
Query:    1 PCKGCMVIRPWGMAIWDSFREDMDKRIKEHGVENAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRLSKGP--DGTLIPDPEAKLEEPLVIRPTSETIIWTMFRKWIDSYR 330
            P +GCMVI+PWGM+IWD  R D+D RIKEHG ENAYFPLLIP+SFL+KEAEHV+GFAKECAVVTHHRL+  P  +G LI DPEA+LE+PL+IRPTSET+IW MF+KWI S+R
Sbjct:   40 PVRGCMVIKPWGMSIWDQIRNDLDARIKEHGAENAYFPLLIPKSFLSKEAEHVDGFAKECAVVTHHRLTVDPSGEGGLIADPEAELEDPLIIRPTSETMIWNMFKKWIVSHR 151          
BLAST of mRNA_H-elongata_contig111409.935.1 vs. uniprot
Match: A0A7S2SII9_9STRA (Proline--tRNA ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SII9_9STRA)

HSP 1 Score: 184 bits (466), Expect = 4.130e-53
Identity = 81/111 (72.97%), Postives = 95/111 (85.59%), Query Frame = 1
Query:    1 PCKGCMVIRPWGMAIWDSFREDMDKRIKEHGVENAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRLSKGPDGT-LIPDPEAKLEEPLVIRPTSETIIWTMFRKWIDSYR 330
            P +GCMVI+PWGMAIWD+ R D+D+RI + G  NAYFPL IPQSFL+KEAEHVEGFAKECAVVTHHRL   PDG  LIPDP+A+LEEPL++RPTSET+IW M  KWI+S+R
Sbjct:  115 PVRGCMVIKPWGMAIWDNLRNDLDRRISDSGASNAYFPLFIPQSFLSKEAEHVEGFAKECAVVTHHRLCASPDGNGLIPDPDAELEEPLIVRPTSETVIWNMLSKWINSHR 225          
BLAST of mRNA_H-elongata_contig111409.935.1 vs. uniprot
Match: A0A7S4KUY6_GUITH (Proline--tRNA ligase (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KUY6_GUITH)

HSP 1 Score: 184 bits (468), Expect = 5.810e-53
Identity = 83/111 (74.77%), Postives = 95/111 (85.59%), Query Frame = 1
Query:    1 PCKGCMVIRPWGMAIWDSFREDMDKRIKEHGVENAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRLSKGPDGT-LIPDPEAKLEEPLVIRPTSETIIWTMFRKWIDSYR 330
            P KGCMVIRPWGMA+WD  ++++++RIKE G +NAYFPL IP SFL+KEAEHVEGFAKECAVVTHHRL   P G  L+ DPEAKLEEPL++RPTSETIIW MFRKWI SYR
Sbjct:  210 PVKGCMVIRPWGMAVWDELKDELNRRIKETGTQNAYFPLFIPMSFLSKEAEHVEGFAKECAVVTHHRLCADPSGKGLMADPEAKLEEPLIVRPTSETIIWDMFRKWISSYR 320          
BLAST of mRNA_H-elongata_contig111409.935.1 vs. uniprot
Match: A0A7S4AUK4_9STRA (Proline--tRNA ligase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AUK4_9STRA)

HSP 1 Score: 183 bits (465), Expect = 1.760e-52
Identity = 83/112 (74.11%), Postives = 98/112 (87.50%), Query Frame = 1
Query:    1 PCKGCMVIRPWGMAIWDSFREDMDKRIKEHGVENAYFPLLIPQSFLTKEAEHVEGFAKECAVVTHHRL--SKGPDGTLIPDPEAKLEEPLVIRPTSETIIWTMFRKWIDSYR 330
            P +GCMVI+PWGMA+WD  R ++D RIKEHG ENAYFPLLIP+SFL+KEAEHV+GFAKECAVVTHHRL  S   DG L+ DPEA+LE+PL+IRPTSET+IW MFRKWI+S+R
Sbjct:  184 PVRGCMVIKPWGMALWDKVRTELDSRIKEHGAENAYFPLLIPKSFLSKEAEHVDGFAKECAVVTHHRLKSSDEEDGGLVVDPEAELEDPLIIRPTSETMIWYMFRKWINSHR 295          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111409.935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUP3_ECTSI1.210e-6486.36Proline--tRNA ligase, central part n=1 Tax=Ectocar... [more]
A0A7S2GJS1_9STRA3.630e-5574.77Proline--tRNA ligase n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1TD86_9RHOD1.350e-5473.64Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
A0A835Z2K2_9STRA3.980e-5477.48Proline--tRNA ligase n=1 Tax=Tribonema minus TaxID... [more]
L1JIE1_GUITC4.270e-5474.77Proline--tRNA ligase (Fragment) n=1 Tax=Guillardia... [more]
A0A7S3XX04_HETAK4.590e-5477.48Proline--tRNA ligase n=2 Tax=Heterosigma akashiwo ... [more]
B8BV30_THAPS9.510e-5474.11Proline--tRNA ligase (Fragment) n=2 Tax=Thalassios... [more]
A0A7S2SII9_9STRA4.130e-5372.97Proline--tRNA ligase n=1 Tax=Rhizochromulina marin... [more]
A0A7S4KUY6_GUITH5.810e-5374.77Proline--tRNA ligase (Fragment) n=1 Tax=Guillardia... [more]
A0A7S4AUK4_9STRA1.760e-5274.11Proline--tRNA ligase n=1 Tax=Pseudo-nitzschia aust... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111409contigH-elongata_contig111409:25..1554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score203.8
Seed ortholog evalue4.1e-50
Seed eggNOG ortholog2880.D7FUP3
KEGG rclassRC00055,RC00523
KEGG koko:K01881
KEGG ReactionR03661
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
EggNOG free text desc.synthetase
EggNOG OGsCOG0442@1,KOG4163@2759
EC6.1.1.15
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProline--tRNA ligase, central part
Ec32 orthologEc-26_002190.1
Exons3
Model size330
Cds size315
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111409.935.1prot_H-elongata_contig111409.935.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111409 40..1554 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929638.0173914-UTR-H-elongata_contig111409:24..391622929638.0173914-UTR-H-elongata_contig111409:24..39Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig111409 25..39 +
1691679100.9992063-UTR-H-elongata_contig111409:24..391691679100.9992063-UTR-H-elongata_contig111409:24..39Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig111409 25..39 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929638.0374248-CDS-H-elongata_contig111409:39..991622929638.0374248-CDS-H-elongata_contig111409:39..99Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111409 40..99 +
1691679101.0141153-CDS-H-elongata_contig111409:39..991691679101.0141153-CDS-H-elongata_contig111409:39..99Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111409 40..99 +
1622929638.051635-CDS-H-elongata_contig111409:553..7211622929638.051635-CDS-H-elongata_contig111409:553..721Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111409 554..721 +
1691679101.0301535-CDS-H-elongata_contig111409:553..7211691679101.0301535-CDS-H-elongata_contig111409:553..721Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111409 554..721 +
1622929638.0667276-CDS-H-elongata_contig111409:1467..15541622929638.0667276-CDS-H-elongata_contig111409:1467..1554Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111409 1468..1554 +
1691679101.0421805-CDS-H-elongata_contig111409:1467..15541691679101.0421805-CDS-H-elongata_contig111409:1467..1554Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111409 1468..1554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111409.935.1

>prot_H-elongata_contig111409.935.1 ID=prot_H-elongata_contig111409.935.1|Name=mRNA_H-elongata_contig111409.935.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MVIRPWGMAIWDSFREDMDKRIKEHGVENAYFPLLIPQSFLTKEAEHVEG
FAKECAVVTHHRLSKGPDGTLIPDPEAKLEEPLVIRPTSETIIWTMFRKW
IDSYR
back to top

mRNA from alignment at H-elongata_contig111409:25..1554+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111409.935.1 ID=mRNA_H-elongata_contig111409.935.1|Name=mRNA_H-elongata_contig111409.935.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1530bp|location=Sequence derived from alignment at H-elongata_contig111409:25..1554+ (Himanthalia elongata Himel1 dioecious)
CCTTGCAAGGGCTGCATGGTCATCCGGCCGTGGGGCATGGCCATCTGGGA CTCCTTCAGGGAAGACATGGACAAGGTACGTGTCGCGGAGTTTGGCGGGT AAGTCAGTCAATCGGTAGTCCGGCTCAACACACCTCGGACATCCTATCCT TATTTTTAGTGACTTTGGCCAAAAAAACGATCACAGATGAGCGCCAAGAC TTCCTTGCGCTCTACCAACTCCGTATCAGCGCTTCCACTGCGAGCTCAGG TGTACGACGGGACTGACTTCAAGCCCTTATTCCCCCCTGGGCCCTGGGCA GCAGGATCGGGCTGGTACATGAAAGGGCTAGAGAAGCGGCTTCAGCTTTC TATCTTCACTTGAGGCTAAGATTTATGTTCCGGTTTTCGCCTACGAAACA CTTCCTTTGGCGTGGTAGTACTCGTCCAAAGTTCAGGCCACCTTCCGGTC TTCCTCTTCGCCGATCACTCGTAGCCCTTTCCCTTTCTTCTTCTTCACCC TCCGGCGCGGCTTTCCGCGATCGTGCCAGCGCATCAAGGAGCATGGCGTC GAGAACGCGTACTTCCCCCTGCTGATACCGCAGAGTTTTCTAACGAAGGA GGCCGAGCACGTGGAGGGGTTTGCGAAGGAATGCGCCGTGGTGACTCATC ACCGGTTGTCCAAGGGCCCCGACGGCACTCTCATTCCGGATCCGGAGGTA ACCCAGCCTCTTCTCAGCTTTCTGTTTGTCGAAATTTAGTTATTCCCTGG CCAGCGTGGTGAGGGAGAGGAAGAGCCTCGACATTCTTTCTAACACTGCA GTTGTCGCTGCGGTAAATGATACATAGAAACACGGTGAGATCGCGATCAT TTGCCCGCGATGTATCCGTTAGCGGCCACGAGCGCGTCTCGGAGCTATCA ACGCCCTCAGCCACCCGCTCGCTGTATGGGAAATGACGGGGACGTTTCGG ACAGGGGAACGCCCGCGCGTTGCCCGCTCACCATACCGATGCCAACGACG CTCAAAACTATTTTGTTTCGTGCCGTGTGTGATCTAGCCGCCAACGCTTG TACTAAAACACTCGAGAATTGCTACCGTACGCTTTGAAATCATCCAAATA GAAGGGTGGGAGGAGGGACAAATACTTAGCGTCCCCGCTTCGGGACAAGG CGTAAGCACCCCATTCTCTATGGTAGTTATGTATCCCAACTGAAGTTTAC AACCGGGGATACGATAATTAATGTTATATTCCCCTCCTCAAACCGGGGGC GCTTAACCCCCCCCCCCCGACACCGCTATTGTTGGATTGCTCTATGCTGT ACGCCATATACTTTATTGTGTAGTCATGTCTACTGTGAAATACAGCGGGC GTCGGAGAGGAACGGCGCGCGCGCGCGCTCGCGCTCGAATGTACTCAGCG CGCACCTTGTGTGTGGCACGCTGGATCGAATTCGACCGTGCAGGCAAAAC TGGAAGAGCCGCTGGTCATCCGCCCGACGAGTGAGACGATAATCTGGACC ATGTTCCGGAAGTGGATCGACAGTTATAGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig111409:25..1554+

>mRNA_H-elongata_contig111409.935.1 ID=mRNA_H-elongata_contig111409.935.1|Name=mRNA_H-elongata_contig111409.935.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig111409:25..1554+ (Himanthalia elongata Himel1 dioecious)
ATGGTCATCCGGCCGTGGGGCATGGCCATCTGGGACTCCTTCAGGGAAGA
CATGGACAAGATGGTCATCCGGCCGTGGGGCATGGCCATCTGGGACTCCT
TCAGGGAAGACATGGACAAGCGCATCAAGGAGCATGGCGTCGAGAACGCG
TACTTCCCCCTGCTGATACCGCAGAGTTTTCTAACGAAGGAGGCCGAGCA
CGTGGAGGGGTTTGCGAAGGAATGCGCCGTGGTGACTCATCACCGGTTGT
CCAAGGGCCCCGACGGCACTCTCATTCCGGATCCGGAGCGCATCAAGGAG
CATGGCGTCGAGAACGCGTACTTCCCCCTGCTGATACCGCAGAGTTTTCT
AACGAAGGAGGCCGAGCACGTGGAGGGGTTTGCGAAGGAATGCGCCGTGG
TGACTCATCACCGGTTGTCCAAGGGCCCCGACGGCACTCTCATTCCGGAT
CCGGAGGCAAAACTGGAAGAGCCGCTGGTCATCCGCCCGACGAGTGAGAC
GATAATCTGGACCATGTTCCGGAAGTGGATCGACAGTTATAGGGCAAAAC
TGGAAGAGCCGCTGGTCATCCGCCCGACGAGTGAGACGATAATCTGGACC
ATGTTCCGGAAGTGGATCGACAGTTATAGG
back to top