mRNA_H-elongata_contig111153.914.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111153.914.1
Unique NamemRNA_H-elongata_contig111153.914.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig111153.914.1 vs. uniprot
Match: D7FPN6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPN6_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 3.130e-24
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:    1 IQVLGKSCKPIPVMLMGALMGKKYPLKKYINVGLIVAGVALFMQSGSGAGKPGG 162
            +QVLGKSCKPIPVMLMGA +GKKYPLKKY+NV LIVAGVALFMQSGSGAGKPGG
Sbjct:  132 VQVLGKSCKPIPVMLMGAFLGKKYPLKKYLNVALIVAGVALFMQSGSGAGKPGG 185
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BLAST of mRNA_H-elongata_contig111153.914.1 vs. uniprot
Match: A0A835YUC6_9STRA (UAA transporter family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUC6_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 7.660e-19
Identity = 42/55 (76.36%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 IQVLGKSCKPIPVMLMGALMGKKYPLKKYINVGLIVAGVALFMQSGSGAGKPGGD 165
            +QVL KSCKPIPVMLMGA MGKKYPLKKY+NV +IV GVA+FM  G GAGK G D
Sbjct:  185 VQVLAKSCKPIPVMLMGAAMGKKYPLKKYVNVIMIVCGVAMFMGGGKGAGKSGAD 239
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BLAST of mRNA_H-elongata_contig111153.914.1 vs. uniprot
Match: A0A7S4D835_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D835_HETAK)

HSP 1 Score: 80.9 bits (198), Expect = 1.030e-16
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 IQVLGKSCKPIPVMLMGALMGKKYPLKKYINVGLIVAGVALFMQSG 138
            IQVL KSCKP+PVMLMGA+MGKKYPLKKY+NV +IV GVALFMQ G
Sbjct:  135 IQVLAKSCKPVPVMLMGAVMGKKYPLKKYVNVCVIVTGVALFMQKG 180
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BLAST of mRNA_H-elongata_contig111153.914.1 vs. uniprot
Match: B8C186_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C186_THAPS)

HSP 1 Score: 79.3 bits (194), Expect = 2.630e-16
Identity = 40/55 (72.73%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 IQVLGKSCKPIPVMLMGALMGKKYPLKKYINVGLIVAGVALFMQSGSGAGKPGGD 165
            IQVL KSCKP+PVMLMGALMGKKYP KKY+ V LIV GV LFM  GS + K  GD
Sbjct:   47 IQVLAKSCKPVPVMLMGALMGKKYPPKKYMKVALIVGGVGLFMGGGSKSKKAAGD 101
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BLAST of mRNA_H-elongata_contig111153.914.1 vs. uniprot
Match: A0A7S3K3V6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K3V6_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 5.320e-16
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 IQVLGKSCKPIPVMLMGALMGKKYPLKKYINVGLIVAGVALFMQSGSGAGK 153
            +QVL KSCKPIPVMLMGA++GK+YP+KKYINV LI  GVALFM  G+GA K
Sbjct:  112 VQVLAKSCKPIPVMLMGAVLGKRYPMKKYINVLLITVGVALFMGGGTGAVK 162
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BLAST of mRNA_H-elongata_contig111153.914.1 vs. uniprot
Match: A0A7S1BDX9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BDX9_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 7.980e-16
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 IQVLGKSCKPIPVMLMGALMGKKYPLKKYINVGLIVAGVALFMQSG 138
            IQVLG+SCKPIPVM MGALMGKKYPLKKY+N+ LIV GVA+FM  G
Sbjct:  199 IQVLGRSCKPIPVMFMGALMGKKYPLKKYVNIFLIVIGVAMFMVGG 244
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BLAST of mRNA_H-elongata_contig111153.914.1 vs. uniprot
Match: B7FP10_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FP10_PHATC)

HSP 1 Score: 79.0 bits (193), Expect = 8.180e-16
Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 IQVLGKSCKPIPVMLMGALMGKKYPLKKYINVGLIVAGVALFMQSGSGAGK 153
            IQVL KSCKP+PVM+MGA MGK YPL+KYINV +IVAGVALFM  G G  K
Sbjct:  237 IQVLAKSCKPVPVMIMGAFMGKHYPLRKYINVVMIVAGVALFMGGGDGDNK 287
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BLAST of mRNA_H-elongata_contig111153.914.1 vs. uniprot
Match: A0A7S1CW94_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CW94_CYCTE)

HSP 1 Score: 78.2 bits (191), Expect = 9.540e-16
Identity = 38/46 (82.61%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 IQVLGKSCKPIPVMLMGALMGKKYPLKKYINVGLIVAGVALFMQSG 138
            IQVL KSCKP+PVM+MGA MGKKYPLKKYINV LIV GVALFM  G
Sbjct:   80 IQVLAKSCKPVPVMIMGAFMGKKYPLKKYINVCLIVLGVALFMGGG 125
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BLAST of mRNA_H-elongata_contig111153.914.1 vs. uniprot
Match: F0XW55_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XW55_AURAN)

HSP 1 Score: 78.2 bits (191), Expect = 1.120e-15
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 IQVLGKSCKPIPVMLMGALMGKKYPLKKYINVGLIVAGVALFMQSGSGAGKPGGD 165
            +QVL KSCKPIPVM+MGA +GK+YPLKKY+NV +I AGV LFM  GS A KPG D
Sbjct:  112 VQVLAKSCKPIPVMIMGAFLGKRYPLKKYVNVLVITAGVCLFMLGGS-ATKPGDD 165
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BLAST of mRNA_H-elongata_contig111153.914.1 vs. uniprot
Match: A0A1Z5JET0_FISSO (Solute carrier family 35 (UDP-galactose transporter), member B1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JET0_FISSO)

HSP 1 Score: 78.2 bits (191), Expect = 1.460e-15
Identity = 38/55 (69.09%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 IQVLGKSCKPIPVMLMGALMGKKYPLKKYINVGLIVAGVALFMQSGSGAGKPGGD 165
            IQVL KSCKP+PVMLMG LMGK+YPL+KYINV +IV GVA+FM  G    K  GD
Sbjct:  201 IQVLAKSCKPVPVMLMGTLMGKRYPLRKYINVVMIVLGVAMFMGGGDSKHKGSGD 255
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111153.914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPN6_ECTSI3.130e-2490.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YUC6_9STRA7.660e-1976.36UAA transporter family-domain-containing protein n... [more]
A0A7S4D835_HETAK1.030e-1682.61Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
B8C186_THAPS2.630e-1672.73Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S3K3V6_9STRA5.320e-1674.51Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S1BDX9_9STRA7.980e-1680.43Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
B7FP10_PHATC8.180e-1674.51Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S1CW94_CYCTE9.540e-1682.61Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
F0XW55_AURAN1.120e-1570.91Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A1Z5JET0_FISSO1.460e-1569.09Solute carrier family 35 (UDP-galactose transporte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111153contigH-elongata_contig111153:1730..1894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue1.9e-19
Seed eggNOG ortholog2880.D7FPN6
Preferred nameSLC35B1
KEGG koko:K09228,ko:K14558,ko:K15275
KEGG TC2.A.7.11.1,2.A.7.11.4
KEGG Pathwayko03008,map03008
GOsGO:0000139,GO:0000902,GO:0000904,GO:0002119,GO:0002164,GO:0003674,GO:0005215,GO:0005338,GO:0005459,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0006464,GO:0006486,GO:0006487,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006928,GO:0006935,GO:0006950,GO:0006996,GO:0007029,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009605,GO:0009653,GO:0009791,GO:0009987,GO:0010256,GO:0012505,GO:0015165,GO:0015711,GO:0015780,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0016043,GO:0016358,GO:0019538,GO:0022008,GO:0022857,GO:0030030,GO:0030154,GO:0030173,GO:0030176,GO:0030182,GO:0031090,GO:0031175,GO:0031224,GO:0031227,GO:0031228,GO:0031300,GO:0031301,GO:0031984,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0033554,GO:0034220,GO:0034645,GO:0034976,GO:0036211,GO:0040011,GO:0042175,GO:0042221,GO:0042330,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048468,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0061564,GO:0070085,GO:0070983,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072334,GO:0090481,GO:0097485,GO:0098588,GO:0098656,GO:0098791,GO:0098827,GO:0120036,GO:0120039,GO:1901135,GO:1901137,GO:1901264,GO:1901505,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.UDP-galactose transmembrane transporter activity
EggNOG OGsCOG0697@1,KOG1580@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko03000,ko03009
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionUAA transporter
Ec32 orthologEc-16_001300.1
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929636.2782671-CDS-H-elongata_contig111153:1729..18941622929636.2782671-CDS-H-elongata_contig111153:1729..1894Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111153 1730..1894 +
1691679100.4941168-CDS-H-elongata_contig111153:1729..18941691679100.4941168-CDS-H-elongata_contig111153:1729..1894Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111153 1730..1894 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111153.914.1prot_H-elongata_contig111153.914.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111153 1730..1894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111153.914.1

>prot_H-elongata_contig111153.914.1 ID=prot_H-elongata_contig111153.914.1|Name=mRNA_H-elongata_contig111153.914.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
IQVLGKSCKPIPVMLMGALMGKKYPLKKYINVGLIVAGVALFMQSGSGAG
KPGGD
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mRNA from alignment at H-elongata_contig111153:1730..1894+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111153.914.1 ID=mRNA_H-elongata_contig111153.914.1|Name=mRNA_H-elongata_contig111153.914.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig111153:1730..1894+ (Himanthalia elongata Himel1 dioecious)
ATCCAGGTCCTCGGGAAGAGCTGTAAACCTATTCCGGTGATGCTTATGGG
GGCGCTCATGGGGAAGAAGTACCCGCTCAAGAAGTACATCAACGTGGGAC
TCATCGTTGCCGGTGTTGCTTTGTTCATGCAGTCCGGCTCGGGGGCGGGG
AAGCCGGGAGGGGAC
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Coding sequence (CDS) from alignment at H-elongata_contig111153:1730..1894+

>mRNA_H-elongata_contig111153.914.1 ID=mRNA_H-elongata_contig111153.914.1|Name=mRNA_H-elongata_contig111153.914.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig111153:1730..1894+ (Himanthalia elongata Himel1 dioecious)
ATCCAGGTCCTCGGGAAGAGCTGTAAACCTATTCCGGTGATGCTTATGGG
GGCGCTCATGGGGAAGAAGTACCCGCTCAAGAAGTACATCAACGTGGGAC
TCATCGTTGCCGGTGTTGCTTTGTTCATGCAGTCCGGCTCGGGGGCGGGG
AAGCCGGGAGGGGACATCCAGGTCCTCGGGAAGAGCTGTAAACCTATTCC
GGTGATGCTTATGGGGGCGCTCATGGGGAAGAAGTACCCGCTCAAGAAGT
ACATCAACGTGGGACTCATCGTTGCCGGTGTTGCTTTGTTCATGCAGTCC
GGCTCGGGGGCGGGGAAGCCGGGAGGGGAC
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