mRNA_H-elongata_contig111213.918.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111213.918.1
Unique NamemRNA_H-elongata_contig111213.918.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig111213.918.1 vs. uniprot
Match: A0A6H5K7D8_9PHAE (CobW C-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7D8_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 9.990e-20
Identity = 41/44 (93.18%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:   10 QTDQLFHKWHPLMEHLRTEQPRLRFLVRMKPDGSGPLDNMCGCC 141
            QTDQLFHKWHPLME LR E PRLRFLVRMKPDGSGPLDNMCGCC
Sbjct:  895 QTDQLFHKWHPLMESLRAE-PRLRFLVRMKPDGSGPLDNMCGCC 937
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BLAST of mRNA_H-elongata_contig111213.918.1 vs. uniprot
Match: A0A7S4G9Z6_9EUGL (Hypothetical protein n=3 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4G9Z6_9EUGL)

HSP 1 Score: 75.1 bits (183), Expect = 1.390e-14
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:   10 QTDQLFHKWHPLMEHLRTEQPRLRFLVRMKPDGSGPLDNMCGCC 141
            ++D +FHKWHPLM  LRT  PRLR L+R+KPDGSGPLD MCGCC
Sbjct:  462 ESDAVFHKWHPLMAQLRT-MPRLRLLIRVKPDGSGPLDTMCGCC 504
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BLAST of mRNA_H-elongata_contig111213.918.1 vs. uniprot
Match: A0A812J8Y9_9DINO (Cbwd1 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812J8Y9_9DINO)

HSP 1 Score: 69.7 bits (169), Expect = 1.100e-12
Identity = 29/43 (67.44%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:   13 TDQLFHKWHPLMEHLRTEQPRLRFLVRMKPDGSGPLDNMCGCC 141
            T+++FH+WHPLM+ LR  +PRLRFL+R+KP  SGPLD+MCGCC
Sbjct:  765 TNEVFHQWHPLMDGLR-RRPRLRFLIRLKPMDSGPLDSMCGCC 806
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BLAST of mRNA_H-elongata_contig111213.918.1 vs. uniprot
Match: A0A1Q9DSB4_SYMMI (Uncharacterized protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9DSB4_SYMMI)

HSP 1 Score: 69.3 bits (168), Expect = 1.210e-12
Identity = 29/43 (67.44%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:   13 TDQLFHKWHPLMEHLRTEQPRLRFLVRMKPDGSGPLDNMCGCC 141
            T+++FH+WHPLM+ LR  +PRLRFL+R+KP  SGPLD MCGCC
Sbjct:  298 TNEVFHQWHPLMDGLR-RRPRLRFLIRLKPMDSGPLDGMCGCC 339
[Close]
BLAST of mRNA_H-elongata_contig111213.918.1 vs. uniprot
Match: A0A7S0Q4E2_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q4E2_9EUKA)

HSP 1 Score: 67.8 bits (164), Expect = 5.260e-12
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:   10 QTDQLFHKWHPLMEHLRTEQPRLRFLVRMKPDGSGPLDNMCGCC 141
            ++ +LFHKWHPLM  LR   PR+R L+R KPDGSGPL +MCGCC
Sbjct:  777 ESKELFHKWHPLMVGLR-RNPRIRMLIRAKPDGSGPLGDMCGCC 819
[Close]
BLAST of mRNA_H-elongata_contig111213.918.1 vs. uniprot
Match: A0A7S2GXT0_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2GXT0_9EUKA)

HSP 1 Score: 65.9 bits (159), Expect = 5.470e-12
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:   25 FHKWHPLMEHLRTEQPRLRFLVRMKPDGSGPLDNMCGCC 141
            FH+WHPL+  LRT  PR+R LVR+KPDGSGPL +MCGCC
Sbjct:  153 FHQWHPLLASLRTT-PRMRMLVRVKPDGSGPLADMCGCC 190
[Close]
BLAST of mRNA_H-elongata_contig111213.918.1 vs. uniprot
Match: A0A7S4F3Q4_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F3Q4_CHRCT)

HSP 1 Score: 65.5 bits (158), Expect = 3.430e-11
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   10 QTDQLFHKWHPLMEHLRTEQPRLRFLVRMKPDGSGPLDNMCGCC 141
            ++ +LFHKWHPLM  LR   P +R L+R KPDGSGPL +MCGCC
Sbjct:  815 ESKELFHKWHPLMVGLR-RNPAIRMLIRAKPDGSGPLGDMCGCC 857
[Close]
BLAST of mRNA_H-elongata_contig111213.918.1 vs. uniprot
Match: A0A7S4T5I0_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4T5I0_9DINO)

HSP 1 Score: 64.3 bits (155), Expect = 8.750e-11
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:   13 TDQLFHKWHPLMEHLRTEQPRLRFLVRMKPDGSGPLDNMCGCC 141
            T ++FH+WHPLM  L+  +PRLRFL+R+KP  SGPLD MCGCC
Sbjct:  616 TKEVFHQWHPLMNGLK-RRPRLRFLLRLKPLESGPLDAMCGCC 657
[Close]
BLAST of mRNA_H-elongata_contig111213.918.1 vs. uniprot
Match: A0A813G2P0_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G2P0_POLGL)

HSP 1 Score: 63.5 bits (153), Expect = 1.640e-10
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:   13 TDQLFHKWHPLMEHLRTEQPRLRFLVRMKPDGSGPLDNMCGCC 141
            T ++FH+WHP+M  L+  +PRLRFL+R+KP  SGPLD MCGCC
Sbjct:  729 TKEVFHQWHPVMAGLK-RRPRLRFLLRLKPMDSGPLDAMCGCC 770
[Close]
BLAST of mRNA_H-elongata_contig111213.918.1 vs. uniprot
Match: R1C4A2_EMIHU (CobW C-terminal domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C4A2_EMIHU)

HSP 1 Score: 61.6 bits (148), Expect = 7.810e-10
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   25 FHKWHPLMEHLR-TEQPRLRFLVRMKPDGSGPLDNMCGCC 141
            FH+WHPL   L  +  PR+R L+R+KPDGSGPL +MCGCC
Sbjct:  774 FHRWHPLFASLEHSASPRVRMLIRVKPDGSGPLGDMCGCC 813
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111213.918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5K7D8_9PHAE9.990e-2093.18CobW C-terminal domain-containing protein n=2 Tax=... [more]
A0A7S4G9Z6_9EUGL1.390e-1472.73Hypothetical protein n=3 Tax=Eutreptiella gymnasti... [more]
A0A812J8Y9_9DINO1.100e-1267.44Cbwd1 protein n=1 Tax=Symbiodinium sp. CCMP2592 Ta... [more]
A0A1Q9DSB4_SYMMI1.210e-1267.44Uncharacterized protein n=3 Tax=Symbiodinium TaxID... [more]
A0A7S0Q4E2_9EUKA5.260e-1265.91Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S2GXT0_9EUKA5.470e-1271.79Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S4F3Q4_CHRCT3.430e-1163.64Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A7S4T5I0_9DINO8.750e-1165.12Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A813G2P0_POLGL1.640e-1062.79Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
R1C4A2_EMIHU7.810e-1062.50CobW C-terminal domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111213contigH-elongata_contig111213:79..222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue1.3e-16
Seed eggNOG ortholog2880.D7G996
EggNOG free text desc.ATP binding
EggNOG OGsCOG0523@1,KOG2743@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929636.4839764-CDS-H-elongata_contig111213:78..2221622929636.4839764-CDS-H-elongata_contig111213:78..222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111213 79..222 +
1691679100.5304844-CDS-H-elongata_contig111213:78..2221691679100.5304844-CDS-H-elongata_contig111213:78..222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111213 79..222 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111213.918.1prot_H-elongata_contig111213.918.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111213 79..222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111213.918.1

>prot_H-elongata_contig111213.918.1 ID=prot_H-elongata_contig111213.918.1|Name=mRNA_H-elongata_contig111213.918.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
PPHQTDQLFHKWHPLMEHLRTEQPRLRFLVRMKPDGSGPLDNMCGCC*
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mRNA from alignment at H-elongata_contig111213:79..222+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111213.918.1 ID=mRNA_H-elongata_contig111213.918.1|Name=mRNA_H-elongata_contig111213.918.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig111213:79..222+ (Himanthalia elongata Himel1 dioecious)
CCCCCTCATCAGACCGACCAGCTCTTCCACAAGTGGCATCCTCTCATGGA
GCACCTACGCACCGAGCAGCCACGCCTGAGGTTCTTGGTGAGGATGAAGC
CCGACGGAAGTGGTCCGCTGGACAACATGTGCGGATGCTGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig111213:79..222+

>mRNA_H-elongata_contig111213.918.1 ID=mRNA_H-elongata_contig111213.918.1|Name=mRNA_H-elongata_contig111213.918.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig111213:79..222+ (Himanthalia elongata Himel1 dioecious)
CCCCCTCATCAGACCGACCAGCTCTTCCACAAGTGGCATCCTCTCATGGA
GCACCTACGCACCGAGCAGCCACGCCTGAGGTTCTTGGTGAGGATGAAGC
CCGACGGAAGTGGTCCGCTGGACAACATGTGCGGATGCTGTTGACCCCCT
CATCAGACCGACCAGCTCTTCCACAAGTGGCATCCTCTCATGGAGCACCT
ACGCACCGAGCAGCCACGCCTGAGGTTCTTGGTGAGGATGAAGCCCGACG
GAAGTGGTCCGCTGGACAACATGTGCGGATGCTGTTGA
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