mRNA_H-elongata_contig111222.920.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111222.920.1
Unique NamemRNA_H-elongata_contig111222.920.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig111222.920.1 vs. uniprot
Match: D7FPL2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPL2_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.430e-19
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    1 RWRTDCQVEGCAFRHEEEQEAPECAMYQHGFCRHGPHCRFR 123
            RWRTDCQVEGCAFRHEEEQEAPECAMYQ GFCR GP CRFR
Sbjct:   66 RWRTDCQVEGCAFRHEEEQEAPECAMYQQGFCRQGPTCRFR 106
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111222.920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPL2_ECTSI1.430e-1992.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111222contigH-elongata_contig111222:2012..2137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue1.5e-16
Seed eggNOG ortholog2880.D7FPL2
KEGG koko:K14404
KEGG Pathwayko03015,ko05164,map03015,map05164
GOsGO:0002682,GO:0002684,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005847,GO:0005849,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009966,GO:0009987,GO:0010363,GO:0010467,GO:0010468,GO:0010646,GO:0010941,GO:0010942,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0019219,GO:0019222,GO:0023051,GO:0031123,GO:0031124,GO:0031323,GO:0031347,GO:0031349,GO:0031440,GO:0031974,GO:0031981,GO:0032991,GO:0034052,GO:0034641,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045088,GO:0045089,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050684,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140098,GO:1900363,GO:1901360,GO:1901363,GO:1903311,GO:2000031,GO:2001023,GO:2001038
EggNOG free text desc.N6-methyladenosine-containing RNA binding
EggNOG OGsCOG5084@1,KOG1040@2759,KOG1902@1,KOG1902@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size126
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929636.5829556-CDS-H-elongata_contig111222:2011..21371622929636.5829556-CDS-H-elongata_contig111222:2011..2137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111222 2012..2137 +
1691679100.5542006-CDS-H-elongata_contig111222:2011..21371691679100.5542006-CDS-H-elongata_contig111222:2011..2137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111222 2012..2137 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111222.920.1prot_H-elongata_contig111222.920.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111222 2012..2137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111222.920.1

>prot_H-elongata_contig111222.920.1 ID=prot_H-elongata_contig111222.920.1|Name=mRNA_H-elongata_contig111222.920.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
RWRTDCQVEGCAFRHEEEQEAPECAMYQHGFCRHGPHCRFR*
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mRNA from alignment at H-elongata_contig111222:2012..2137+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111222.920.1 ID=mRNA_H-elongata_contig111222.920.1|Name=mRNA_H-elongata_contig111222.920.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at H-elongata_contig111222:2012..2137+ (Himanthalia elongata Himel1 dioecious)
AGATGGCGAACGGACTGCCAGGTGGAAGGGTGCGCTTTCCGACACGAGGA
GGAGCAGGAGGCCCCCGAGTGCGCCATGTATCAGCATGGCTTTTGTCGCC
ACGGCCCACACTGTCGCTTTAGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig111222:2012..2137+

>mRNA_H-elongata_contig111222.920.1 ID=mRNA_H-elongata_contig111222.920.1|Name=mRNA_H-elongata_contig111222.920.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig111222:2012..2137+ (Himanthalia elongata Himel1 dioecious)
AGATGGCGAACGGACTGCCAGGTGGAAGGGTGCGCTTTCCGACACGAGGA
GGAGCAGGAGGCCCCCGAGTGCGCCATGTATCAGCATGGCTTTTGTCGCC
ACGGCCCACACTGTCGCTTTAGGTAGAGATGGCGAACGGACTGCCAGGTG
GAAGGGTGCGCTTTCCGACACGAGGAGGAGCAGGAGGCCCCCGAGTGCGC
CATGTATCAGCATGGCTTTTGTCGCCACGGCCCACACTGTCGCTTTAGGT
AG
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