mRNA_H-elongata_contig11114.910.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11114.910.1
Unique NamemRNA_H-elongata_contig11114.910.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11114.910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11114contigH-elongata_contig11114:546..1801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size343
Cds size216
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11114.910.1prot_H-elongata_contig11114.910.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11114 1047..1801 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929635.93328-UTR-H-elongata_contig11114:545..6341622929635.93328-UTR-H-elongata_contig11114:545..634Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11114 546..634 +
1691679100.3787978-UTR-H-elongata_contig11114:545..6341691679100.3787978-UTR-H-elongata_contig11114:545..634Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11114 546..634 +
1622929635.9545681-UTR-H-elongata_contig11114:1009..10461622929635.9545681-UTR-H-elongata_contig11114:1009..1046Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11114 1010..1046 +
1691679100.3875685-UTR-H-elongata_contig11114:1009..10461691679100.3875685-UTR-H-elongata_contig11114:1009..1046Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11114 1010..1046 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929635.9768262-CDS-H-elongata_contig11114:1046..11641622929635.9768262-CDS-H-elongata_contig11114:1046..1164Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11114 1047..1164 +
1691679100.4141345-CDS-H-elongata_contig11114:1046..11641691679100.4141345-CDS-H-elongata_contig11114:1046..1164Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11114 1047..1164 +
1622929635.9968097-CDS-H-elongata_contig11114:1703..18011622929635.9968097-CDS-H-elongata_contig11114:1703..1801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11114 1704..1801 +
1691679100.4237163-CDS-H-elongata_contig11114:1703..18011691679100.4237163-CDS-H-elongata_contig11114:1703..1801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11114 1704..1801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11114.910.1

>prot_H-elongata_contig11114.910.1 ID=prot_H-elongata_contig11114.910.1|Name=mRNA_H-elongata_contig11114.910.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
MKPTGYVGAGAHRNSSERLLTEGDEGFHPTSLTLPAFDQGVLTAPSMKMS
YLPDDDHELSGVSELLDCDEPK
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mRNA from alignment at H-elongata_contig11114:546..1801+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11114.910.1 ID=mRNA_H-elongata_contig11114.910.1|Name=mRNA_H-elongata_contig11114.910.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1256bp|location=Sequence derived from alignment at H-elongata_contig11114:546..1801+ (Himanthalia elongata Himel1 dioecious)
GTTTAATAGCTCCAAGCATCTGACTTTGTTTGGGTTACCGAAATTTCCTT
GGAGGCCGCTCCAGGTGCTGGATCAATTTCTTGGATCAGGCGAGATGACT
TACAAGCATGTTCGGAATATGCCACAGGCGTAGGTGTTTGTGCATTGTTT
CTTCTAACATACCCTAGCGGCTCATTCGCTCCGTTTCTAAGAGTTAACGG
TAACCAACCTTAAATATGACTAACCCCCAATACACTGGACAAAAAGCGAC
GACAGGAAATTTTGTTGAACGGCGCCAACTCCTGAGGAGGCAATAAAACC
CTGAGGACTAATGTTGTACGCCATAGCGTCGCAATGCTACCGTGCTAGTG
GCCAGCGAAAGTCGGTGTAACCTTCCCGAAACATAAACCTGCCTTTTCTT
TCTGCGCTTGGGAGACATTTTACGCTCCTTTTGCCCTTGTCTCGCCTTCT
CTTCTGCCACGTAGTTTTTGGAAACCAGATTTCGCCGTTCCTTCAACGAC
CATGAAGCCCACGGGCTACGTGGGAGCAGGGGCGCACAGGAATTCCTCCG
AGCGTCTCTTGACCGAAGGCGATGAAGGCTTCCACCCCACGTCGCTGACG
CTCCCCGCTTTTGACCAAGGTGGGATGCCGCAAACCGCTCTGGGGATGAG
TCGTTATGTTTGGGCGGGAGGGCCTCTGCCATTTATTCTTTATTCTTTAT
TCGTTTTACTTTACCCTGTATCTCCTCTGTACTACATATCTCCACGTATT
ATCCCCTCCTGCGCAAGATAATCGCTATTATGGGAGTCCTTTGTCCCCAA
ACCTCGGCCTTCCTCCAAAAATTGCGATGGAAAGCTGGGGGACAGTTGTA
GCACAACTTTAGTATAACAAGTGTCTGTTTTATCTTTTGTACCTCAACGA
TTGTACCTTTGTGGAAATTTGGAACTGACTGCTCTACGAGGGATAGGGTC
GGATCTATTTCGCGCTGGCGTGATGGGAGTACAGAGTACAATACTGTTCT
GTTCTCATACCCAGGAAGGATCTTTAGAATCTCTCGACAGCCAAAATCCC
GAATCCCGGATAGCAGTTACACCCCACACCCTCCCCTTCTCCCCTCCACG
TGCTGCACCCGGCGGTTCCTACGCATCCTCCACCTTTCGCTTCTCCTGCA
AGCCTCAGGGGTTCTCACGGCACCATCCATGAAGATGTCTTATTTACCAG
ACGACGACCATGAGCTGTCAGGTGTCAGCGAACTGCTCGATTGCGACGAG
CCAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig11114:546..1801+

>mRNA_H-elongata_contig11114.910.1 ID=mRNA_H-elongata_contig11114.910.1|Name=mRNA_H-elongata_contig11114.910.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig11114:546..1801+ (Himanthalia elongata Himel1 dioecious)
ATGAAGCCCACGGGCTACGTGGGAGCAGGGGCGCACAGGAATTCCTCCGA
GCGTCTCTTGACCGAAGGCGATGAAGGCTTCCACCCCACGTCGCTGACGC
TCCCCGCTTTTGACCAAGATGAAGCCCACGGGCTACGTGGGAGCAGGGGC
GCACAGGAATTCCTCCGAGCGTCTCTTGACCGAAGGCGATGAAGGCTTCC
ACCCCACGTCGCTGACGCTCCCCGCTTTTGACCAAGGGGTTCTCACGGCA
CCATCCATGAAGATGTCTTATTTACCAGACGACGACCATGAGCTGTCAGG
TGTCAGCGAACTGCTCGATTGCGACGAGCCAAAGGGGTTCTCACGGCACC
ATCCATGAAGATGTCTTATTTACCAGACGACGACCATGAGCTGTCAGGTG
TCAGCGAACTGCTCGATTGCGACGAGCCAAAG
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