mRNA_H-elongata_contig11128.927.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11128.927.1 vs. uniprot
Match: D7G767_ECTSI (Selenoprotein T n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G767_ECTSI) HSP 1 Score: 237 bits (605), Expect = 2.030e-71 Identity = 139/279 (49.82%), Postives = 179/279 (64.16%), Query Frame = 1
Query: 1 VIIRRYVGDGSVRKAPAPVPASPAGGVAPDSGEVKLPVAPLEKDAPSAKKEVPTVLPDLPEEVDEFAGLGGIT------GVIQLDTDAVHTAAE--VFTDSRLAYASSLTAGF----------GAVPRVLVQYCST*GMRRNFEELRSFLHLHFPVLAEADSIRGELYPPPAFAQNLATLGSFLQMGGIAITLGGSIIFDTLGVPQPFFVPPMRRNSIPTMIGLFFLNSFCSQFVQTGAFEVWIDDELVFSRLEEKGKFPSGAVLISALEKRRLRSTKN 783
+ I+RYVGDG+ K+PA PAG SG ++PVAPL + P+ K + P + + DEFAG+GG T + + D +AA+ DS + + + + G G VP+VLVQ+C + GMRRNFEELRSFLH H+P LA+A SIRGELYPPP AQ LATLGS+ Q+GG+A L GS+IFD LGVP PFFVP MRRN + T++GL NSFC + TGAFEV ID ELVFSRL +G+FP+GA+L+ EKR LRS ++
Sbjct: 33 LFIKRYVGDGAAGKSPATSDKPPAGAA---SGAREVPVAPLAEIVPT--KHMNHARPAIDDPEDEFAGMGGSTKNTGGGSLGSSNRDDARSAAQQLAVADSSVEFGGTASLGAVTGAGAVGSGGDVPQVLVQFCVSXGMRRNFEELRSFLHAHYPALAKAQSIRGELYPPPPMAQALATLGSYAQVGGVASVLFGSLIFDRLGVPAPFFVPVMRRNPMATIVGLTVANSFCGSLLATGAFEVSIDGELVFSRLAGEGQFPTGALLLREFEKRGLRSVRS 306
BLAST of mRNA_H-elongata_contig11128.927.1 vs. uniprot
Match: A0A7S2D3C0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D3C0_9STRA) HSP 1 Score: 110 bits (275), Expect = 3.460e-25 Identity = 57/134 (42.54%), Postives = 84/134 (62.69%), Query Frame = 1
Query: 361 MRRNFEELRSFLHLHFPVLAEADSIRGELYPPPAFAQNLATLGSFLQMGGIAITLGGSIIFDTLGVPQPFFVPPMRRNSIPTMIGLFFLNSFCSQFVQTGAFEVWIDDELVFSRLEEKGKFPSGAVLISALEKR 762
M+RNF ELR+FL +P L I GE YPPP +A + +QMGGI + + GS IF+TLG+P+P + ++ N + G+FF+NS + TGAFEV +D E+V+S+LE G+ P+G LI +E++
Sbjct: 1 MKRNFVELRNFLAHRYPELQ--GKIAGENYPPPPYANLAVSAAGTVQMGGIVLMMFGSQIFNTLGMPEPEWYKELQENKMMAFCGVFFMNSMANSLTTTGAFEVLLDGEVVYSKLET-GRMPNGRQLIELMEQK 131
BLAST of mRNA_H-elongata_contig11128.927.1 vs. uniprot
Match: A0A7S2V5G7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5G7_9STRA) HSP 1 Score: 110 bits (275), Expect = 9.450e-24 Identity = 58/151 (38.41%), Postives = 91/151 (60.26%), Query Frame = 1
Query: 325 PRVLVQYCST*GMRRNFEELRSFLHLHFPVLAEADSIRGELYPPPAFAQNLATLGSFLQMGGIAITLGGSIIFDTLGVPQPFFVPPMRRNSIPTMIGLFFLNSFCSQFVQTGAFEVWIDDELVFSRLEEKGKFPSGAVLISALEKRRLRST 777
P+V+V+YC M++NFEE++ FL +P L SI G+ YP P + ++ +GS L + + +GGS +F +G+P+P ++ + N + IG+F +N S +TGAFEV++DD+L+FS+LE KFPS L L + LR T
Sbjct: 131 PQVIVKYCPQSNMKKNFEEMQQFLEYRYPQLV--GSIHGQNYPLPFHIKVISKIGSSLHLLSLVFLMGGSFVFQKMGIPEPSWLDWAKNNRMQVFIGIFGINYVTSNMAKTGAFEVFLDDDLIFSKLE-MNKFPSVQDLQVGLAQFGLRPT 278
BLAST of mRNA_H-elongata_contig11128.927.1 vs. uniprot
Match: A0A6S9L5H0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9L5H0_HETAK) HSP 1 Score: 99.8 bits (247), Expect = 2.890e-21 Identity = 54/134 (40.30%), Postives = 82/134 (61.19%), Query Frame = 1
Query: 361 MRRNFEELRSFLHLHFPVLAEADSIRGELYPPPAFAQNLATLGSFLQMGGIAITLGGSIIFDTLGVPQP-FFVPPMRRNSIPTMIGLFFLNSFCSQFVQTGAFEVWIDDELVFSRLEEKGKFPSGAVLISALEK 759
M+RNF EL+ FL +P L +++G YPPP FA LA LG+ GGIA+T G +F +G+ P + M+ N +P + GLF LN+ F +TGAFEV+++ E VFS+LE G+FP+ + + +++
Sbjct: 1 MQRNFIELQKFLEYSYPELV--GNVQGTFYPPPPFALALANLGTLALWGGIALTFLGETLFRAVGLAAPPGWFQSMKANPMPVVGGLFALNAVAGGFAKTGAFEVYLNGETVFSKLES-GRFPNAEDIYAGMKR 131
BLAST of mRNA_H-elongata_contig11128.927.1 vs. uniprot
Match: F0YLT9_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLT9_AURAN) HSP 1 Score: 87.8 bits (216), Expect = 1.250e-16 Identity = 49/143 (34.27%), Postives = 77/143 (53.85%), Query Frame = 1
Query: 331 VLVQYCST*GMRRNFEELRSFLHLHFPVLAEADSIRGELYPPPAFAQNLATLGSFLQMGGIAITLGGSIIFDTLGVPQPFFVPPMRRNSIPTMIGLFFLNSFCSQFVQTGAFEVWIDDELVFSRLEEKGKFPSGAVLISALEK 759
VLV+ C++ G +RN+ ELR FL +P L S+ E YPPPA A Q+ +A+ LGG +F G P + + N + ++ N+ +Q V TGAFE+ ++ EL FS+LE G+ PS A ++ +++
Sbjct: 24 VLVKLCTSXGTQRNYLELRKFLEDAYPGLR---SVAAEQYPPPAVGVFAAQAAGMAQVACVALLLGGEKVFQLFGAATPGWYHSVAENKMMAFGAVWMANNVAAQMVATGAFEIHVNGELAFSKLET-GRLPSAADVVRGMKR 162
BLAST of mRNA_H-elongata_contig11128.927.1 vs. uniprot
Match: A0A482RX40_9ARCH (SelT/SelW/SelH family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RX40_9ARCH) HSP 1 Score: 84.0 bits (206), Expect = 9.310e-16 Identity = 45/131 (34.35%), Postives = 76/131 (58.02%), Query Frame = 1
Query: 361 MRRNFEELRSFLHLHFPVLAEADSIRGELYPPPAFAQNLATLGSFLQMGGIAITLGGSIIFDTLGVPQPFFVPPMRRNSIPTMIGLFFLNSFCSQFVQTGAFEVWIDDELVFSRLEEKGKFPSGAVLISAL 753
M + F++++ F+ +P + + G LYPPP A+ AT+ ++ GI + +GG IF LG+P+P FV + RN + + LF LN+ + TGAFE+++D+ VFS+L G+ P+ ++ AL
Sbjct: 1 MSKYFQDVKRFVESKYPSV----HVSGGLYPPPIHARIFATIMGYVWTIGIVLIVGGQQIFKILGIPEPEFVSWIARNKGNSFLALFVLNTVSHSMLATGAFELYLDEAPVFSKLTY-GRVPTAEDILHAL 126
BLAST of mRNA_H-elongata_contig11128.927.1 vs. uniprot
Match: B7G6P7_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G6P7_PHATC) HSP 1 Score: 82.8 bits (203), Expect = 3.010e-15 Identity = 57/136 (41.91%), Postives = 78/136 (57.35%), Query Frame = 1
Query: 361 MRRNFEELRSFLHLHFPVLAEADSIRGELYPPPAFAQNLATLGSFLQMGGIA-ITLGGSIIFDTLGVPQ---PFFVPPMRRNSIPTMIGLFF-LNSFCSQFVQTGAFEVWIDDELVFSRLEEKGKFPSGAVLISAL 753
M+RNF ++ FL FP L I G YPPPA + A L S +Q+ GI I GG IF LG PQ P + +N++P I LF L + ++ QTGAFEV+++D+ +FS+L KG FP+ LIS+L
Sbjct: 1 MKRNFLNVQKFLEDQFPELR--GHITGANYPPPATIELAANLMSVIQLMGIFWIVAGGEKIFRFLGYPQNQLPSVYHTINQNAMPIGIFLFLILPQWIGRYTQTGAFEVYLNDKEIFSKLS-KGAFPTADDLISSL 133
BLAST of mRNA_H-elongata_contig11128.927.1 vs. uniprot
Match: A0A7D4XC27_SCEQU (Selenoprotein T n=1 Tax=Scenedesmus quadricauda TaxID=3089 RepID=A0A7D4XC27_SCEQU) HSP 1 Score: 78.2 bits (191), Expect = 5.200e-13 Identity = 47/144 (32.64%), Postives = 81/144 (56.25%), Query Frame = 1
Query: 328 RVLVQYCST*GMRRNFEELRSFLHLHFPVLAEADSIRGELYPPPAFAQNLATLGSFLQMGGIAITLGGSIIFDTLGVPQP-FFVPPMRRNSIPTMIGLFFL-NSFCSQFVQTGAFEVWIDDELVFSRLEEKGKFPSGAVLISAL 753
RV V +C++ + F +++ L E + G YPPPA+ LA + +QMG + + G +F+ GVP P +++ + N T +G++F+ N +Q + TGAFEV+ D ELV+S+L++ G+ P+ L+SA+
Sbjct: 49 RVHVAFCTSXSYKGAFMQVQQLLQQQLGPELE---VVGTQYPPPAWKAGLAQVLGMVQMGALGGVVLGEKVFEAAGVPVPQWYLDNVAANRFGTGVGVWFVGNMITNQLISTGAFEVYYDGELVWSKLQQ-GRMPTAPELLSAM 188
BLAST of mRNA_H-elongata_contig11128.927.1 vs. uniprot
Match: A0A6U3TNV0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3TNV0_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 5.810e-13 Identity = 47/137 (34.31%), Postives = 72/137 (52.55%), Query Frame = 1
Query: 361 MRRNFEELRSFLHLHFPVLAEADSIRGELYPPPAFAQNLATLGSFLQMGGIAITLGGSIIFDTL----GVPQPFFVPPMRRNSIPTMIGLFFLNSFCSQFVQTGAFEVWIDDELVFSRLEEKGKFPSGAVLISALEK 759
M+ NF LR L FP E I G+ YP P + AT+ S LQM I + L G +++ + P F+ ++ MI + S+ F TGAFE+++DD+L+FS+LE G+ P+ +++ALEK
Sbjct: 1 MKANFLRLRELLRTEFP--GEWSEISGDNYPAPEWTNLAATVISILQMLVILVVLTGDAVWNYIPGFRSGPPEFYYKMKDNPALTFMIVFLVIPSYVQSFANTGAFEIFLDDKLIFSKLET-GRMPNVGEIMAALEK 134
BLAST of mRNA_H-elongata_contig11128.927.1 vs. uniprot
Match: B9GIG5_POPTR (Uncharacterized protein n=4 Tax=Populus TaxID=3689 RepID=B9GIG5_POPTR) HSP 1 Score: 78.6 bits (192), Expect = 7.190e-13 Identity = 55/157 (35.03%), Postives = 80/157 (50.96%), Query Frame = 1
Query: 301 LTAGFGAVPRVLVQYCST*GMRRNFEELRSFLHLHFPVLAEADSIRGELYPPPAFAQNLATLGSFLQMGGIAITLGGSIIFDTLGVPQPFFVPPMRRNSIPTMIGLFFLNSFCSQFVQT-GAFEVWIDDELVFSRLEEKGKFPSGAVLISALEKRRL 768
+ G G V + +CS+ R N ++ L FP + D + YPP + +A L Q+G + I LGG IF LGV P + +R N T+ + L + F+Q+ GAFEV+ DDELVFS+L E G+FP G + + + RRL
Sbjct: 79 VVGGIGLGSTVKIDFCSSCSYRGNAVTMKRMLETQFPGI---DVVLAN-YPPSLPKRAVAKLVPVFQIGVVGIVLGGEQIFPMLGVRTPPWYYSLRANKFGTIASTWLLGNALQSFLQSSGAFEVYCDDELVFSKLRE-GRFP-GEIELKDIVGRRL 229 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11128.927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11128.927.1 >prot_H-elongata_contig11128.927.1 ID=prot_H-elongata_contig11128.927.1|Name=mRNA_H-elongata_contig11128.927.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp MRRNFEELRSFLHLHFPVLAEADSIRGELYPPPAFAQNLATLGSFLQMGGback to top mRNA from alignment at H-elongata_contig11128:6825..8746- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11128.927.1 ID=mRNA_H-elongata_contig11128.927.1|Name=mRNA_H-elongata_contig11128.927.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1922bp|location=Sequence derived from alignment at H-elongata_contig11128:6825..8746- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11128:6825..8746- >mRNA_H-elongata_contig11128.927.1 ID=mRNA_H-elongata_contig11128.927.1|Name=mRNA_H-elongata_contig11128.927.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at H-elongata_contig11128:6825..8746- (Himanthalia elongata Himel1 dioecious)back to top |