mRNA_H-elongata_contig111149.912.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig111149.912.1 vs. uniprot
Match: A0A4S4L7S0_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4L7S0_9AGAM) HSP 1 Score: 140 bits (353), Expect = 3.950e-37 Identity = 78/195 (40.00%), Postives = 116/195 (59.49%), Query Frame = 1
Query: 1 FPIKDLGEASYYLGYHITRDRNAGTLTFDQHQYIQTMAERFSVTK-TSIIPSVTGGKNLSKSDSPQTDAEVK*MHQIPYQ*IVGALMWAATMTRPDISFAAHQLAKFNDTPGPTHWRATQKALQYLWRTRDLGITYGGEPGGGCKLSAWFDADYGTFPGTRRSVSGGAVMMAGGAISLFSRVQKVTAAASSESEY 582
F + DLG S+ LG + RDR+ L+ Q QYI + ERF ++ T++ + G LSK+ +P+ E+ M +PY+ +VGALM+ A TRPDIS+A LA+F+ PGP HW+A + +YL T+D+ +TY +P + + DAD+G RRS SG V M GAIS SR+Q + +++E+EY
Sbjct: 22 FKLHDLGPTSFLLGVRVERDRSKRLLSLSQRQYIIDILERFEMSNCTTVTTPLPDGHRLSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGHWKAAKHLCRYLQGTKDMKLTYAPDPHAPELFTTFSDADHGGDEDNRRSTSGMVVKMGTGAISWASRLQTIVTLSTTEAEY 216
BLAST of mRNA_H-elongata_contig111149.912.1 vs. uniprot
Match: A0A4S4KQD1_9AGAM (DOMON domain-containing protein n=1 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4KQD1_9AGAM) HSP 1 Score: 140 bits (354), Expect = 1.030e-35 Identity = 78/195 (40.00%), Postives = 117/195 (60.00%), Query Frame = 1
Query: 1 FPIKDLGEASYYLGYHITRDRNAGTLTFDQHQYIQTMAERFSVTK-TSIIPSVTGGKNLSKSDSPQTDAEVK*MHQIPYQ*IVGALMWAATMTRPDISFAAHQLAKFNDTPGPTHWRATQKALQYLWRTRDLGITYGGEPGGGCKLSAWFDADYGTFPGTRRSVSGGAVMMAGGAISLFSRVQKVTAAASSESEY 582
F + DLG S+ LG + RDR+ L+ Q QYI + ERF ++ T++ + G LSK+ +P+ E+ M +PY+ +VGALM+ A TRPDIS+A LA+F+ PGP+HW+A + +YL T+D+ +TY +P + + DAD+G RRS SG V M GAIS SR+Q + +++E+EY
Sbjct: 239 FKLHDLGPTSFLLGVRVERDRSKRLLSLSQRQYIIDILERFEMSNCTTVTTPLPDGHRLSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPSHWKAAKHLCRYLQGTKDMKLTYTPDPHAPELFTTFSDADHGGDEDNRRSTSGMVVKMGTGAISWASRLQTIVTLSTTEAEY 433
BLAST of mRNA_H-elongata_contig111149.912.1 vs. uniprot
Match: A0A4S4LBP1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4LBP1_9AGAM) HSP 1 Score: 137 bits (344), Expect = 1.710e-35 Identity = 76/192 (39.58%), Postives = 114/192 (59.38%), Query Frame = 1
Query: 1 FPIKDLGEASYYLGYHITRDRNAGTLTFDQHQYIQTMAERFSVTK-TSIIPSVTGGKNLSKSDSPQTDAEVK*MHQIPYQ*IVGALMWAATMTRPDISFAAHQLAKFNDTPGPTHWRATQKALQYLWRTRDLGITYGGEPGGGCKLSAWFDADYGTFPGTRRSVSGGAVMMAGGAISLFSRVQKVTAAASSE 573
F + DLG S+ LG + RDR+ L+ Q QYI + ERF ++ T++ + G LSK+ +P+ E+ M +PY+ +VGALM+ A TRPDIS+A LA+F+ PGP+HW+A + +YL T+D+ +TY +P + + DAD+G RRS SG V M GAIS SR+Q + +++E
Sbjct: 162 FKLHDLGPTSFLLGVRVERDRSKRLLSLSQRQYIIDILERFEMSNCTTVTTPLPDGHRLSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPSHWKAAKHLCRYLQGTKDMKLTYAPDPHAPELFTTFSDADHGGDEDNRRSTSGMVVKMGTGAISWASRLQTIVTLSTTE 353
BLAST of mRNA_H-elongata_contig111149.912.1 vs. uniprot
Match: A0A4S4KQ60_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4KQ60_9AGAM) HSP 1 Score: 140 bits (352), Expect = 4.190e-35 Identity = 78/195 (40.00%), Postives = 116/195 (59.49%), Query Frame = 1
Query: 1 FPIKDLGEASYYLGYHITRDRNAGTLTFDQHQYIQTMAERFSVTK-TSIIPSVTGGKNLSKSDSPQTDAEVK*MHQIPYQ*IVGALMWAATMTRPDISFAAHQLAKFNDTPGPTHWRATQKALQYLWRTRDLGITYGGEPGGGCKLSAWFDADYGTFPGTRRSVSGGAVMMAGGAISLFSRVQKVTAAASSESEY 582
F + DLG S+ LG + RDR+ L+ Q QYI + ERF ++ T++ + G LSK+ +P+ E+ M +PY+ +VGALM+ A TRPDIS+A LA+F+ PGP HW+A + +YL T+D+ +TY +P + + DAD+G RRS SG V M GAIS SR+Q + +++E+EY
Sbjct: 328 FKLHDLGPTSFLLGVRVERDRSKCLLSLSQRQYIIDILERFEMSNCTTVTTPLPDGHRLSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGHWKAAKHLCRYLQGTKDMKLTYAPDPHAPELFTTFSDADHGGDEDNRRSTSGMVVKMGTGAISWASRLQTIVTLSTTEAEY 522
BLAST of mRNA_H-elongata_contig111149.912.1 vs. uniprot
Match: A0A4S4KX50_9AGAM (Integrase catalytic domain-containing protein n=2 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4KX50_9AGAM) HSP 1 Score: 140 bits (352), Expect = 8.720e-35 Identity = 78/195 (40.00%), Postives = 116/195 (59.49%), Query Frame = 1
Query: 1 FPIKDLGEASYYLGYHITRDRNAGTLTFDQHQYIQTMAERFSVTK-TSIIPSVTGGKNLSKSDSPQTDAEVK*MHQIPYQ*IVGALMWAATMTRPDISFAAHQLAKFNDTPGPTHWRATQKALQYLWRTRDLGITYGGEPGGGCKLSAWFDADYGTFPGTRRSVSGGAVMMAGGAISLFSRVQKVTAAASSESEY 582
F + DLG S+ LG + RDR+ L+ Q QYI + ERF ++ T++ + G LSK+ +P+ E+ M +PY+ +VGALM+ A TRPDIS+A LA+F+ PGP HW+A + +YL T+D+ +TY +P + + DAD+G RRS SG V M GAIS SR+Q + +++E+EY
Sbjct: 862 FKLHDLGPTSFLLGVRVERDRSKRLLSLSQRQYIIDILERFEMSNCTTVTTPLPDGHRLSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGHWKAAKHLCRYLQGTKDMKLTYAPDPYAPELFTTFSDADHGGDEDNRRSTSGMVVKMGTGAISWASRLQTIVTLSTTEAEY 1056
BLAST of mRNA_H-elongata_contig111149.912.1 vs. uniprot
Match: W2WEK3_PHYPR (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora parasitica CJ01A1 TaxID=1317063 RepID=W2WEK3_PHYPR) HSP 1 Score: 136 bits (342), Expect = 1.920e-33 Identity = 77/198 (38.89%), Postives = 117/198 (59.09%), Query Frame = 1
Query: 1 FPIKDLGEASYYLGYHITRDRNAGTLTFDQHQYIQTMAERFSVTKTSIIPS-VTGGKNLSKSDSPQTDAEVK*MHQIPYQ*IVGALMWAATMTRPDISFAAHQLAKFNDTPGPTHWRATQKALQYLWRTRDLGITYGGEPGGGCKLSAWFDADYGTFPGTRRSVSGGAVMMAGGAISLFSRVQKVTAAASSESEYAAL 591
F +K+LGEA + LG I D ++ TL Q +YI + ERF ++ + G L+ + SP AE M + Y+ ++G L++ T TRPD+++ QL++F + PG HW+A + L+YL TR+LGI Y G G KL+A+ DAD+G+ P RRSVSG V ++G + S+ Q+ A +S+E+EY AL
Sbjct: 924 FKMKELGEAKFILGMEINHDYSSKTLMIKQTRYIDDVVERFKQKDAKVVVNPCESGLKLTSAQSPTAQAERMEMQRKLYRALIGCLLYITTCTRPDVAYIVTQLSRFLENPGQQHWKAAIRVLRYLKGTRELGIVYSGTSSG-VKLTAYTDADWGSNPDDRRSVSGTMVTISGAPVIFKSKYQRTVALSSAEAEYMAL 1120
BLAST of mRNA_H-elongata_contig111149.912.1 vs. uniprot
Match: A0A4S4K4A0_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4K4A0_9AGAM) HSP 1 Score: 127 bits (319), Expect = 2.030e-33 Identity = 69/174 (39.66%), Postives = 101/174 (58.05%), Query Frame = 1
Query: 1 FPIKDLGEASYYLGYHITRDRNAGTLTFDQHQYIQTMAERFSVTK-TSIIPSVTGGKNLSKSDSPQTDAEVK*MHQIPYQ*IVGALMWAATMTRPDISFAAHQLAKFNDTPGPTHWRATQKALQYLWRTRDLGITYGGEPGGGCKLSAWFDADYGTFPGTRRSVSGGAVMMAGG 519
F + DLG S+ LG + RDR+ L+ Q QYI + ERF ++ T++ + G LSK+ +P+ E+ M +PY+ +VGALM+ A TRPDIS+A LA+F+ PGP HW+A + +YL T+D+ +TY +P + + DAD+G RRS SG V M G
Sbjct: 22 FKLHDLGPTSFLLGVRVERDRSKRLLSLSQRQYITDILERFEMSNCTTVTTPLPDGHRLSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGHWKAAKHLCRYLQGTKDMKLTYAPDPHAPELFTTFSDADHGGDEDNRRSTSGMVVKMGTG 195
BLAST of mRNA_H-elongata_contig111149.912.1 vs. uniprot
Match: A0A2N9J3H7_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J3H7_FAGSY) HSP 1 Score: 135 bits (341), Expect = 2.470e-33 Identity = 80/204 (39.22%), Postives = 118/204 (57.84%), Query Frame = 1
Query: 1 FPIKDLGEASYYLGYHITRDRNAGTLTFDQHQYIQTMAERFSVTKTSIIPS-VTGGKNLSKSDSPQTDAEVK*MHQIPYQ*IVGALMWAATMTRPDISFAAHQLAKFNDTPGPTHWRATQKALQYLWRTRDLGITYGGEPGGGCKLSAWFDADYGTFPGTRRSVSGGAVMMAGGAISLFSRVQKVTAAASSESEYAALAEMVNE 609
F +KD+GEA++ LG ITRDR+ L+ Q YI+ + ERF + + I + + G LS P+ D E M ++PY +G+LM+A TRPDI FA ++++ PGPTHWRA ++ L+YL T D + Y GG +L + DAD+ + R+S SG A ++ GGA+S S+ Q A ++ ESEY A + V E
Sbjct: 460 FEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILERFHMHNSKPIDTPMEKGCTLSLDQCPKNDEEKNQMSKVPYASAIGSLMYAMLCTRPDICFAVGMVSRYQSNPGPTHWRAVKRILRYLRGTSDHALCY---HGGDLRLIGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQE 660
BLAST of mRNA_H-elongata_contig111149.912.1 vs. uniprot
Match: A0A2N9H9J3_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9H9J3_FAGSY) HSP 1 Score: 135 bits (339), Expect = 4.570e-33 Identity = 79/204 (38.73%), Postives = 118/204 (57.84%), Query Frame = 1
Query: 1 FPIKDLGEASYYLGYHITRDRNAGTLTFDQHQYIQTMAERFSVTKTSIIPS-VTGGKNLSKSDSPQTDAEVK*MHQIPYQ*IVGALMWAATMTRPDISFAAHQLAKFNDTPGPTHWRATQKALQYLWRTRDLGITYGGEPGGGCKLSAWFDADYGTFPGTRRSVSGGAVMMAGGAISLFSRVQKVTAAASSESEYAALAEMVNE 609
F +KD+GEA++ LG ITRDR+ L+ Q YI+ + ERF + + I + + G LS P+ D E M ++PY +G+LM+A TRPDI FA ++++ PGP HWRA ++ L+YL T D + Y GG +L+ + DAD+ + R+S SG A ++ GGA+S S+ Q A ++ ESEY A + V E
Sbjct: 573 FEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILERFHMHNSKPIDTPMEKGCTLSLDQCPKNDEEKNQMSKVPYASAIGSLMYAMLCTRPDICFAVGMVSRYQSNPGPAHWRAVKRILRYLRGTSDHALCY---HGGDLRLTGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQE 773
BLAST of mRNA_H-elongata_contig111149.912.1 vs. uniprot
Match: A0A2N9F135_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F135_FAGSY) HSP 1 Score: 135 bits (339), Expect = 4.680e-33 Identity = 79/204 (38.73%), Postives = 118/204 (57.84%), Query Frame = 1
Query: 1 FPIKDLGEASYYLGYHITRDRNAGTLTFDQHQYIQTMAERFSVTKTSIIPS-VTGGKNLSKSDSPQTDAEVK*MHQIPYQ*IVGALMWAATMTRPDISFAAHQLAKFNDTPGPTHWRATQKALQYLWRTRDLGITYGGEPGGGCKLSAWFDADYGTFPGTRRSVSGGAVMMAGGAISLFSRVQKVTAAASSESEYAALAEMVNE 609
F +KD+GEA++ LG ITRDR+ L+ Q YI+ + ERF + + I + + G LS P+ D E M ++PY +G+LM+A TRPDI FA ++++ PGP HWRA ++ L+YL T D + Y GG +L+ + DAD+ + R+S SG A ++ GGA+S S+ Q A ++ ESEY A + V E
Sbjct: 653 FEMKDMGEANFVLGVKITRDRSKKLLSLSQGTYIKKILERFHMHNSKPIDTPMEKGCTLSLDQCPKNDEEKNQMSKVPYASAIGSLMYAMLCTRPDICFAVGMVSRYQSNPGPAHWRAVKRILRYLRGTSDHALCY---HGGDLRLTGYSDADWASDKDERKSTSGYAFILGGGAVSWCSKKQSCIALSTMESEYVACSAAVQE 853 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111149.912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig111149.912.1 >prot_H-elongata_contig111149.912.1 ID=prot_H-elongata_contig111149.912.1|Name=mRNA_H-elongata_contig111149.912.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp MWAATMTRPDISFAAHQLAKFNDTPGPTHWRATQKALQYLWRTRDLGITYback to top mRNA from alignment at H-elongata_contig111149:88..696- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig111149.912.1 ID=mRNA_H-elongata_contig111149.912.1|Name=mRNA_H-elongata_contig111149.912.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=609bp|location=Sequence derived from alignment at H-elongata_contig111149:88..696- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig111149:88..696- >mRNA_H-elongata_contig111149.912.1 ID=mRNA_H-elongata_contig111149.912.1|Name=mRNA_H-elongata_contig111149.912.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig111149:88..696- (Himanthalia elongata Himel1 dioecious)back to top |