mRNA_H-elongata_contig111174.916.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111174.916.1
Unique NamemRNA_H-elongata_contig111174.916.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig111174.916.1 vs. uniprot
Match: D7G8H6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8H6_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 4.180e-23
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 1
Query:    1 SDLPPIWVPVAVLTVLVVGIGLLQGSLGDVMNDEAKLGGMSGARAGKQSARDRSMFKKKNE 183
            SDLPP+WVP+AV  VL +GIGLLQGSLGDVMNDEAKLG +SGARA KQSARDR MFKKK++
Sbjct:  109 SDLPPMWVPLAVGFVLTLGIGLLQGSLGDVMNDEAKLGALSGARAAKQSARDRDMFKKKDQ 169          
BLAST of mRNA_H-elongata_contig111174.916.1 vs. uniprot
Match: A0A836CD09_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD09_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.190e-16
Identity = 39/59 (66.10%), Postives = 49/59 (83.05%), Query Frame = 1
Query:    1 SDLPPIWVPVAVLTVLVVGIGLLQGSLGDVMNDEAKLGGMSGARAGKQSARDRSMFKKK 177
             +LPP+WVP+ +  V++ GIG  Q SLG+VM+DEAKLGG+SGARA KQSAR RSMFK+K
Sbjct:   48 DELPPMWVPLVLGAVVLAGIGAQQLSLGNVMDDEAKLGGLSGARAAKQSARGRSMFKRK 106          
BLAST of mRNA_H-elongata_contig111174.916.1 vs. uniprot
Match: A0A7S3PV07_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PV07_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 5.310e-12
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 SDLPPIWVPVAVLTVLVVGIGLLQGSLGDVMNDEAKLGGMSGARAGKQSARDRSMFKKK 177
            ++LPP+WVP+    V++ G+GLL  SLGDVMN+EA LG MSGA+A K+  R RS + KK
Sbjct:   78 AELPPVWVPILFAIVIIGGVGLLTFSLGDVMNEEASLGLMSGAKAKKEKERSRSSYFKK 136          
BLAST of mRNA_H-elongata_contig111174.916.1 vs. uniprot
Match: A0A6U1XMR7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A6U1XMR7_TRICV)

HSP 1 Score: 65.9 bits (159), Expect = 5.500e-12
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 SDLPPIWVPVAVLTVLVVGIGLLQGSLGDVMNDEAKLGGMSGARAGKQSARDRSMFKKK 177
            ++LPP+WVP+     ++ G+GLL GSLGDVM+DEA LG MSGA+A K+  R RS + KK
Sbjct:   95 AELPPVWVPIVFAIAILGGVGLLTGSLGDVMSDEASLGLMSGAQAKKEMERSRSSYFKK 153          
BLAST of mRNA_H-elongata_contig111174.916.1 vs. uniprot
Match: A0A7R9ZRN9_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZRN9_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.380e-11
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 SDLPPIWVPVAVLTVLVVGIGLLQGSLGDVMNDEAKLGGMSGARAGKQSARDRSMFKKK 177
            ++LPP+WVP     VL+VG+GLL GSLG+V+++E+ LG  SGARA K+  R RS + KK
Sbjct:   65 AELPPVWVPAVFALVLLVGVGLLTGSLGNVIDEESMLGLQSGARAKKEIERSRSSYFKK 123          
BLAST of mRNA_H-elongata_contig111174.916.1 vs. uniprot
Match: A0A7S3Y243_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y243_HETAK)

HSP 1 Score: 60.5 bits (145), Expect = 3.950e-9
Identity = 32/51 (62.75%), Postives = 38/51 (74.51%), Query Frame = 1
Query:    1 SDLPPIWVPVAVLTVLVVGIGLLQGSLGDVMNDEAKLGGMSGARAGKQSAR 153
             +LPP+WVP+A   VL VGIG+LQ SLGDVM  EA LG  SGARA K++ R
Sbjct:  462 EELPPMWVPLATGAVLFVGIGVLQASLGDVMEAEAGLGSASGARARKENTR 512          
BLAST of mRNA_H-elongata_contig111174.916.1 vs. uniprot
Match: A0A6U1Q394_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1Q394_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.320e-9
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 1
Query:    7 LPPIWVPVAVLTVLVVGIGLLQGSLGDVMNDEAKLGGMSGARAGKQSARDRSMF 168
            LPP WVPV V   L+ G+GLLQ SLG+V +DEA LG  SGARA K+S R++   
Sbjct:   89 LPPFWVPVGVAIALLGGVGLLQLSLGNVADDEAMLGSASGARARKESTRNKKFL 142          
BLAST of mRNA_H-elongata_contig111174.916.1 vs. uniprot
Match: A0A1Z5K2E8_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K2E8_FISSO)

HSP 1 Score: 55.8 bits (133), Expect = 1.670e-8
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 SDLPPIWVPVAVLTVLVVGIGLLQGSLGDVMNDEAKLGGMSGARAGKQSARDRSMFKKK 177
            ++LPP +VPV V   L+VG+G+L  SLG+VM++EA LG  SGARA K+  R RS + KK
Sbjct:   49 AELPPPYVPVLVGLGLLVGVGVLTSSLGNVMDEEASLGMQSGARAKKEIERSRSSYFKK 107          
BLAST of mRNA_H-elongata_contig111174.916.1 vs. uniprot
Match: A0A7S2V989_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2V989_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 2.630e-8
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 SDLPPIWVPVAVLTVLVVGIGLLQGSLGDVMNDEAKLGGMSGARAGKQSARDRSMFKKK 177
            ++LPP +VP      L+VG+GLL GSLG+VM++EA LG  SGARA K+  R RS + KK
Sbjct:   90 AELPPPYVPALFGVGLLVGVGLLTGSLGNVMDEEASLGMQSGARAKKEIERSRSSYFKK 148          
BLAST of mRNA_H-elongata_contig111174.916.1 vs. uniprot
Match: A0A7S2XRK3_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XRK3_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 5.150e-8
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 1
Query:    1 SDLPPIWVPVAVLTVLVVGIGLLQGSLGDVMNDEAKLGGMSGARAGKQSARDRSMFKKK 177
             +LPP +  V     ++ G+GLL GSLGDVM +EA+LG MSGARA K+  R RS + KK
Sbjct:  110 EELPPPYFAVVFAIAILGGVGLLTGSLGDVMTEEAQLGMMSGARAKKEKERSRSSYFKK 168          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111174.916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7G8H6_ECTSI4.180e-2380.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CD09_9STRA2.190e-1666.10Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3PV07_9STRA5.310e-1255.93Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6U1XMR7_TRICV5.500e-1255.93Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7R9ZRN9_9STRA6.380e-1154.24Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S3Y243_HETAK3.950e-962.75Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U1Q394_9STRA4.320e-957.41Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1Z5K2E8_FISSO1.670e-854.24Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S2V989_9STRA2.630e-854.24Hypothetical protein n=2 Tax=Amphiprora paludosa T... [more]
A0A7S2XRK3_9STRA5.150e-852.54Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111174contigH-elongata_contig111174:275..466 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_003060.1
Exons1
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929636.3769228-CDS-H-elongata_contig111174:274..4661622929636.3769228-CDS-H-elongata_contig111174:274..466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111174 275..466 -
1691679100.5153487-CDS-H-elongata_contig111174:274..4661691679100.5153487-CDS-H-elongata_contig111174:274..466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111174 275..466 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111174.916.1prot_H-elongata_contig111174.916.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111174 275..466 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111174.916.1

>prot_H-elongata_contig111174.916.1 ID=prot_H-elongata_contig111174.916.1|Name=mRNA_H-elongata_contig111174.916.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
SDLPPIWVPVAVLTVLVVGIGLLQGSLGDVMNDEAKLGGMSGARAGKQSA
RDRSMFKKKNEDP*
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mRNA from alignment at H-elongata_contig111174:275..466-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111174.916.1 ID=mRNA_H-elongata_contig111174.916.1|Name=mRNA_H-elongata_contig111174.916.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig111174:275..466- (Himanthalia elongata Himel1 dioecious)
AGTGACTTGCCTCCCATCTGGGTTCCGGTGGCGGTGTTGACGGTACTCGT GGTGGGAATCGGTCTGTTACAGGGGAGCTTGGGCGATGTGATGAACGATG AAGCGAAACTCGGTGGCATGTCGGGGGCGAGGGCGGGGAAGCAGAGTGCT CGCGATAGAAGCATGTTCAAGAAAAAGAATGAGGATCCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig111174:275..466-

>mRNA_H-elongata_contig111174.916.1 ID=mRNA_H-elongata_contig111174.916.1|Name=mRNA_H-elongata_contig111174.916.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig111174:275..466- (Himanthalia elongata Himel1 dioecious)
AGTGACTTGCCTCCCATCTGGGTTCCGGTGGCGGTGTTGACGGTACTCGT
GGTGGGAATCGGTCTGTTACAGGGGAGCTTGGGCGATGTGATGAACGATG
AAGCGAAACTCGGTGGCATGTCGGGGGCGAGGGCGGGGAAGCAGAGTGCT
CGCGATAGAAGCATGTTCAAGAAAAAGAATGAGGATCCATGAAGTGACTT
GCCTCCCATCTGGGTTCCGGTGGCGGTGTTGACGGTACTCGTGGTGGGAA
TCGGTCTGTTACAGGGGAGCTTGGGCGATGTGATGAACGATGAAGCGAAA
CTCGGTGGCATGTCGGGGGCGAGGGCGGGGAAGCAGAGTGCTCGCGATAG
AAGCATGTTCAAGAAAAAGAATGAGGATCCATGA
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