mRNA_H-elongata_contig111049.908.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig111049.908.1
Unique NamemRNA_H-elongata_contig111049.908.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig111049.908.1 vs. uniprot
Match: D8LIL2_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIL2_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 2.280e-40
Identity = 72/100 (72.00%), Postives = 78/100 (78.00%), Query Frame = 1 
Query:    1 SLPYVNLRIMRRRWQIFSNLVRKNIEGFVHYVEGEPPMVKNMIGAYGNTDIALHGGAMLRECIRYENLAKMTLYDETLWLFFDQAWQIERDNVEYGSSAF 300
            SLP +     +   QIFSNLVRKNIE FV YVEGEP MVKNMIGAYGNTDIALHGGAMLRECIRY+NLA+MTLYDETLWLFFDQ   +   N +  S AF
Sbjct:   76 SLPALPFEARKDVSQIFSNLVRKNIETFVEYVEGEPLMVKNMIGAYGNTDIALHGGAMLRECIRYKNLARMTLYDETLWLFFDQ--YVHLPNFDVASDAF 173
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BLAST of mRNA_H-elongata_contig111049.908.1 vs. uniprot
Match: A0A6H5JQH7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH7_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 9.220e-40
Identity = 73/100 (73.00%), Postives = 78/100 (78.00%), Query Frame = 1 
Query:    1 SLPYVNLRIMRRRWQIFSNLVRKNIEGFVHYVEGEPPMVKNMIGAYGNTDIALHGGAMLRECIRYENLAKMTLYDETLWLFFDQAWQIERDNVEYGSSAF 300
            SLP +     +   QIFSNLVRKNIE FV YVEGEP MVKNMIGAYGNTDIALHGGAMLRECIRYENLA+MTLYDETLWLFFDQ   +   N +  S AF
Sbjct:   76 SLPALPFEARKDVSQIFSNLVRKNIETFVEYVEGEPLMVKNMIGAYGNTDIALHGGAMLRECIRYENLARMTLYDETLWLFFDQ--YVHLPNFDVASDAF 173
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BLAST of mRNA_H-elongata_contig111049.908.1 vs. uniprot
Match: A0A836CD73_9STRA (Mo25-like-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD73_9STRA)

HSP 1 Score: 100 bits (248), Expect = 8.260e-23
Identity = 51/100 (51.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query:    1 SLPYVNLRIMRRRWQIFSNLVRKNIEGFVHYVEGEPPMVKNMIGAYGNTDIALHGGAMLRECIRYENLAKMTLYDETLWLFFDQAWQIERDNVEYGSSAF 300
            ++P +     +   Q+F+NLVRKN EGF  YV   P MVK++I AYGN DIA+  G+MLRECIRYE+LA+ TL D+ LWLFFD    +   N +  S AF
Sbjct:   76 AMPVLPFEARKDVAQVFNNLVRKNHEGFADYVAENPTMVKDLILAYGNPDIAILCGSMLRECIRYESLARATLADDMLWLFFDS--YVHLPNFDVASDAF 173
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BLAST of mRNA_H-elongata_contig111049.908.1 vs. uniprot
Match: A0A8K1C7I4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C7I4_PYTOL)

HSP 1 Score: 85.5 bits (210), Expect = 1.230e-17
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:   43 QIFSNLVRKNIEGFVHYVEGEPPMVKNMIGAYGNTDIALHGGAMLRECIRYENLAKMTLYDETLWLFFDQAWQIERDNVEYGSSAF 300
            Q+++NLVR+N+ GFV YV  +P ++ +++  Y N +IAL+ G MLRE IR+E LA+  LY + LW FFD    +   N + GS AF
Sbjct:   97 QVYNNLVRRNLSGFVEYVRRQPDLLSSLVAGYENAEIALNCGTMLRESIRHEPLARQVLYSDDLWKFFDT--YVHYPNFDVGSDAF 180
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BLAST of mRNA_H-elongata_contig111049.908.1 vs. uniprot
Match: A0A812TBI9_SYMMI (Cab39l protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TBI9_SYMMI)

HSP 1 Score: 80.1 bits (196), Expect = 1.490e-16
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:   43 QIFSNLVRKNIEGFVHYVEGEPPMVKNMIGAYGNTDIALHGGAMLRECIRYENLAKMTLYDETLWLFFDQAWQIERDNVEYGSSAF 300
            QIF+NL+ K+++GFV Y+      V  +   Y N DIAL+ G+MLRECIRYE+LA+  L  E LWLFFD    +   N +  S AF
Sbjct:   21 QIFNNLMHKDVDGFVSYMGRNFRSVLKIAEGYANPDIALNSGSMLRECIRYEDLARQFLQSEQLWLFFDAF--VHLPNFDVASDAF 104
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BLAST of mRNA_H-elongata_contig111049.908.1 vs. uniprot
Match: A0A6G0X7F6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X7F6_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 6.090e-16
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:   43 QIFSNLVRKNIEGFVHYVEGEPPMVKNMIGAYGNTDIALHGGAMLRECIRYENLAKMTLYDETLWLFFDQAWQIERDNVEYGSSAF 300
            QI++N +R+++ GFV Y+E +P ++  ++  Y N+DIAL+ G MLRE IR+E+LA+  LY + LW FFD    +   N +  S AF
Sbjct:   98 QIYNNFMRRDLGGFVAYIERQPQIISALVRGYENSDIALNCGTMLRESIRHESLARQVLYSDDLWKFFDN--YVHLPNFDVSSDAF 181
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BLAST of mRNA_H-elongata_contig111049.908.1 vs. uniprot
Match: K3WY23_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WY23_GLOUD)

HSP 1 Score: 80.5 bits (197), Expect = 8.170e-16
Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = 1 
Query:   43 QIFSNLVRKNIEGFVHYVEGEPPMVKNMIGAYGNTDIALHGGAMLRECIRYENLAKMTLYDETLWLFFDQAWQIERDNVEYGSSAF 300
            Q+F+NL+R+++ GFV YVE +P ++  ++  Y N +IAL+ G MLRE IR+E +A   LY   LW FFD    +   N E GS AF
Sbjct:   97 QVFNNLMRRDLSGFVGYVEQQPEILSALVAGYENPEIALNCGTMLRESIRHELIAAKLLYSSDLWKFFDS--YVHLPNFEVGSDAF 180
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BLAST of mRNA_H-elongata_contig111049.908.1 vs. uniprot
Match: A0A024G227_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G227_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 8.180e-16
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 1 
Query:   43 QIFSNLVRKNIEGFVHYVEGEPPMVKNMIGAYGNTDIALHGGAMLRECIRYENLAKMTLYDETLWLFFDQAWQIERDNVEYGSSAF 300
            QI++NL+R+++ GFV YVE +P ++  ++  Y N DIAL+ G+M+RE +R+E LA+  LY E LW FFD  + +   N E  S AF
Sbjct:  603 QIYNNLIRRDLAGFVMYVERDPFIMHALVMGYENPDIALNCGSMMRESVRHETLARNILYSEDLWKFFD--YYVHYPNFEVASDAF 686
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BLAST of mRNA_H-elongata_contig111049.908.1 vs. uniprot
Match: H3G895_PHYRM (Uncharacterized protein n=45 Tax=Peronosporaceae TaxID=4777 RepID=H3G895_PHYRM)

HSP 1 Score: 80.1 bits (196), Expect = 1.180e-15
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 1 
Query:   43 QIFSNLVRKNIEGFVHYVEGEPPMVKNMIGAYGNTDIALHGGAMLRECIRYENLAKMTLYDETLWLFFDQAWQIERDNVEYGSSAF 300
            Q+++NL+R+++ GFV+YVE +P ++  ++  Y N D+AL+ G MLRE IR+E LA   LY   LW FFD    +   N E GS AF
Sbjct:   97 QVYNNLMRRDLAGFVNYVERKPEVLSALVAGYENPDVALNCGTMLRESIRHEILAGKILYSPDLWKFFDV--YVHLPNFEVGSDAF 180
[Close]
BLAST of mRNA_H-elongata_contig111049.908.1 vs. uniprot
Match: D0NII6_PHYIT (Calcium-binding protein, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NII6_PHYIT)

HSP 1 Score: 80.5 bits (197), Expect = 1.400e-15
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:   43 QIFSNLVRKNIEGFVHYVEGEPPMVKNMIGAYGNTDIALHGGAMLRECIRYENLAKMTLYDETLWLFFDQAWQIERDNVEYGSSAF 300
            Q+++NL+R+++ GFV YVE +P ++  ++  Y N+++AL+ G MLRE IR+E LA   LY   LW FFD+   +   N E GS AF
Sbjct:   97 QVYNNLMRRDLSGFVSYVERKPEILSALVAGYENSEVALNCGTMLRESIRHEILAGKILYSPDLWKFFDE--YVHLPNFEVGSDAF 180
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig111049.908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIL2_ECTSI2.280e-4072.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQH7_9PHAE9.220e-4073.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A836CD73_9STRA8.260e-2351.00Mo25-like-domain-containing protein n=1 Tax=Tribon... [more]
A0A8K1C7I4_PYTOL1.230e-1745.35Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A812TBI9_SYMMI1.490e-1647.67Cab39l protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A6G0X7F6_9STRA6.090e-1643.02Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
K3WY23_GLOUD8.170e-1645.35Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A024G227_9STRA8.180e-1645.35Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
H3G895_PHYRM1.180e-1545.35Uncharacterized protein n=45 Tax=Peronosporaceae T... [more]
D0NII6_PHYIT1.400e-1544.19Calcium-binding protein, putative n=1 Tax=Phytopht... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig111049contigH-elongata_contig111049:1710..2009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.4
Seed ortholog evalue8.2e-31
Seed eggNOG ortholog2880.D8LIL2
Preferred nameCAB39L
KEGG koko:K08272
KEGG Pathwayko04150,ko04152,map04150,map04152
GOsGO:0000003,GO:0000131,GO:0000920,GO:0001700,GO:0001775,GO:0001932,GO:0001934,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004672,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005815,GO:0005816,GO:0005829,GO:0005856,GO:0005886,GO:0005933,GO:0005937,GO:0006355,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0006970,GO:0006971,GO:0007049,GO:0007050,GO:0007114,GO:0007117,GO:0007118,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007405,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0008356,GO:0008360,GO:0009628,GO:0009790,GO:0009792,GO:0009889,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010562,GO:0010604,GO:0010799,GO:0010800,GO:0010959,GO:0012505,GO:0015630,GO:0016020,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017145,GO:0018105,GO:0018193,GO:0018209,GO:0019207,GO:0019209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019887,GO:0019899,GO:0019900,GO:0019954,GO:0022008,GO:0022402,GO:0022414,GO:0022603,GO:0022604,GO:0022898,GO:0023014,GO:0023052,GO:0030141,GO:0030154,GO:0030234,GO:0030295,GO:0030427,GO:0030436,GO:0030447,GO:0030448,GO:0031323,GO:0031325,GO:0031326,GO:0031399,GO:0031401,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032147,GO:0032153,GO:0032268,GO:0032270,GO:0032409,GO:0032410,GO:0032412,GO:0032413,GO:0032501,GO:0032502,GO:0032505,GO:0032878,GO:0032879,GO:0032940,GO:0032991,GO:0033036,GO:0033554,GO:0033674,GO:0034613,GO:0034762,GO:0034763,GO:0034765,GO:0034766,GO:0034774,GO:0035556,GO:0035839,GO:0036211,GO:0036230,GO:0036445,GO:0040007,GO:0042119,GO:0042325,GO:0042327,GO:0042995,GO:0043085,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043266,GO:0043267,GO:0043269,GO:0043271,GO:0043299,GO:0043312,GO:0043332,GO:0043412,GO:0043539,GO:0043549,GO:0043934,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044433,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044732,GO:0045055,GO:0045165,GO:0045321,GO:0045786,GO:0045859,GO:0045860,GO:0045937,GO:0046872,GO:0046903,GO:0048103,GO:0048315,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051128,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051286,GO:0051301,GO:0051338,GO:0051347,GO:0051641,GO:0051716,GO:0051726,GO:0055057,GO:0055059,GO:0060205,GO:0060255,GO:0060341,GO:0060583,GO:0061351,GO:0061695,GO:0061794,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0071214,GO:0071470,GO:0071476,GO:0071574,GO:0071704,GO:0071900,GO:0071902,GO:0071944,GO:0071958,GO:0072089,GO:0072697,GO:0072741,GO:0080090,GO:0097708,GO:0098722,GO:0098772,GO:0099503,GO:0101002,GO:0104004,GO:0120025,GO:0120038,GO:0140096,GO:1901016,GO:1901017,GO:1901379,GO:1901380,GO:1901564,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1904062,GO:1904063,GO:1904813,GO:1990234,GO:1990778,GO:2000099,GO:2000100,GO:2000112,GO:2000769,GO:2001141
EggNOG free text desc.positive regulation of peptidyl-threonine phosphorylation
EggNOG OGsKOG1566@1,KOG1566@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionConidiophore development protein HymA
Ec32 orthologEc-18_003180.1
Exons1
Model size300
Cds size273
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929635.7881792-CDS-H-elongata_contig111049:1709..19821622929635.7881792-CDS-H-elongata_contig111049:1709..1982Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111049 1710..1982 -
1691679100.3436172-CDS-H-elongata_contig111049:1709..19821691679100.3436172-CDS-H-elongata_contig111049:1709..1982Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig111049 1710..1982 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929635.811061-UTR-H-elongata_contig111049:1982..20091622929635.811061-UTR-H-elongata_contig111049:1982..2009Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig111049 1983..2009 -
1691679100.354217-UTR-H-elongata_contig111049:1982..20091691679100.354217-UTR-H-elongata_contig111049:1982..2009Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig111049 1983..2009 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig111049.908.1prot_H-elongata_contig111049.908.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig111049 1710..1982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig111049.908.1

>prot_H-elongata_contig111049.908.1 ID=prot_H-elongata_contig111049.908.1|Name=mRNA_H-elongata_contig111049.908.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MRRRWQIFSNLVRKNIEGFVHYVEGEPPMVKNMIGAYGNTDIALHGGAML
RECIRYENLAKMTLYDETLWLFFDQAWQIERDNVEYGSSAF
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mRNA from alignment at H-elongata_contig111049:1710..2009-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig111049.908.1 ID=mRNA_H-elongata_contig111049.908.1|Name=mRNA_H-elongata_contig111049.908.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at H-elongata_contig111049:1710..2009- (Himanthalia elongata Himel1 dioecious)
TCGCTACCCTACGTGAATCTGCGAATAATGCGTCGACGATGGCAGATTTT
CAGCAATCTTGTACGCAAGAACATCGAGGGGTTCGTGCATTACGTGGAAG
GTGAGCCGCCGATGGTGAAGAATATGATCGGCGCCTACGGCAACACGGAC
ATCGCTCTTCACGGCGGCGCGATGCTTAGGGAGTGCATCCGCTACGAGAA
CCTGGCGAAGATGACTCTGTACGACGAGACGCTCTGGCTCTTTTTCGATC
AGGCATGGCAAATAGAACGAGATAACGTTGAATACGGTAGTAGTGCTTTC
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Coding sequence (CDS) from alignment at H-elongata_contig111049:1710..2009-

>mRNA_H-elongata_contig111049.908.1 ID=mRNA_H-elongata_contig111049.908.1|Name=mRNA_H-elongata_contig111049.908.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig111049:1710..2009- (Himanthalia elongata Himel1 dioecious)
ATGCGTCGACGATGGCAGATTTTCAGCAATCTTGTACGCAAGAACATCGA
GGGGTTCGTGCATTACGTGGAAGGTGAGCCGCCGATGGTGAAGAATATGA
TCGGCGCCTACGGCAACACGGACATCGCTCTTCACGGCGGCGCGATGCTT
AGGGAGTGCATCCGCTACGAGAACCTGGCGAAGATGACTCTGTACGACGA
GACGCTCTGGCTCTTTTTCGATCAGGCATGGCAAATAGAACGAGATAACG
TTGAATACGGTAGTAGTGCTTTCATGCGTCGACGATGGCAGATTTTCAGC
AATCTTGTACGCAAGAACATCGAGGGGTTCGTGCATTACGTGGAAGGTGA
GCCGCCGATGGTGAAGAATATGATCGGCGCCTACGGCAACACGGACATCG
CTCTTCACGGCGGCGCGATGCTTAGGGAGTGCATCCGCTACGAGAACCTG
GCGAAGATGACTCTGTACGACGAGACGCTCTGGCTCTTTTTCGATCAGGC
ATGGCAAATAGAACGAGATAACGTTGAATACGGTAGTAGTGCTTTC
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